Pan-serotypic detection of foot-and-mouth disease virus by RT linear-after-the-exponential PCR

Molecular and Cellular Probes

Volumn 24, Issue 5, 2010, Pages 250-255

  Reid, Scott M ^a   Pierce, Kenneth E ^b   Mistry, Rohit ^c   Bharya, Sukvinder ^c   Dukes, Juliet P ^a   Volpe, Carmelo ^c   Wangh, Lawrence J ^b   King, Donald P ^a  

^a INSTITUTE FOR ANIMAL HEALTH   (United Kingdom)

^b BRANDEIS UNIVERSITY   (United States)

^c Smiths Detection   (United Kingdom)

Author keywords

Armored RNA; Asymmetric PCR; Foot and mouth disease; Real time RT PCR; RT LATE PCR

Indexed keywords

RNA POLYMERASE;

AMPLICON; ARTICLE; FOOT AND MOUTH DISEASE VIRUS; HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION LINEAR AFTER THE EXPONENTIAL POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEROTYPING;

ANIMALS; DNA, COMPLEMENTARY; DNA-DIRECTED RNA POLYMERASES; FOOT-AND-MOUTH DISEASE; FOOT-AND-MOUTH DISEASE VIRUS; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SEROTYPING; SPECIES SPECIFICITY; VIRAL PROTEINS;

FOOT-AND-MOUTH DISEASE VIRUS;

EID: 77956063833     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2010.04.004     Document Type: Article

References (23)

1. Belák S., Thorén P., LeBlanc N., Viljoen G. Advances in viral disease diagnostic and molecular epidemiological technologies. Expert Rev Mol Diag 2009, 9:367-381.
2. Belsham G.J. Distinctive features of foot-and-mouth disease virus, a member of the picornavirus family; aspects of virus protein synthesis, protein processing and structure. Prog Biophys Mol Biol 1993, 60:241-260.
3. Callahan J.D., Brown F., Osorio F.A., Sur J.H., Kramer E., Long G.W., et al. Use of a portable real-time reverse transcriptase-polymerase chain reaction assay for rapid detection of foot-and-mouth disease virus. J Am Vet Med Assoc 2002, 220:1636-1642.
4. Ferris N.P., Dawson M. Routine application of enzyme-linked immunosorbent assay in comparison with complement fixation for the diagnosis of foot-and-mouth and swine vesicular diseases. Vet Microbiol 1988, 16:201-209.
5. Ferris N.P., King D.P., Reid S.M., Shaw A.E., Hutchings G.H. Comparisons of original laboratory results and retrospective analysis by real-time reverse transcriptase-PCR of virological samples collected from confirmed cases of foot-and-mouth disease in the UK in 2001. Vet Rec 2006, 159:373-378.
6. King D.P., Ferris N.P., Shaw A.E., Reid S.M., Hutchings G.H., Giuffre A.C., et al. Detection of foot-and-mouth disease virus: comparative diagnostic sensitivity of two independent real-time reverse transcription-polymerase chain reaction assays. J Vet Diagn Invest 2006, 18:93-97.
7. King D.P., Dukes J.P., Reid S.M., Ebert K., Shaw A.E., Mills C.E., et al. Prospects for rapid diagnosis of foot-and-mouth disease in the field using reverse transcriptase-PCR. Vet Rec 2008, 162:315-316.
8. Knowles N.J., Nazem Shirazi M.H., Wadsworth J., Swabey K.G., Stirling J.M., Statham R.J., et al. Recent spread of a new strain (A-Iran-05) of foot-and-mouth disease virus type A in the Middle East. Transbound Emerg Dis 2009, 56:157-169.
9. Moniwa M., Clavijo A., Li M., Colignon B., Kitching R.P. Performance of a foot-and-mouth disease virus reverse transcription-polymerase reaction with amplification controls between three real-time instruments. J Vet Diagn Invest 2007, 19:9-20.
10. Moonen P., Boonstra J., van der Honing R.H., Leendertse C.B., Jacobs L., Dekker A. Validation of a LightCycler-based reverse transcription polymerase chain reaction for the detection of foot-and-mouth disease virus. J Virol Methods 2003, 113:35-41.
11. Pierce K, Mistry R, Reid SM, Bharya S, Dukes JP, Hartshorn C, et al. Design and optimization of a novel reverse transcription linear-after-the-exponential PCR for the detection of foot-and-mouth disease virus. J Applied Microbiol, in press.
12. Pierce K.E., Sanchez J.A., Rice J.E., Wangh L.J. Linear-After-The-Exponential (LATE)-PCR: optimizing primer design for high yields of specific single-stranded DNA and improved real-time detection. Proc Natl Acad Sci (USA) 2005, 102:8609-8614.
13. Pierce K.E., Wangh L.J. LATE-PCR and allied technologies: real-time detection strategies for rapid, reliable diagnosis from single cells. Single cell diagnostics, methods in molecular science series 2007, 65-85. Humana Press, UK. A.R. Thornhill (Ed.).
14. Proutski V., Holmes E.C. SWAN: sliding window analysis of nucleotide sequence variability. Bioinformatics 1998, 14:467-468.
15. Rasmussen T.B., Uttenthal A., de Stricker K., Belák S., Storgaard T. Development of a novel quantitative real-time RT-PCR assay for the simultaneous detection of all serotypes of foot-and-mouth disease virus. Arch Virol 2003, 148:2005-2021.
16. Reid S.M., Ferris N.P., Hutchings G.H., Zhang Z., Belsham G.J., Alexandersen S. Detection of all seven serotypes of foot-and-mouth disease virus by real-time, fluorogenic reverse transcription polymerase chain reaction assay. J Virol Methods 2002, 105:67-80.
17. Reid S.M., Grierson S.S., Ferris N.P., Hutchings G.H., Alexandersen S. Evaluation of automated RT-PCR to accelerate the laboratory diagnosis of foot-and-mouth disease virus. J Virol Methods 2003, 107:129-139.
18. Reid S.M., Ebert K., Bachanek-Bankowska K., Batten C., Sanders A., Wright C., et al. Performance of diagnostic real-time RT-PCR during the outbreaks of foot-and-mouth disease in the United Kingdom in 2007. J Vet Diagn Invest 2009, 21:321-330.
19. Rice J.E., Sanchez J.A., Pierce K.E., Reis A.H., Osborne A., Wangh L.J. Monoplex/multiplex linear-after-the-exponential-PCR assays combined with PrimeSafe and Dilute-'N'-Go sequencing. Nat Protoc 2007, 2:2429-2438.
20. Sanchez J.A., Pierce K.E., Rice J.E., Wangh L.J. Linear-after-the-exponential (LATE)-PCR: an advanced method of asymmetric PCR and its uses in quantitative real-time analysis. Proc Natl Acad Sci 2004, 101:1933-1938.
21. Shaw A.E., Reid S.M., King D.P., Hutchings G.H., Ferris N.P. Enhanced laboratory diagnosis of foot and mouth disease by real-time polymerase chain reaction. Rev Sci Tech 2004, 23:1003-1009.
22. Shaw A.E., Reid S.M., Ebert K., Hutchings G.H., Ferris N.P., King D.P. Implementation of a one-step real-time RT-PCR protocol for diagnosis of foot-and- mouth disease. J Virol Methods 2007, 143:81-85.
23. WalkerPeach C.R., Winkler M., DuBois D.B., Pasloske B.L. Ribonuclease-resistant RNA controls (Armored RNA) for reverse transcription-PCR, branched DNA, and genotyping assays for hepatitis C virus. Clin Chem 1999, 45:2057-2059.