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Volumn 282, Issue 1804, 2015, Pages

Genome reorganization in F1 hybrids uncovers the role of retrotransposons in reproductive isolation

Author keywords

Aegilops; Genome shock; Hybridization; Nucleocytoplasmic incompatibilities; Speciation; TEs

Indexed keywords

GENETIC VARIATION; GENOME; GRASS; HYBRIDIZATION; INTERSPECIFIC VARIATION; POLYMORPHISM; REPRODUCTIVE ISOLATION; SPECIATION (BIOLOGY); SURVIVORSHIP;

EID: 84923384854     PISSN: 09628452     EISSN: 14712954     Source Type: Journal    
DOI: 10.1098/rspb.2014.2874     Document Type: Article
Times cited : (37)

References (54)
  • 1
    • 69749117757 scopus 로고    scopus 로고
    • Contrasting evolutionary dynamics between angiosperm and mammalian genomes
    • Kejnovsky E, Leitch IJ, Leitch AR. 2009 Contrasting evolutionary dynamics between angiosperm and mammalian genomes. Trends Ecol. Evol. 24, 572–582. (doi:10.1016/j.tree.2009. 04.010).
    • (2009) Trends Ecol. Evol , vol.24 , pp. 572-582
    • Kejnovsky, E.1    Leitch, I.J.2    Leitch, A.R.3
  • 3
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: Drivers of genome evolution
    • Kazazian HH. 2004 Mobile elements: drivers of genome evolution. Science 303, 1626–1632. (doi:10.1126/science.1089670).
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 5
    • 84875847924 scopus 로고    scopus 로고
    • Is junk DNA bunk? A critique of ENCODE
    • Doolittle WF. 2013 Is junk DNA bunk? A critique of ENCODE. Proc. Natl Acad. Sci. USA 110, 5294–5300. (doi:10.1073/pnas.1221376110).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 5294-5300
    • Doolittle, W.F.1
  • 6
    • 8644269647 scopus 로고    scopus 로고
    • Evolution of genome size: Multilevel selection, mutation bias or dynamical chaos
    • Vinogradov AE. 2004 Evolution of genome size: multilevel selection, mutation bias or dynamical chaos? Curr. Opin. Genet. Dev. 14, 620–626. (doi:10.1016/j.gde.2004.09.007).
    • (2004) Curr. Opin. Genet. Dev , vol.14 , pp. 620-626
    • Vinogradov, A.E.1
  • 7
    • 84881611362 scopus 로고    scopus 로고
    • Transposable elements and microevolutionary changes in natural populations
    • Bonchev G, Parisod C. 2013 Transposable elements and microevolutionary changes in natural populations. Mol. Ecol. Resour. 13, 765–775. (doi:10.1111/1755-0998.12133).
    • (2013) Mol. Ecol. Resour , vol.13 , pp. 765-775
    • Bonchev, G.1    Parisod, C.2
  • 8
    • 84871329875 scopus 로고    scopus 로고
    • How important are transposons for plant evolution
    • Lisch DR. 2013 How important are transposons for plant evolution. Nat. Rev. Genet. 14, 49–61. (doi:10.1038/nrg3374).
    • (2013) Nat. Rev. Genet , vol.14 , pp. 49-61
    • Lisch, D.R.1
  • 9
    • 84872519378 scopus 로고    scopus 로고
    • Hybridization and speciation
    • Abbott R et al. 2013 Hybridization and speciation. J. Evol. Biol. 26, 229–246. (doi:10.1111/j.1420-9101.2012.02599.x).
    • (2013) J. Evol. Biol , vol.26 , pp. 229-246
    • Abbott, R.1
  • 11
    • 70349288278 scopus 로고    scopus 로고
    • Genome evolution in allopolyploid wheat: A revolutionary reprogramming followed by gradual changes
    • Feldman M, Levy AA. 2009 Genome evolution in allopolyploid wheat: a revolutionary reprogramming followed by gradual changes. J. Genet. Genomics 36, 511–518. (doi:10.1016/S1673-8527(08)60142-3).
    • (2009) J. Genet. Genomics , vol.36 , pp. 511-518
    • Feldman, M.1    Levy, A.A.2
  • 12
    • 84859890589 scopus 로고    scopus 로고
    • Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants
    • Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC. 2012 Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Curr. Opin. Plant Biol. 15, 131–139.(doi:10.1016/j.pbi.2012.01.015).
    • (2012) Curr. Opin. Plant Biol , vol.15 , pp. 131-139
    • Freeling, M.1    Woodhouse, M.R.2    Subramaniam, S.3    Turco, G.4    Lisch, D.5    Schnable, J.C.6
  • 13
    • 84872575342 scopus 로고    scopus 로고
    • Hybridization, speciation and novelty
    • Soltis PS. 2013 Hybridization, speciation and novelty. J. Evol. Biol. 26, 291–293. (doi:10.1111/jeb.12095).
    • (2013) J. Evol. Biol , vol.26 , pp. 291-293
    • Soltis, P.S.1
  • 14
    • 0035856482 scopus 로고    scopus 로고
    • Polyploid evolution: Keeping the peace at genomic reunions
    • Rieseberg LH. 2001 Polyploid evolution: keeping the peace at genomic reunions. Curr. Biol. 11, R925–R928. (doi:10.1016/S0960-9822(01)00556-5).
    • (2001) Curr. Biol , vol.11 , pp. R925-R928
    • Rieseberg, L.H.1
  • 15
    • 84881127570 scopus 로고    scopus 로고
    • Natural pathways to polyploidy in plants and consequences for genome reorganization
    • Tayale A, Parisod C. 2013 Natural pathways to polyploidy in plants and consequences for genome reorganization. Cytogenet. Genome Res.140, 79–96. (doi:10.1159/000351318).
    • (2013) Cytogenet. Genome Res , vol.140 , pp. 79-96
    • Tayale, A.1    Parisod, C.2
  • 17
    • 84899743736 scopus 로고    scopus 로고
    • The contributions of transposable elements to the structure, function, and evolution of plant genomes
    • Bennetzen JL, Wang H. 2014 The contributions of transposable elements to the structure, function, and evolution of plant genomes. Annu. Rev. Plant Biol. 65, 505–530. (doi:10.1146/annurev-arplant-050213-035811).
    • (2014) Annu. Rev. Plant Biol , vol.65 , pp. 505-530
    • Bennetzen, J.L.1    Wang, H.2
  • 18
    • 78049354472 scopus 로고    scopus 로고
    • A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
    • Bourc’his D, Voinnet O. 2010 A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 330, 617–622. (doi:10.1126/science.1194776).
    • (2010) Science , vol.330 , pp. 617-622
    • Bourc’his, D.1    Voinnet, O.2
  • 19
    • 84902968540 scopus 로고    scopus 로고
    • Genomics of homoploid hybrid speciation: Diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers
    • Renaut S, Rowe HC, Ungerer MC, Rieseberg LH. 2014 Genomics of homoploid hybrid speciation: diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers. Phil. Trans. R. Soc. B 369, 20130345. (doi:10.1098/rstb.2013.0345).
    • (2014) Phil. Trans. R. Soc. B , vol.369
    • Renaut, S.1    Rowe, H.C.2    Ungerer, M.C.3    Rieseberg, L.H.4
  • 20
    • 70349278339 scopus 로고    scopus 로고
    • Selective epigenetic control of retrotransposition in Arabidopsis
    • Mirouze M et al. 2009 Selective epigenetic control of retrotransposition in Arabidopsis. Nature 461, 427–430. (doi:10.1038/nature08328).
    • (2009) Nature , vol.461 , pp. 427-430
    • Mirouze, M.1
  • 21
    • 33745668459 scopus 로고    scopus 로고
    • Parentdependent loss of gene silencing during interspecieshybridization
    • Josefsson C, Dilkes B, Comai L. 2006 Parentdependent loss of gene silencing during interspecieshybridization. Curr. Biol. 16, 1322–1328. (doi:10.1016/j.cub.2006.05.045).
    • (2006) Curr. Biol , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3
  • 22
    • 77950948347 scopus 로고    scopus 로고
    • Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis
    • Martienssen RA. 2010 Heterochromatin, small RNA and post-fertilization dysgenesis in allopolyploid and interploid hybrids of Arabidopsis. New Phytol. 186, 46–53. (doi:10.1111/j.1469-8137.2010.03193.x).
    • (2010) New Phytol , vol.186 , pp. 46-53
    • Martienssen, R.A.1
  • 23
    • 84863265162 scopus 로고    scopus 로고
    • Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae)
    • Baum BR, Edwards T, Mamuti M, Johnson DA. 2012 Phylogenetic relationships among the polyploid and diploid Aegilops species inferred from the nuclear 5S rDNA sequences (Poaceae: Triticeae). Genome 55,177–193. (doi:10.1139/g2012-006).
    • (2012) Genome , vol.55 , pp. 177-193
    • Baum, B.R.1    Edwards, T.2    Mamuti, M.3    Johnson, D.A.4
  • 25
    • 69249209825 scopus 로고    scopus 로고
    • Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae)
    • Meimberg H, Rice K, Milan N, Njoku C, McKay J. 2009 Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae).Am. J. Bot. 96, 1262–1273. (doi:10.3732/ajb.0800345).
    • (2009) Am. J. Bot , vol.96 , pp. 1262-1273
    • Meimberg, H.1    Rice, K.2    Milan, N.3    Njoku, C.4    McKay, J.5
  • 26
    • 77955908237 scopus 로고    scopus 로고
    • Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
    • Choulet F et al. 2011 Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell 22, 1686–1701. (doi:10.1105/tpc.110.074187).
    • (2011) Plant Cell , vol.22 , pp. 1686-1701
    • Choulet, F.1
  • 27
    • 80052273129 scopus 로고    scopus 로고
    • Genomics of transposable elements in the Triticeae
    • (eds GJ Muehlbauer, C Feuille, New York, NY: Springer
    • Sabot F, Schulman AH. 2009 Genomics of transposable elements in the Triticeae. In Genetics and genomics of the Triticeae (eds GJ Muehlbauer, C Feuille), pp. 387–405. New York, NY: Springer.
    • (2009) Genetics and Genomics of the Triticeae , pp. 387-405
    • Sabot, F.1    Schulman, A.H.2
  • 28
    • 84881609643 scopus 로고    scopus 로고
    • Evolutionary dynamics of LTR retrotransposons in wild wheats assessed with high throughput sequencing
    • Senerchia N, Wicker T, Felber F, Parisod C. 2013 Evolutionary dynamics of LTR retrotransposons in wild wheats assessed with high throughput sequencing. Genome Biol. Evol. 5, 1010–1020.(doi:10.1093/gbe/evt064).
    • (2013) Genome Biol. Evol , vol.5 , pp. 1010-1020
    • Senerchia, N.1    Wicker, T.2    Felber, F.3    Parisod, C.4
  • 30
    • 3042523445 scopus 로고    scopus 로고
    • Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster
    • Badaeva ED et al. 2004 Genome differentiation in Aegilops. 4. Evolution of the U-genome cluster. Plant Syst. Evol. 246, 45–76. (doi:10.1007/s00606-003-0072-4).
    • (2004) Plant Syst. Evol , vol.246 , pp. 45-76
    • Badaeva, E.D.1
  • 31
    • 84898024392 scopus 로고    scopus 로고
    • Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats
    • Senerchia N, Felber F, Parisod C. 2014 Contrasting evolutionary trajectories of multiple retrotransposons following independent allopolyploidy in wild wheats. New Phytol. 202, 975–985. (doi:10.1111/nph.12731).
    • (2014) New Phytol , vol.202 , pp. 975-985
    • Senerchia, N.1    Felber, F.2    Parisod, C.3
  • 32
    • 0028680729 scopus 로고
    • Wild wheats: A monograph of Aegilops L. And Amblyopyrum (Jaub. and Spach) Eig (Poaceae)
    • van Slageren MW. 1994 Wild wheats: a monograph of Aegilops L. and Amblyopyrum (Jaub. and Spach) Eig (Poaceae). Wageningen Agricultural University Papers 94–97, 1–512.
    • (1994) Wageningen Agricultural University Papers , vol.9497 , pp. 1-512
    • Van Slageren, M.W.1
  • 33
    • 84871084660 scopus 로고    scopus 로고
    • Genome-specific introgression between wheat and its wild relative Aegilops triuncialis
    • Parisod C, Definod C, Sarr A, Arrigo N, Felber F. 2013 Genome-specific introgression between wheat and its wild relative Aegilops triuncialis. J. Evol. Biol. 26, 223–228. (doi:10.1111/jeb.12040).
    • (2013) J. Evol. Biol , vol.26 , pp. 223-228
    • Parisod, C.1    Definod, C.2    Sarr, A.3    Arrigo, N.4    Felber, F.5
  • 34
    • 70449341719 scopus 로고    scopus 로고
    • Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina
    • Parisod C, Salmon A, Zerjal T, Tenaillon M, Grandbastien MA, Ainouche M. 2009 Rapid structural and epigenetic reorganization near transposable elements in hybrid and allopolyploid genomes in Spartina. New Phytol. 184, 1003–1015. (doi:10.1111/j.1469-8137.2009.03029.x).
    • (2009) New Phytol , vol.184 , pp. 1003-1015
    • Parisod, C.1    Salmon, A.2    Zerjal, T.3    Tenaillon, M.4    Grandbastien, M.A.5    Ainouche, M.6
  • 35
    • 0036456019 scopus 로고    scopus 로고
    • Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers
    • Cervera MT, Ruiz-Garcia L, Martinez-Zapater JM. 2002 Analysis of DNA methylation in Arabidopsis thaliana based on methylation-sensitive AFLP markers. Mol. Genet. Genomics 268, 543–552.(doi:10.1007/s00438-002-0772-4).
    • (2002) Mol. Genet. Genomics , vol.268 , pp. 543-552
    • Cervera, M.T.1    Ruiz-Garcia, L.2    Martinez-Zapater, J.M.3
  • 36
  • 37
    • 49849092907 scopus 로고    scopus 로고
    • Simultaneous inference in general parametric models
    • Hothorn T, Bretz F, Westfall P. 2008 Simultaneous inference in general parametric models. Biom. J. 50, 346–363. (doi:10.1002/bimj.200810425).
    • (2008) Biom. J , vol.50 , pp. 346-363
    • Hothorn, T.1    Bretz, F.2    Westfall, P.3
  • 38
    • 84873554456 scopus 로고    scopus 로고
    • A general and simple method for obtaining R2 from generalized linear mixed-effects models
    • Nakagawa S, Schielzeth H. 2013 A general and simple method for obtaining R2 from generalized linear mixed-effects models. Methods Ecol. Evol. 4, 133–142. (doi:10.1111/j.2041-210x.2012.00261.x).
    • (2013) Methods Ecol. Evol , vol.4 , pp. 133-142
    • Nakagawa, S.1    Schielzeth, H.2
  • 39
    • 84869028379 scopus 로고    scopus 로고
    • Genome evolution due to allopolyploidization in wheat
    • Feldman M, Levy AA. 2012 Genome evolution due to allopolyploidization in wheat. Genetics 192, 763–774. (doi:10.1534/genetics.112.146316).
    • (2012) Genetics , vol.192 , pp. 763-774
    • Feldman, M.1    Levy, A.A.2
  • 40
    • 84865772155 scopus 로고    scopus 로고
    • Genomic asymmetry in allopolyploid plants: Wheat as a model
    • Feldman M, Levy AA, Fahima T, Korol A. 2012 Genomic asymmetry in allopolyploid plants: wheat as a model. J. Exp. Bot. 63, 5045–5059. (doi:10.1093/jxb/ers192).
    • (2012) J. Exp. Bot , vol.63 , pp. 5045-5059
    • Feldman, M.1    Levy, A.A.2    Fahima, T.3    Korol, A.4
  • 41
    • 34548139429 scopus 로고    scopus 로고
    • Plant speciation
    • Rieseberg LH, Willis JH. 2007 Plant speciation. Science 317, 910–914. (doi:10.1126/science.1137729).
    • (2007) Science , vol.317 , pp. 910-914
    • Rieseberg, L.H.1    Willis, J.H.2
  • 42
    • 0035932764 scopus 로고    scopus 로고
    • Asymmetrical crossing barriers in angiosperms
    • Tiffin P, Olson MS, Moyle LC. 2001 Asymmetrical crossing barriers in angiosperms. Proc. R. Soc. Lond. B 268, 861–867. (doi:10.1098/rspb.2000.1578).
    • (2001) Proc. R. Soc. Lond. B , vol.268 , pp. 861-867
    • Tiffin, P.1    Olson, M.S.2    Moyle, L.C.3
  • 43
    • 84875438593 scopus 로고    scopus 로고
    • Responses of transposable elements to polyploidy
    • (eds M-A Grandbastien, JM Casacuberta, Berlin, Germany:Springer
    • Parisod C, Senerchia N. 2012 Responses of transposable elements to polyploidy. In Plant transposable elements (eds M-A Grandbastien, JM Casacuberta), pp. 147–148. Berlin, Germany:Springer.
    • (2012) Plant Transposable Elements , pp. 147-148
    • Parisod, C.1    Senerchia, N.2
  • 44
    • 77950939119 scopus 로고    scopus 로고
    • Mobilization of retrotransposons in synthetic allotetraploid tobacco
    • Petit M et al. 2010 Mobilization of retrotransposons in synthetic allotetraploid tobacco. New Phytol. 186, 135–147. (doi:10.1111/j.1469-8137.2009.03140.x).
    • (2010) New Phytol , vol.186 , pp. 135-147
    • Petit, M.1
  • 45
    • 84879739501 scopus 로고    scopus 로고
    • Investigating incipient speciation in Arabidopsis lyrata from patterns of transmission ratio distortion
    • Leppälä J, Bokma F, Savolainen O. 2013 Investigating incipient speciation in Arabidopsis lyrata from patterns of transmission ratio distortion. Genetics 194, 697–708. (doi:10.1534/genetics.113.152561).
    • (2013) Genetics , vol.194 , pp. 697-708
    • Leppälä, J.1    Bokma, F.2    Savolainen, O.3
  • 46
    • 49649099240 scopus 로고    scopus 로고
    • The strength and genetic basis of reproductive isolating barriers in flowering plants
    • Lowry DB, Modliszewski JL, Wright KM, Wu CA, Willis JH. 2008 The strength and genetic basis of reproductive isolating barriers in flowering plants. Phil. Trans. R. Soc. B 363, 3009–3021. (doi:10.1098/rstb.2008.0064).
    • (2008) Phil. Trans. R. Soc. B , vol.363 , pp. 3009-3021
    • Lowry, D.B.1    Modliszewski, J.L.2    Wright, K.M.3    Wu, C.A.4    Willis, J.H.5
  • 47
    • 0002118987 scopus 로고
    • Hybrid wheat
    • (ed. R Frankel, Berlin, Germany: Springer
    • Wilson P, Driscoll CJ. 1983 Hybrid wheat. In Heterosis (ed. R Frankel), pp. 94–123. Berlin, Germany: Springer.
    • (1983) Heterosis , pp. 94-123
    • Wilson, P.1    Driscoll, C.J.2
  • 48
    • 0034866855 scopus 로고    scopus 로고
    • Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
    • Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA. 2001 Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 13, 1749–1759.(doi:10.1105/tpc.13.8.1749).
    • (2001) Plant Cell , vol.13 , pp. 1749-1759
    • Shaked, H.1    Kashkush, K.2    Ozkan, H.3    Feldman, M.4    Levy, A.A.5
  • 49
    • 78651388093 scopus 로고    scopus 로고
    • Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid
    • Yaakov B, Kaskush K. 2011 Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid. Genome 54, 42–49. (doi:10.1139/G10-091).
    • (2011) Genome , vol.54 , pp. 42-49
    • Yaakov, B.1    Kaskush, K.2
  • 50
    • 84884204399 scopus 로고    scopus 로고
    • Copy number variation of transposable elements in Triticum-Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization
    • Yaakov B, Meyer K, Ben-David S, Kaskush K. 2013 Copy number variation of transposable elements in Triticum-Aegilops genus suggests evolutionary and revolutionary dynamics following allopolyploidization. Plant Cell Rep. 32, 1615–1624. (doi:10.1007/s00299-013-1472-8).
    • (2013) Plant Cell Rep , vol.32 , pp. 1615-1624
    • Yaakov, B.1    Meyer, K.2    Ben-David, S.3    Kaskush, K.4
  • 51
    • 79952907997 scopus 로고    scopus 로고
    • Size matters in Triticeae polyploids: Larger genomes have higher remodeling
    • Bento M, Gustafson JP, Viegas W, Silva M. 2011 Size matters in Triticeae polyploids: larger genomes have higher remodeling. Genome 54, 175–183. (doi:10.1139/G10-107).
    • (2011) Genome , vol.54 , pp. 175-183
    • Bento, M.1    Gustafson, J.P.2    Viegas, W.3    Silva, M.4
  • 52
    • 70449588694 scopus 로고    scopus 로고
    • Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids
    • 840
    • Ha M et al. 2009 Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proc. Natl Acad. Sci. USA 106, 17 835–17 840. (doi:10.1073/pnas.0907003106).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , Issue.17 , pp. 835-917
    • Ha, M.1
  • 54
    • 84886468148 scopus 로고    scopus 로고
    • Transposons in plant speciation
    • (ed. NV Fedoroff, Ames, IA: John Wiley and Sons Ltd
    • Levy AA. 2013 Transposons in plant speciation. In Plant transposons and genome dynamics in evolution (ed. NV Fedoroff), pp. 165–176. Ames, IA: John Wiley and Sons Ltd.
    • (2013) Plant Transposons and Genome Dynamics in Evolution , pp. 165-176
    • Levy, A.A.1


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