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Volumn 369, Issue 1648, 2014, Pages

Genomics of homoploid hybrid speciation: Diversity and transcriptional activity of long terminal repeat retrotransposons in hybrid sunflowers

Author keywords

Genome evolution; Helianthus; Hybridization; RNAseq; Transposable elements

Indexed keywords

DICOTYLEDON; EVOLUTIONARY BIOLOGY; FUNCTIONAL ROLE; GENE EXPRESSION; GENOMICS; HYBRID; HYBRIDIZATION; PLOIDY; SPECIATION (BIOLOGY);

EID: 84902968540     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2013.0345     Document Type: Article
Times cited : (39)

References (104)
  • 1
    • 0001061506 scopus 로고
    • The chromosomes. Their numbers and general importance
    • Winge O. 1917 The chromosomes. Their numbers and general importance. Comp. Rend. Travaux Lab. Carlsberg Copenhague 13, 131-275.
    • (1917) Comp. Rend. Travaux Lab. Carlsberg Copenhague , vol.13 , pp. 131-275
    • Winge, O.1
  • 3
    • 0004042690 scopus 로고
    • New York, NY: Columbia University Press
    • Grant V. 1981 Plant speciation. New York, NY: Columbia University Press.
    • (1981) Plant speciation
    • Grant, V.1
  • 8
    • 33947219934 scopus 로고    scopus 로고
    • Hybrid speciation
    • (doi:10.1038/nature05706)
    • Mallet J. 2007 Hybrid speciation. Nature 446, 279-283. (doi:10.1038/nature05706)
    • (2007) Nature , vol.446 , pp. 279-283
    • Mallet, J.1
  • 9
    • 84872519378 scopus 로고    scopus 로고
    • Hybridization and speciation
    • (doi:10.1111/j.1420-9101.2012.02599.x)
    • Abbott R et al. 2013 Hybridization and speciation. J. Evol. Biol. 26, 229-246. (doi:10.1111/j.1420-9101.2012.02599.x)
    • (2013) J. Evol. Biol. , vol.26 , pp. 229-246
    • Abbott, R.1
  • 10
    • 0000087683 scopus 로고
    • Hybridization between the sunflower species Helianthus annuus and H. petiolaris
    • (doi:10.2307/2405326)
    • Heiser Jr CB. 1947 Hybridization between the sunflower species Helianthus annuus and H. petiolaris. Evolution 1, 249-262. (doi:10.2307/2405326)
    • (1947) Evolution , vol.1 , pp. 249-262
    • Heiser Jr., C.B.1
  • 11
    • 0000766361 scopus 로고
    • A cytogenetic study of inversion in Zea mays
    • Morgan DT. 1950 A cytogenetic study of inversion in Zea mays. Genetics 35, 153.
    • (1950) Genetics , vol.35 , pp. 153
    • Morgan, D.T.1
  • 13
    • 0000787672 scopus 로고
    • The inviability, weakness, and sterility of interspecific hybrids
    • (doi:10.1016/s0065-2660(08)60162-5)
    • Stebbins GL. 1958 The inviability, weakness, and sterility of interspecific hybrids. Adv. Genet. Incorporating Mol. Genet. Med. 9, 147-215. (doi:10.1016/s0065-2660(08)60162-5)
    • (1958) Adv. Genet. Incorporating Mol. Genet. Med. , vol.9 , pp. 147-215
    • Stebbins, G.L.1
  • 14
    • 33846543858 scopus 로고    scopus 로고
    • Heterosis: Revisiting the magic
    • (doi:10.1016/j.tig.2006.12.006)
    • Lippman ZB, Zamir D. 2007 Heterosis: revisiting the magic. Trends Genet. 23, 60-66. (doi:10.1016/j.tig.2006.12.006)
    • (2007) Trends Genet. , vol.23 , pp. 60-66
    • Lippman, Z.B.1    Zamir, D.2
  • 16
    • 0000164805 scopus 로고
    • On the sterility of the interracial hybrids in Drosophila pseudoobscura
    • (doi:10.1073/pnas.19.4.397)
    • Dobzhansky T. 1933 On the sterility of the interracial hybrids in Drosophila pseudoobscura. Proc. Natl Acad. Sci. USA 19, 397-403. (doi:10.1073/pnas.19.4.397)
    • (1933) Proc. Natl Acad. Sci. USA , vol.19 , pp. 397-403
    • Dobzhansky, T.1
  • 17
    • 0017035844 scopus 로고
    • Genetic and biochemical consequences of polyploid in Tragopogon
    • (doi:10.2307/2407821)
    • Roose ML, Gottlieb LD. 1976 Genetic and biochemical consequences of polyploid in Tragopogon. Evolution 30, 818-830. (doi:10.2307/2407821)
    • (1976) Evolution , vol.30 , pp. 818-830
    • Roose, M.L.1    Gottlieb, L.D.2
  • 18
    • 0036909354 scopus 로고    scopus 로고
    • Neopolyploidy in flowering plants
    • (doi:10.1146/annurev.ecolysis.33.010802.150437)
    • Ramsey J, Schemske DW. 2002 Neopolyploidy in flowering plants. Annu. Rev. Ecol. Syst. 33, 589-639. (doi:10.1146/annurev.ecolysis.33.010802.150437)
    • (2002) Annu. Rev. Ecol. Syst. , vol.33 , pp. 589-639
    • Ramsey, J.1    Schemske, D.W.2
  • 19
    • 0034044903 scopus 로고    scopus 로고
    • The likelihood of homoploid hybrid speciation
    • (doi:10.1046/j.1365-2540.2000.00680.x)
    • Buerkle CA, Morris RJ, Asmussen MA, Rieseberg LH. 2000 The likelihood of homoploid hybrid speciation. Heredity 84, 441-451. (doi:10.1046/j.1365-2540.2000.00680.x)
    • (2000) Heredity , vol.84 , pp. 441-451
    • Buerkle, C.A.1    Morris, R.J.2    Asmussen, M.A.3    Rieseberg, L.H.4
  • 20
    • 0035400604 scopus 로고    scopus 로고
    • Theory and speciation
    • (doi:10.1016/s0169-5347(01)02177-2)
    • Turelli M, Barton NH, Coyne JA. 2001 Theory and speciation. Trends Ecol. Evol. 16, 330-343. (doi:10.1016/s0169-5347(01)02177-2)
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 330-343
    • Turelli, M.1    Barton, N.H.2    Coyne, J.A.3
  • 21
    • 3042750437 scopus 로고    scopus 로고
    • Sunderland, MA: Sinauer Associates
    • Coyne JA, Orr HA. 2004 Speciation. Sunderland, MA: Sinauer Associates.
    • (2004) Speciation
    • Coyne, J.A.1    Orr, H.A.2
  • 22
    • 0002883117 scopus 로고
    • Mechanisms of speciation: A population genetic approach
    • (doi:10.1146/annurev.es.12.110181.000323)
    • Templeton AR. 1981 Mechanisms of speciation: a population genetic approach. Annu. Rev. Ecol. Syst. 12, 23-48. (doi:10.1146/annurev.es.12.110181.000323)
    • (1981) Annu. Rev. Ecol. Syst. , vol.12 , pp. 23-48
    • Templeton, A.R.1
  • 23
    • 0031465850 scopus 로고    scopus 로고
    • Hybrid origins of plant species
    • (doi:10.1146/ annurev.ecolsys.28.1.359)
    • Rieseberg LH. 1997 Hybrid origins of plant species. Annu. Rev. Ecol. Syst. 28, 359-389. (doi:10.1146/ annurev.ecolsys.28.1.359)
    • (1997) Annu. Rev. Ecol. Syst. , vol.28 , pp. 359-389
    • Rieseberg, L.H.1
  • 25
    • 0038403049 scopus 로고    scopus 로고
    • The origin of ecological divergence in Helianthus paradoxus (Asteraceae): Selection on transgressive characters in a novel hybrid habitat
    • (doi:10.1111/j.0014-3820.2003.tb00379.x)
    • Lexer C, Welch ME, Raymond O, Rieseberg LH. 2003 The origin of ecological divergence in Helianthus paradoxus (Asteraceae): selection on transgressive characters in a novel hybrid habitat. Evolution 57, 1989-2000. (doi:10.1111/j.0014-3820.2003.tb00379.x)
    • (2003) Evolution , vol.57 , pp. 1989-2000
    • Lexer, C.1    Welch, M.E.2    Raymond, O.3    Rieseberg, L.H.4
  • 26
    • 11444270247 scopus 로고    scopus 로고
    • Selection on leaf ecophysiological traits in a desert hybrid Helianthus species and earlygeneration hybrids
    • (doi:10.1111/j.0014-3820.2004.tb01621.x)
    • Ludwig F, Rosenthal DM, Johnston JA, Kane N, Gross BL, Lexer C, Dudley SA, Rieseberg LH, Donovan LA. 2004 Selection on leaf ecophysiological traits in a desert hybrid Helianthus species and earlygeneration hybrids. Evolution 58, 2682-2692. (doi:10.1111/j.0014-3820.2004.tb01621.x)
    • (2004) Evolution , vol.58 , pp. 2682-2692
    • Ludwig, F.1    Rosenthal, D.M.2    Johnston, J.A.3    Kane, N.4    Gross, B.L.5    Lexer, C.6    Dudley, S.A.7    Rieseberg, L.H.8    Donovan, L.A.9
  • 27
    • 84857687296 scopus 로고    scopus 로고
    • Differential response of the homoploid hybrid species Iris nelsonii (Iridaceae) and its progenitors to abiotic habitat conditions
    • (doi:10.3732/ajb.1100012)
    • Taylor SJ, Willard RW, Shaw JP, Dobson MC, Martin NH. 2011 Differential response of the homoploid hybrid species Iris nelsonii (Iridaceae) and its progenitors to abiotic habitat conditions. Am. J. Bot. 98, 1309-1316. (doi:10.3732/ajb.1100012)
    • (2011) Am. J. Bot. , vol.98 , pp. 1309-1316
    • Taylor, S.J.1    Willard, R.W.2    Shaw, J.P.3    Dobson, M.C.4    Martin, N.H.5
  • 28
    • 71249148097 scopus 로고    scopus 로고
    • Enhanced drought-tolerance in the homoploid hybrid species Pinus densata: Implication for its habitat divergence from two progenitors
    • (doi:10.1111/j.1469-8137.2009.03037.x)
    • Ma F, Zhao CM, Milne R, Ji MF, Chen LT, Liu JQ. 2010 Enhanced drought-tolerance in the homoploid hybrid species Pinus densata: implication for its habitat divergence from two progenitors. New Phytol. 185, 204-216. (doi:10.1111/j.1469-8137.2009.03037.x)
    • (2010) New Phytol. , vol.185 , pp. 204-216
    • Ma, F.1    Zhao, C.M.2    Milne, R.3    Ji, M.F.4    Chen, L.T.5    Liu, J.Q.6
  • 29
    • 84871050876 scopus 로고    scopus 로고
    • Genomic collinearity and the genetic architecture of floral differences between the homoploid hybrid species Iris nelsonii and one of its progenitors, Iris hexagona
    • (doi:10.1038/hdy.2012.62)
    • Taylor SJ, Rojas LD, Ho SW, Martin NH. 2013 Genomic collinearity and the genetic architecture of floral differences between the homoploid hybrid species Iris nelsonii and one of its progenitors, Iris hexagona. Heredity 110, 63-70. (doi:10.1038/hdy.2012.62)
    • (2013) Heredity , vol.110 , pp. 63-70
    • Taylor, S.J.1    Rojas, L.D.2    Ho, S.W.3    Martin, N.H.4
  • 30
    • 0029046245 scopus 로고
    • Hybrid speciation accompanied by genomic reorganization in wild sunflowers
    • (doi:10.1038/375313a0)
    • Rieseberg LH, Vanfossen C, Desrochers AM. 1995 Hybrid speciation accompanied by genomic reorganization in wild sunflowers. Nature 375, 313-316. (doi:10.1038/375313a0)
    • (1995) Nature , vol.375 , pp. 313-316
    • Rieseberg, L.H.1    Vanfossen, C.2    Desrochers, A.M.3
  • 31
    • 26444444258 scopus 로고    scopus 로고
    • Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species
    • (doi:10.1534/ genetics.105.042242)
    • Lai Z. 2005 Extensive chromosomal repatterning and the evolution of sterility barriers in hybrid sunflower species. Genetics 171, 291-303. (doi:10.1534/ genetics.105.042242)
    • (2005) Genetics , vol.171 , pp. 291-303
    • Lai, Z.1
  • 32
    • 30344467525 scopus 로고    scopus 로고
    • Recent, allopatric, homoploid hybrid speciation: The origin of Senecio squalidus (Asteraceae) in the British Isles from a hybrid zone on Mount Etna, Sicily
    • (doi:10.1111/j.0014-3820.2005. tb00967.x)
    • James JK, Abbott RJ. 2005 Recent, allopatric, homoploid hybrid speciation: the origin of Senecio squalidus (Asteraceae) in the British Isles from a hybrid zone on Mount Etna, Sicily. Evolution 59, 2533-2547. (doi:10.1111/j.0014-3820.2005. tb00967.x)
    • (2005) Evolution , vol.59 , pp. 2533-2547
    • James, J.K.1    Abbott, R.J.2
  • 33
    • 0000458918 scopus 로고
    • The hybrid origin of microspecies in the Elymus glaucuscomplex
    • Stebbins GL. 1957 The hybrid origin of microspecies in the Elymus glaucuscomplex. Cytol. Suppl. 36, 336-340.
    • (1957) Cytol. Suppl. , vol.36 , pp. 336-340
    • Stebbins, G.L.1
  • 34
    • 0000585231 scopus 로고
    • Genetic evidence for the hybrid origin of the diploid plant Stephanomeria diegensis
    • (doi:10.2307/2408150)
    • Gallez GP, Gottlieb LD. 1982 Genetic evidence for the hybrid origin of the diploid plant Stephanomeria diegensis. Evolution 36, 1158-1167. (doi:10.2307/2408150)
    • (1982) Evolution , vol.36 , pp. 1158-1167
    • Gallez, G.P.1    Gottlieb, L.D.2
  • 35
    • 70349316724 scopus 로고    scopus 로고
    • Population genetic analysis reveals a homoploid hybrid origin of Stephanomeria diegensis (Asteraceae)
    • (doi:10.1111/j.1365-294X.2009.04349.x)
    • Sherman NA, Burke JM. 2009 Population genetic analysis reveals a homoploid hybrid origin of Stephanomeria diegensis (Asteraceae). Mol. Ecol. 18, 4049-4060. (doi:10.1111/j.1365-294X.2009.04349.x)
    • (2009) Mol. Ecol. , vol.18 , pp. 4049-4060
    • Sherman, N.A.1    Burke, J.M.2
  • 36
    • 15944425091 scopus 로고    scopus 로고
    • The ecological genetics of homoploid hybrid speciation
    • (doi:10.1093/jhered/esi026)
    • Gross BL, Rieseberg LH. 2005 The ecological genetics of homoploid hybrid speciation. J. Hered. 96, 241-252. (doi:10.1093/jhered/esi026)
    • (2005) J. Hered. , vol.96 , pp. 241-252
    • Gross, B.L.1    Rieseberg, L.H.2
  • 37
    • 52649119690 scopus 로고    scopus 로고
    • Homoploid hybrid speciation in animals
    • (doi:10.1111/j.1365-294X.2008.03898.x)
    • Mavarez J, Linares M. 2007 Homoploid hybrid speciation in animals. Mol. Ecol. 17, 4181-4185. (doi:10.1111/j.1365-294X.2008.03898.x)
    • (2007) Mol. Ecol. , vol.17 , pp. 4181-4185
    • Mavarez, J.1    Linares, M.2
  • 38
    • 79956373603 scopus 로고    scopus 로고
    • Hybrid origin of Audubon's warbler
    • (doi:10.1111/j.1365-294X.2011.05055.x)
    • Brelsford A, Mila B, Irwin DE. 2011 Hybrid origin of Audubon's warbler. Mol. Ecol. 20, 2380-2389. (doi:10.1111/j.1365-294X.2011.05055.x)
    • (2011) Mol. Ecol. , vol.20 , pp. 2380-2389
    • Brelsford, A.1    Mila, B.2    Irwin, D.E.3
  • 39
    • 80052517949 scopus 로고    scopus 로고
    • Hybrid speciation in sparrows I: Phenotypic intermediacy, genetic admixture and barriers to gene flow
    • (doi:10.1111/j.1365-294X.2011.05183.x)
    • Hermansen JS, Saether SA, Elgvin TO, Borge T, Hjelle E, Saetre G-P. 2011 Hybrid speciation in sparrows I: phenotypic intermediacy, genetic admixture and barriers to gene flow. Mol. Ecol. 20, 3812-3822. (doi:10.1111/j.1365-294X.2011.05183.x)
    • (2011) Mol. Ecol. , vol.20 , pp. 3812-3822
    • Hermansen, J.S.1    Saether, S.A.2    Elgvin, T.O.3    Borge, T.4    Hjelle, E.5    Saetre, G.-P.6
  • 40
    • 0030049365 scopus 로고    scopus 로고
    • Role of gene interactions in hybrid speciation: Evidence from ancient and experimental hybrids
    • (doi:10.1126/ science.272.5262.741)
    • Rieseberg LH, Sinervo B, Linder CR, Ungerer MC, Arias DM. 1996 Role of gene interactions in hybrid speciation: evidence from ancient and experimental hybrids. Science 272, 741-745. (doi:10.1126/ science.272.5262.741)
    • (1996) Science , vol.272 , pp. 741-745
    • Rieseberg, L.H.1    Sinervo, B.2    Linder, C.R.3    Ungerer, M.C.4    Arias, D.M.5
  • 41
    • 33645503260 scopus 로고    scopus 로고
    • Microarray analysis reveals differential gene expression in hybrid sunflower species
    • (doi:10.1111/j.1365-294X.2006.02775.x)
    • Lai Z, Gross BL, Zou YI, Andrews J, Rieseberg LH. 2006 Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol. Ecol. 15, 1213-1227. (doi:10.1111/j.1365-294X.2006.02775.x)
    • (2006) Mol. Ecol. , vol.15 , pp. 1213-1227
    • Lai, Z.1    Gross, B.L.2    Zou, Y.I.3    Andrews, J.4    Rieseberg, L.H.5
  • 42
    • 13144275312 scopus 로고    scopus 로고
    • Hybrid speciation in plants: New insights from molecular studies
    • (doi:10.1111/j.1469-8137.2004.01253.x)
    • Hegarty MJ, Hiscock SJ. 2005 Hybrid speciation in plants: new insights from molecular studies. New Phytol. 165, 411-423. (doi:10.1111/j.1469-8137.2004.01253.x)
    • (2005) New Phytol. , vol.165 , pp. 411-423
    • Hegarty, M.J.1    Hiscock, S.J.2
  • 43
    • 60549083735 scopus 로고    scopus 로고
    • Extreme changes to gene expression associated with homoploid hybrid speciation
    • (doi:10.1111/j. 1365-294X.2008.04054.x)
    • Hegarty MJ, Barker GL, Brennan AC, Edwards KJ, Abbott RJ, Hiscock SJ. 2009 Extreme changes to gene expression associated with homoploid hybrid speciation. Mol. Ecol. 18, 877-889. (doi:10.1111/j. 1365-294X.2008.04054.x)
    • (2009) Mol. Ecol. , vol.18 , pp. 877-889
    • Hegarty, M.J.1    Barker, G.L.2    Brennan, A.C.3    Edwards, K.J.4    Abbott, R.J.5    Hiscock, S.J.6
  • 44
    • 70349706091 scopus 로고    scopus 로고
    • The genomic organization of TY3/gypsy-like retrotransposons in Helianthus (Asteraceae) homoploid hybrid species
    • (doi:10.3732/ajb.0800337)
    • Staton SE, Ungerer MC, Moore RC. 2009 The genomic organization of TY3/gypsy-like retrotransposons in Helianthus (Asteraceae) homoploid hybrid species. Am. J. Bot. 96, 1646-1655. (doi:10.3732/ajb.0800337)
    • (2009) Am. J. Bot. , vol.96 , pp. 1646-1655
    • Staton, S.E.1    Ungerer, M.C.2    Moore, R.C.3
  • 45
    • 67651052323 scopus 로고    scopus 로고
    • The role of hybridization in plant speciation
    • (doi:10.1146/annurev.arplant.043008.092039)
    • Soltis PS, Soltis DE. 2009 The role of hybridization in plant speciation. Annu. Rev. Plant Biol. 60, 561-588. (doi:10.1146/annurev.arplant.043008.092039)
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 561-588
    • Soltis, P.S.1    Soltis, D.E.2
  • 47
    • 84875989311 scopus 로고    scopus 로고
    • Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression
    • (doi:10.1371/journal.pgen.1003366)
    • Dunn B et al. 2013 Recurrent rearrangement during adaptive evolution in an interspecific yeast hybrid suggests a model for rapid introgression. PLoS Genet. 9, e1003366. (doi:10.1371/journal.pgen.1003366)
    • (2013) PLoS Genet. , vol.9
    • Dunn, B.1
  • 48
    • 0028856370 scopus 로고
    • Chromosomal and genic barriers to introgression in Helianthus
    • Rieseberg LH, Linder C, Seiler GJ. 1995 Chromosomal and genic barriers to introgression in Helianthus. Genetics 141, 1163-1171.
    • (1995) Genetics , vol.141 , pp. 1163-1171
    • Rieseberg, L.H.1    Linder, C.2    Seiler, G.J.3
  • 49
    • 33750018038 scopus 로고    scopus 로고
    • Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation
    • (doi:10.1016/j.cub.2006.09.020)
    • Ungerer MC, Strakosh SC, Zhen Y. 2006 Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation. Curr. Biol. 16, R872-R873. (doi:10.1016/j.cub.2006.09.020)
    • (2006) Curr. Biol. , vol.16
    • Ungerer, M.C.1    Strakosh, S.C.2    Zhen, Y.3
  • 50
    • 68249158010 scopus 로고    scopus 로고
    • Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data
    • (doi:10.1186/1741-7007-7-40)
    • Ungerer MC, Strakosh SC, Stimpson KM. 2009 Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data. BMC Biol. 7, 40. (doi:10.1186/1741-7007-7-40)
    • (2009) BMC Biol. , vol.7 , pp. 40
    • Ungerer, M.C.1    Strakosh, S.C.2    Stimpson, K.M.3
  • 51
    • 84455206395 scopus 로고    scopus 로고
    • Adaptation to P element transposon invasion in Drosophila melanogaster
    • (doi:10.1016/j.cell.2011.11.042)
    • Khurana JS et al. 2011 Adaptation to P element transposon invasion in Drosophila melanogaster. Cell 147, 1551-1563. (doi:10.1016/j.cell.2011.11.042)
    • (2011) Cell , vol.147 , pp. 1551-1563
    • Khurana, J.S.1
  • 52
    • 0036715287 scopus 로고    scopus 로고
    • Likely multiple origins of a diploid hybrid sunflower species
    • (doi:10.1046/j.1365-294X.2002.01557.x)
    • Schwarzbach AE, Rieseberg LH. 2002 Likely multiple origins of a diploid hybrid sunflower species. Mol. Ecol. 11, 1703-1715. (doi:10.1046/j.1365-294X.2002.01557.x)
    • (2002) Mol. Ecol. , vol.11 , pp. 1703-1715
    • Schwarzbach, A.E.1    Rieseberg, L.H.2
  • 53
    • 0036208789 scopus 로고    scopus 로고
    • Habitat divergence between a homoploid hybrid sunflower species, Helianthus paradoxus (Asteraceae), and its progenitors
    • (doi:10.3732/ ajb.89.3.472)
    • Welch ME, Rieseberg LH. 2002 Habitat divergence between a homoploid hybrid sunflower species, Helianthus paradoxus (Asteraceae), and its progenitors. Am. J. Bot. 89, 472-478. (doi:10.3732/ ajb.89.3.472)
    • (2002) Am. J. Bot. , vol.89 , pp. 472-478
    • Welch, M.E.1    Rieseberg, L.H.2
  • 54
    • 0347972695 scopus 로고    scopus 로고
    • Origin(s) of the diploid hybrid species Helianthus deserticola (Asteraceae)
    • (doi:10.3732/ajb.90.12.1708)
    • Gross BL, Schwarzbach AE, Rieseberg LH. 2003 Origin(s) of the diploid hybrid species Helianthus deserticola (Asteraceae). Am. J. Bot. 90, 1708-1719. (doi:10.3732/ajb.90.12.1708)
    • (2003) Am. J. Bot. , vol.90 , pp. 1708-1719
    • Gross, B.L.1    Schwarzbach, A.E.2    Rieseberg, L.H.3
  • 55
    • 0001305620 scopus 로고
    • Molecular tests of the hypothesized hybrid origin of 2 diploid Helianthus species (Asteraceae)
    • (doi:10.2307/2409332)
    • Rieseberg LH, Carter R, Zona S. 1990 Molecular tests of the hypothesized hybrid origin of 2 diploid Helianthus species (Asteraceae). Evolution 44, 1498-1511. (doi:10.2307/2409332)
    • (1990) Evolution , vol.44 , pp. 1498-1511
    • Rieseberg, L.H.1    Carter, R.2    Zona, S.3
  • 56
    • 0000157317 scopus 로고
    • Homoploid reticulate evolution in Helianthus (Asteraceae): Evidence from ribosomal genes
    • (doi:10.2307/2444926)
    • Rieseberg LH. 1991 Homoploid reticulate evolution in Helianthus (Asteraceae): evidence from ribosomal genes. Am. J. Bot. 78, 1218-1237. (doi:10.2307/2444926)
    • (1991) Am. J. Bot. , vol.78 , pp. 1218-1237
    • Rieseberg, L.H.1
  • 58
    • 0042178293 scopus 로고    scopus 로고
    • Major ecological transitions in wild sunflowers facilitated by hybridization
    • (doi:10.1126/science.1086949)
    • Rieseberg LH et al. 2003 Major ecological transitions in wild sunflowers facilitated by hybridization. Science 301, 1211-1216. (doi:10.1126/science.1086949)
    • (2003) Science , vol.301 , pp. 1211-1216
    • Rieseberg, L.H.1
  • 59
    • 4143135287 scopus 로고    scopus 로고
    • Reconstructing the origin of Helianthus deserticola: Survival and selection on the desert floor
    • (doi:10.1086/422223)
    • Gross BL, Kane NC, Lexer C, Ludwig F, Rosenthal DM, Donovan LA, Rieseberg LH. 2004 Reconstructing the origin of Helianthus deserticola: survival and selection on the desert floor. Am. Nat. 164, 145-156. (doi:10.1086/422223)
    • (2004) Am. Nat. , vol.164 , pp. 145-156
    • Gross, B.L.1    Kane, N.C.2    Lexer, C.3    Ludwig, F.4    Rosenthal, D.M.5    Donovan, L.A.6    Rieseberg, L.H.7
  • 60
    • 0033911592 scopus 로고    scopus 로고
    • Crossing relationships among ancient and experimental sunflower hybrid lineages
    • (doi:10.1111/j.0014-3820.2000.tb00086.x)
    • Rieseberg LH. 2000 Crossing relationships among ancient and experimental sunflower hybrid lineages. Evolution 54, 859-865. (doi:10.1111/j.0014-3820.2000.tb00086.x)
    • (2000) Evolution , vol.54 , pp. 859-865
    • Rieseberg, L.H.1
  • 61
  • 62
    • 39749118087 scopus 로고    scopus 로고
    • The rate of genome stabilization in homoploid hybrid species
    • (doi:10.1111/j.1558-5646.2007.00267.x)
    • Buerkle CA, Rieseberg LH. 2008 The rate of genome stabilization in homoploid hybrid species. Evolution 62, 266-275. (doi:10.1111/j.1558-5646.2007.00267.x)
    • (2008) Evolution , vol.62 , pp. 266-275
    • Buerkle, C.A.1    Rieseberg, L.H.2
  • 63
    • 25144483942 scopus 로고    scopus 로고
    • Hybridization and genome size evolution: Timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species
    • (doi:10.1111/j.1469-8137.2005.01433.x)
    • Baack EJ, Whitney KD, Rieseberg LH. 2005 Hybridization and genome size evolution: timing and magnitude of nuclear DNA content increases in Helianthus homoploid hybrid species. New Phytol. 167, 623-630. (doi:10.1111/j.1469-8137.2005.01433.x)
    • (2005) New Phytol. , vol.167 , pp. 623-630
    • Baack, E.J.1    Whitney, K.D.2    Rieseberg, L.H.3
  • 64
    • 33845190150 scopus 로고    scopus 로고
    • Parasitism and the retrotransposon life cycle in plants: A hitchhiker's guide to the genome
    • (doi:10.1038/sj.hdy.6800903)
    • Sabot F, Schulman AH. 2006 Parasitism and the retrotransposon life cycle in plants: a hitchhiker's guide to the genome. Heredity 97, 381-388. (doi:10.1038/sj.hdy.6800903)
    • (2006) Heredity , vol.97 , pp. 381-388
    • Sabot, F.1    Schulman, A.H.2
  • 65
    • 66449124318 scopus 로고    scopus 로고
    • Epigenetic regulation of transposable elements in plants
    • (doi:10.1146/annurev.arplant.59.032607.092744)
    • Lisch D. 2009 Epigenetic regulation of transposable elements in plants. Annu. Rev. Plant Biol. 60, 43-66. (doi:10.1146/annurev.arplant.59.032607.092744)
    • (2009) Annu. Rev. Plant Biol. , vol.60 , pp. 43-66
    • Lisch, D.1
  • 66
    • 0030207150 scopus 로고    scopus 로고
    • Plant retrotransposons: Turned on by stress
    • (doi:10.1016/S0960-9822(02)00638-3)
    • Wessler SR. 1996 Plant retrotransposons: turned on by stress. Curr. Biol. 6, 3. (doi:10.1016/S0960-9822(02)00638-3)
    • (1996) Curr. Biol. , vol.6 , pp. 3
    • Wessler, S.R.1
  • 67
    • 0032080772 scopus 로고    scopus 로고
    • Activation of plant retrotransposons under stress conditions
    • (doi:10.1016/S1360-1385(98)01232-1)
    • Grandbastien MA. 1998 Activation of plant retrotransposons under stress conditions. Trends Plant Sci. 3, 181-187. (doi:10.1016/S1360-1385(98)01232-1)
    • (1998) Trends Plant Sci. , vol.3 , pp. 181-187
    • Grandbastien, M.A.1
  • 68
    • 77950091162 scopus 로고    scopus 로고
    • Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species
    • (doi:10.1038/hdy.2009.182)
    • Kawakami T, Strakosh SC, Zhen Y, Ungerer MC. 2010 Different scales of Ty1/copia-like retrotransposon proliferation in the genomes of three diploid hybrid sunflower species. Heredity 104, 341-350. (doi:10.1038/hdy.2009.182)
    • (2010) Heredity , vol.104 , pp. 341-350
    • Kawakami, T.1    Strakosh, S.C.2    Zhen, Y.3    Ungerer, M.C.4
  • 69
    • 79958286960 scopus 로고    scopus 로고
    • Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons
    • (doi:10.1093/gbe/evr005)
    • Kawakami T, Dhakal P, Katterhenry AN, Heatherington CA, Ungerer MC. 2011 Transposable element proliferation and genome expansion are rare in contemporary sunflower hybrid populations despite widespread transcriptional activity of LTR retrotransposons. Genome Biol. Evol. 3, 156-167. (doi:10.1093/gbe/evr005)
    • (2011) Genome Biol. Evol. , vol.3 , pp. 156-167
    • Kawakami, T.1    Dhakal, P.2    Katterhenry, A.N.3    Heatherington, C.A.4    Ungerer, M.C.5
  • 70
    • 84876513478 scopus 로고    scopus 로고
    • Transcriptional dynamics of LTR retrotransposons in early generation and ancient sunflower hybrids
    • (doi:10.1093/gbe/evt006)
    • Ungerer MC, Kawakami T. 2013 Transcriptional dynamics of LTR retrotransposons in early generation and ancient sunflower hybrids. Genome Biol. Evol. 5, 329-337. (doi:10.1093/gbe/evt006)
    • (2013) Genome Biol. Evol. , vol.5 , pp. 329-337
    • Ungerer, M.C.1    Kawakami, T.2
  • 72
    • 84879414858 scopus 로고    scopus 로고
    • Genomic resources notes accepted 1 February 2013-31 March 2013
    • Genomic Resources Development Consortium, (doi:10.1111/1755-0998.12123)
    • Genomic Resources Development Consortium, King MG, Renaut S, Rieseberg LH, Rowe HC. 2013 Genomic resources notes accepted 1 February 2013-31 March 2013. Mol. Ecol. Resour. 13, 759. (doi:10.1111/1755-0998.12123)
    • (2013) Mol. Ecol. Resour. , vol.13 , pp. 759
    • King, M.G.1    Renaut, S.2    Rieseberg, L.H.3    Rowe, H.C.4
  • 73
    • 84878009380 scopus 로고    scopus 로고
    • Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility
    • (doi:10.1096/fj.10-170639)
    • Rowe HC, Rieseberg LH. 2013 Genome-scale transcriptional analyses of first-generation interspecific sunflower hybrids reveals broad regulatory compatibility. BMC Genomics 14, 342. (doi:10.1096/fj.10-170639)
    • (2013) BMC Genomics , vol.14 , pp. 342
    • Rowe, H.C.1    Rieseberg, L.H.2
  • 74
    • 84901302218 scopus 로고    scopus 로고
    • Sequence-based analysis of structural organization and composition of the cultivated sunflower (Helianthus annuus L.) genome
    • (doi:10.3390/biology3020295)
    • Gill N, Buti M, Kane N, Bellec A, Helmstetter N, Berges H, Rieseberg LH. 2014 Sequence-based analysis of structural organization and composition of the cultivated sunflower (Helianthus annuus L.) genome. Biology 3, 295-319. (doi:10.3390/biology3020295)
    • (2014) Biology , vol.3 , pp. 295-319
    • Gill, N.1    Buti, M.2    Kane, N.3    Bellec, A.4    Helmstetter, N.5    Berges, H.6    Rieseberg, L.H.7
  • 75
    • 45549089420 scopus 로고    scopus 로고
    • High-throughput functional annotation and data mining with the Blast2GO suite
    • (doi:10.1093/nar/gkn176)
    • Gotz S et al. 2008 High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 36, 3420-3435. (doi:10.1093/nar/gkn176)
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3420-3435
    • Gotz, S.1
  • 76
    • 84866730704 scopus 로고    scopus 로고
    • The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements
    • (doi:10.1111/j.1365-313X.2012.05072.x)
    • Staton SE et al. 2012 The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements. Plant J. 72, 142-153. (doi:10.1111/j.1365-313X.2012.05072.x)
    • (2012) Plant J. , vol.72 , pp. 142-153
    • Staton, S.E.1
  • 77
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • (doi:10.1093/ bioinformatics/btp324)
    • Li H, Durbin R. 2009 Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760. (doi:10.1093/ bioinformatics/btp324)
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 78
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • (doi:10.1093/ bioinformatics/btq033)
    • Quinlan AR, Hall IM. 2010 BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842. (doi:10.1093/ bioinformatics/btq033)
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 79
  • 80
    • 77958471357 scopus 로고    scopus 로고
    • Differential expression analysis for sequence count data
    • (doi:10.1186/gb-2010-11-10-r106)
    • Anders S, Huber W. 2010 Differential expression analysis for sequence count data. Genome Biol. 11, R106. (doi:10.1186/gb-2010-11-10-r106)
    • (2010) Genome Biol. , vol.11
    • Anders, S.1    Huber, W.2
  • 81
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • (doi:10.1111/1467-9868.00346)
    • Storey JD. 2002 A direct approach to false discovery rates. J. Royal Stat. Soc. B (Stat. Methodol.) 64, 479-498. (doi:10.1111/1467-9868.00346)
    • (2002) J. Royal Stat. Soc. B (Stat. Methodol.) , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 82
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • (doi:10.1038/nmeth.1226)
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. 2008 Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods 5, 621-628. (doi:10.1038/nmeth.1226)
    • (2008) Nat. Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 84
    • 70349278339 scopus 로고    scopus 로고
    • Selective epigenetic control of retrotransposition in Arabidopsis
    • (doi:10.1038/nature08328)
    • Mirouze M et al. 2009 Selective epigenetic control of retrotransposition in Arabidopsis. Nature 461, 427-430. (doi:10.1038/nature08328)
    • (2009) Nature , vol.461 , pp. 427-430
    • Mirouze, M.1
  • 85
    • 70349276670 scopus 로고    scopus 로고
    • Bursts of retrotransposition reproduced in Arabidopsis
    • (doi:10.1038/nature08351)
    • Tsukahara S, Kobayashi A, Kawabe A, Mathieu O, Miura A, Kakutani T. 2009 Bursts of retrotransposition reproduced in Arabidopsis. Nature 461, 423-426. (doi:10.1038/nature08351)
    • (2009) Nature , vol.461 , pp. 423-426
    • Tsukahara, S.1    Kobayashi, A.2    Kawabe, A.3    Mathieu, O.4    Miura, A.5    Kakutani, T.6
  • 86
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • (doi:10.1186/1471-2105-9-559.)
    • Langfelder P, Horvath S. 2008 WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 9, 559. (doi:10.1186/1471-2105-9-559.)
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 87
    • 30744470609 scopus 로고    scopus 로고
    • Application of phylogenetic networks in evolutionary studies
    • (doi:10.1093/molbev/msj030)
    • Huson DH. 2005 Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 23, 254-267. (doi:10.1093/molbev/msj030)
    • (2005) Mol. Biol. Evol. , vol.23 , pp. 254-267
    • Huson, D.H.1
  • 88
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAM tools
    • (doi:10.1093/bioinformatics/btp352)
    • Li H et al. 2009 The sequence alignment/map format and SAM tools. Bioinformatics 25, 2078-2079. (doi:10.1093/bioinformatics/btp352)
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 89
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population-structure
    • (doi:10.2307/2408641)
    • Weir B, Cockerham CC. 1984 Estimating F-statistics for the analysis of population-structure. Evolution 38, 1358-1370. (doi:10.2307/2408641)
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.1    Cockerham, C.C.2
  • 90
    • 14844359279 scopus 로고    scopus 로고
    • HIERFSTAT, a package for R to compute and test hierarchical F-statistics
    • (doi:10.1111/j.1471-8278.2004.00828.x)
    • Goudet J. 2005 HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Mol. Ecol. 5, 184-186. (doi:10.1111/j.1471-8278.2004.00828.x)
    • (2005) Mol. Ecol. , vol.5 , pp. 184-186
    • Goudet, J.1
  • 91
    • 84901309593 scopus 로고    scopus 로고
    • See, (accessed on 08 October 2012)
    • SITES (Hey Lab Distributed Software). See http:// genfaculty.rutgers.edu/hey/%E2%80%A8software# SITES/ (accessed on 08 October 2012).
    • SITES (Hey Lab Distributed Software)
  • 92
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the ADH locus in Drosophila
    • (doi:10.1038/351652a0)
    • McDonald JH, Kreitman M. 1991 Adaptive protein evolution at the ADH locus in Drosophila. Nature 351, 652-654. (doi:10.1038/351652a0)
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 93
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • (doi:10.1038/4151022a)
    • Smith NGC, Eyre-Walker A. 2002 Adaptive protein evolution in Drosophila. Nature 415, 1022-1024. (doi:10.1038/4151022a)
    • (2002) Nature , vol.415 , pp. 1022-1024
    • Smith, N.G.C.1    Eyre-Walker, A.2
  • 95
    • 0033598804 scopus 로고    scopus 로고
    • PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis
    • (doi:10.1073/ pnas.96.24.13839)
    • Ogas J, Kaufmann S, Henderson J, Somerville C. 1999 PICKLE is a CHD3 chromatin-remodeling factor that regulates the transition from embryonic to vegetative development in Arabidopsis. Proc. Natl Acad. Sci. USA 96, 13 839-13 844. (doi:10.1073/ pnas.96.24.13839)
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 13839-13844
    • Ogas, J.1    Kaufmann, S.2    Henderson, J.3    Somerville, C.4
  • 96
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • (doi:10.1126/science.15739260)
    • McClintock B. 1984 The significance of responses of the genome to challenge. Science 226, 792-810. (doi:10.1126/science.15739260)
    • (1984) Science , vol.226 , pp. 792-810
    • McClintock, B.1
  • 97
    • 57749186418 scopus 로고    scopus 로고
    • Epigenetic, transposon and small RNA determinants of hybrid dysfunctions
    • (doi:10.1038/hdy.2008.48)
    • Michalak P. 2009 Epigenetic, transposon and small RNA determinants of hybrid dysfunctions. Heredity 102, 45-50. (doi:10.1038/hdy.2008.48)
    • (2009) Heredity , vol.102 , pp. 45-50
    • Michalak, P.1
  • 98
    • 84879553798 scopus 로고    scopus 로고
    • The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity
    • (doi:10.4161/mge.21111)
    • de Meaux J, Pecinka A. 2012 The Arabidopsis genus: an emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genet. Elem. 2, 142-144. (doi:10.4161/mge.21111)
    • (2012) Mobile Genet. Elem. , vol.2 , pp. 142-144
    • de Meaux, J.1    Pecinka, A.2
  • 99
    • 77958149797 scopus 로고    scopus 로고
    • Transcriptional activity of transposable elements in maize
    • (doi:10.1186/1471-2164-11-601)
    • Vicient C. 2010 Transcriptional activity of transposable elements in maize. BMC Genomics 11, 601. (doi:10.1186/1471-2164-11-601)
    • (2010) BMC Genomics , vol.11 , pp. 601
    • Vicient, C.1
  • 100
    • 84886541754 scopus 로고    scopus 로고
    • EXCAVATOR: Detecting copy number variants from whole-exome sequencing data
    • (doi:10.1186/gb-2013-14-10-r120)
    • Magi A et al. 2013 EXCAVATOR: detecting copy number variants from whole-exome sequencing data. Genome Biol. 14, R120. (doi:10.1186/gb-2013-14-10-r120)
    • (2013) Genome Biol. , vol.14
    • Magi, A.1
  • 101
    • 84881611362 scopus 로고    scopus 로고
    • Transposable elements and microevolutionary changes in natural populations
    • (doi:10.1111/1755-0998.12133)
    • Bonchev G, Parisod C. 2013 Transposable elements and microevolutionary changes in natural populations. Mol. Ecol. Resour. 13, 765-775. (doi:10.1111/1755-0998.12133)
    • (2013) Mol. Ecol. Resour. , vol.13 , pp. 765-775
    • Bonchev, G.1    Parisod, C.2
  • 102
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • (doi:10.1038/nrg2072)
    • Slotkin RK, Martienssen R. 2007 Transposable elements and the epigenetic regulation of the genome. Nat. Rev. Genet. 8, 272-285. (doi:10.1038/nrg2072)
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 103
    • 38549103015 scopus 로고    scopus 로고
    • Combining population genomics and quantitative genetics: Finding the genes underlying ecologically important traits
    • (doi:10.1038/sj.hdy.6800937)
    • Stinchcombe JR, Hoekstra HE. 2007 Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits. Heredity 100, 158-170. (doi:10.1038/sj.hdy.6800937)
    • (2007) Heredity , vol.100 , pp. 158-170
    • Stinchcombe, J.R.1    Hoekstra, H.E.2
  • 104
    • 33745668459 scopus 로고    scopus 로고
    • Parentdependent loss of gene silencing during interspecies hybridization
    • (doi:10.1016/j.cub.2006.05.045)
    • Josefsson C, Dilkes B, Comai L. 2006 Parentdependent loss of gene silencing during interspecies hybridization. Curr. Biol. 16, 1322-1328. (doi:10.1016/j.cub.2006.05.045)
    • (2006) Curr. Biol. , vol.16 , pp. 1322-1328
    • Josefsson, C.1    Dilkes, B.2    Comai, L.3


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