Detecting regime shifts in artificial ecosystems

Proceedings of the 12th European Conference on the Synthesis and Simulation of Living Systems: Advances in Artificial Life, ECAL 2013

Volumn , Issue , 2013, Pages 625-632

  Chávez, Vasthi Alonso ^a   Patrick Doncaster, C ^a   Dearing, John A ^a   Wang, Rong ^a   Huang, Jing Lun ^a   Dyke, James G ^a  

^a UNIVERSITY OF SOUTHAMPTON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; CARBON DIOXIDE; DEFORESTATION; EARTH ATMOSPHERE; SEARCH ENGINES;

ARTIFICIAL ECOSYSTEMS; ARTIFICIAL LIFE; COMMUNITY STRUCTURES; EARLY WARNING; ECOSYSTEM STRUCTURE; MODEL ECOSYSTEMS; REGIME SHIFT; SHARP TRANSITION; SPATIAL AND TEMPORAL SCALE; WARNING SIGNALS;

ECOSYSTEMS;

EID: 84923257145     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.7551/978-0-262-31709-2-ch089     Document Type: Conference Paper

References (32)

1. Allen, A. P., Li, B.-L., and Charnov, E. L. (2001). Population fluctuations, power laws and mixtures of lognormal distributions. Ecology Letters, 4(1):1-3.
2. Almeida-Neto, M., R Guimaraes Jr, P., and M Lewinsohn, T. (2007). On nestedness analyses: rethinking matrix temperature and anti-nestedness. Oikos, 116(4):716-722.
3. Almeida-Neto, M. and Ulrich, W. (2011). A straightforward computational approach for measuring nestedness using quantitative matrices. Environmental Modelling & Software, 26(2):173-178.
4. Atmar, W. and Patterson, B. D. (1993). The measure of order and disorder in the distribution of species in fragmented habitat. Oecologia, 96(3):373-382.
5. Carpenter, S. and Brock, W. (2006). Rising variance: A leading indicator of ecological transition. Ecology letters, 9(3):311- 318.
6. Cutler, A. (1991). Nested faunas and extinction in fragmented habitats. Conservation Biology, 5(4):496-504.
7. Elmendorf, S. C. and Harrison, S. P. (2009). Temporal variability and nestedness in california grassland species composition. Ecology, 90(6):1492-1497.
8. Fischer, J. and Lindenmayer, D. B. (2005). Nestedness in fragmented landscapes: A case study on birds, arboreal marsupials and lizards. Journal of Biogeography, 32(10):1737-1750.
9. Guttal, V. and Jayaprakash, C. (2008). Changing skewness: An early warning signal of regime shifts in ecosystems. Ecology Letters, 11(5):450-460.
10. Hastings, A. and Wysham, D. B. (2010). Regime shifts in ecological systems can occur with no warning. Ecology Letters, 13(4):464-472.
11. Heino, J., Mykrä, H., and Muotka, T. (2009). Temporal variability of nestedness and idiosyncratic species in stream insect assemblages. Diversity and Distributions, 15(2):198-206.
12. Hill, M. O. (1973). Diversity and evenness: A unifying notation and its consequences. Ecology, 54(2):427-432.
13. Jones, C. G., Lawton, J. H., and Shachak, M. (1994). Organisms as ecosystem engineers. Oikos, 69:373-386.
14. Krebs, V. (2012). Community networks. http://www.Thenetworkthinkers.com.
15. Lenton, T., Livina, V., Dakos, V., Van Nes, E., and Scheffer, M. (2012). Early warning of climate tipping points from critical slowing down: comparing methods to improve robustness. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 370(1962):1185-1204.
16. Magurran, A. E. and Magurran, A. E. (1988). Ecological diversity and its measurement, volume 168. Princeton university press Princeton.
17. May, R. M. (1973). Complexity and stability in model ecosystems. Princeton University Press, New Jersey.
18. McCann, K. S. (2000). The diversity?stability debate. Nature, 405(6783):228-233.
19. Mitzenmacher, M. (2004). A brief history of generative models for power law and lognormal distributions. Internet mathematics, 1(2):226-251.
20. Montoya, J. M., Pimm, S. L., and Soĺe, R. V. (2006). Ecological networks and their fragility. Nature, 442(7100):259-264.
21. Oksanen, J. (2012). Design decisions and implementation details in vegan. http://mirrors.dotsrc.org/ pub/pub/mirrors/cran/web/packages/vegan/ vignettes/decision-vegan.pdf.
22. Patterson, B. D. and Atmar, W. (1986). Nested subsets and the structure of insular mammalian faunas and archipelagos. Biological Journal of the Linnean Society, 28(1-2):65-82.
23. Rodŕiguez-Girońes, M. A. and Santamaŕia, L. (2006). A new algorithm to calculate the nestedness temperature of presence? absence matrices. Journal of Biogeography, 33(5):924-935.
24. Scheffer, M., Bascompte, J., Brock, W. A., Brovkin, V., Carpenter, S. R., Dakos, V., Held, H., Van Nes, E. H., Rietkerk, M., and Sugihara, G. (2009). Early-warning signals for critical transitions. Nature, 461(7260):53-59.
25. Scheffer, M., Carpenter, S., Foley, J. A., Folke, C., and Walker, B. (2001). Catastrophic shifts in ecosystems. Nature, 413(6856):591-596.
26. Scheffer, M., Carpenter, S. R., Lenton, T. M., Bascompte, J., Brock, W., Dakos, V., van de Koppel, J., van de Leemput, I. A., Levin, S. A., van Nes, E. H., et al. (2012). Anticipating critical transitions. Science, 338(6105):344-348.
27. Scheffer, M. and Nes, E. H. (2007). Shallow lakes theory revisited: various alternative regimes driven by climate, nutrients, depth and lake size. Shallow Lakes in a Changing World, pages 455-466.
28. Simpson, E. H. (1949). Measurement of diversity. Nature, 163(4148):688.
29. Strogatz, S. H. (2001). Exploring complex networks. Nature, 410(6825):268-276.
30. Timi, J. T. and Poulin, R. (2008). Different methods, different results: Temporal trends in the study of nested subset patterns in parasite communities. Parasitology, 135(1):131.
31. Ulrich, W., Almeida-Neto, M., and Gotelli, N. J. (2008). A consumer?s guide to nestedness analysis. Oikos, 118(1):3-17.
32. Wang, R., Dearing, J. A., Langdon, P. G., Zhang, E., Yang, X., Dakos, V., and Scheffer, M. (2012). Flickering gives early warning signals of a critical transition to a eutrophic lake state. Nature, 492(7429):419-422.