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Volumn 3, Issue , 2014, Pages

FALCON: A software package for analysis of nestedness in bipartite networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BIPARTITE NETWORK; COMPUTER ANALYSIS; COMPUTER PROGRAM; INTERMETHOD COMPARISON; MATHEMATICAL MODEL; MATHEMATICAL PHENOMENA; NESTEDNESS; PROCESS DEVELOPMENT; SCORING SYSTEM; STATISTICAL PARAMETERS; STATISTICAL SIGNIFICANCE; VALIDATION PROCESS;

EID: 84923250410     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.4831.1     Document Type: Article
Times cited : (39)

References (43)
  • 1
    • 0027331799 scopus 로고
    • The measure of order and disorder in the distribution of species in fragmented habitat
    • Atmar W Patterson BD: The measure of order and disorder in the distribution of species in fragmented habitat. Oecologia. 1993;96(3):373-382. 10.1007/BF00317508
    • (1993) Oecologia , vol.96 , Issue.3 , pp. 373-382
    • Atmar, W.1    Patterson, B.D.2
  • 2
    • 0032938427 scopus 로고    scopus 로고
    • Nested species subsets, gaps, and discrepancy
    • Brualdi RA Sanderson JG: Nested species subsets, gaps, and discrepancy. Oecologia. 1999;119(2):256-264. 10.1007/s004420050784
    • (1999) Oecologia , vol.119 , Issue.2 , pp. 256-264
    • Brualdi, R.A.1    Sanderson, J.G.2
  • 3
    • 0042424615 scopus 로고    scopus 로고
    • The nested assembly of plant-animal mutualistic networks
    • 12881488, 170927
    • Bascompte J Jordano P Melián CJ: The nested assembly of plant-animal mutualistic networks. Proc Natl Acad Sci U S A. 2003;100(16):9383-9387. 12881488 10.1073/pnas.1633576100 170927
    • (2003) Proc Natl Acad Sci U S A , vol.100 , Issue.16 , pp. 9383-9387
    • Bascompte, J.1    Jordano, P.2    Melián, C.J.3
  • 4
    • 84863667044 scopus 로고    scopus 로고
    • Disentangling nestedness from models of ecological complexity
    • 22722863
    • James A Pitchford JW Plank MJ: Disentangling nestedness from models of ecological complexity. Nature. 2012;487(7406):227-230. 22722863 10.1038/nature11214
    • (2012) Nature , vol.487 , Issue.7406 , pp. 227-230
    • James, A.1    Pitchford, J.W.2    Plank, M.J.3
  • 5
    • 79961015810 scopus 로고    scopus 로고
    • Statistical structure of host-phage interactions
    • 21709225, 3136311
    • Flores CO Meyer JR Valverde S: Statistical structure of host-phage interactions. Proc Natl Acad Sci U S A. 2011;108(28):E288-E297. 21709225 10.1073/pnas.1101595108 3136311
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.28 , pp. E288-E297
    • Flores, C.O.1    Meyer, J.R.2    Valverde, S.3
  • 6
    • 84876476680 scopus 로고    scopus 로고
    • Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages
    • 23178671, 3578562
    • Flores CO Valverde S Weitz JS: Multi-scale structure and geographic drivers of cross-infection within marine bacteria and phages. ISME J. 2013;7(3):520-532. 23178671 10.1038/ismej.2012.135 3578562
    • (2013) ISME J , vol.7 , Issue.3 , pp. 520-532
    • Flores, C.O.1    Valverde, S.2    Weitz, J.S.3
  • 7
    • 84886712023 scopus 로고    scopus 로고
    • Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks
    • 24516719, 3915849
    • Beckett SJ Williams HT: Coevolutionary diversification creates nested-modular structure in phage-bacteria interaction networks. Interface Focus. 2013;3(6):20130033. 24516719 10.1098/rsfs.2013.0033 3915849
    • (2013) Interface Focus , vol.3 , Issue.6 , pp. 20130033
    • Beckett, S.J.1    Williams, H.T.2
  • 8
    • 77955625829 scopus 로고    scopus 로고
    • Stability of ecological communities and the architecture of mutualistic and trophic networks
    • 20705861
    • Thébault E Fontaine C: Stability of ecological communities and the architecture of mutualistic and trophic networks. Science. 2010;329(5993):853-856. 20705861 10.1126/science.1188321
    • (2010) Science , vol.329 , Issue.5993 , pp. 853-856
    • Thébault, E.1    Fontaine, C.2
  • 9
    • 80054036798 scopus 로고    scopus 로고
    • Strong contributors to network persistence are the most vulnerable to extinction
    • 21918515
    • Saavedra S Stouffer DB Uzzi B: Strong contributors to network persistence are the most vulnerable to extinction. Nature. 2011;478(7368):233-235. 21918515 10.1038/nature10433
    • (2011) Nature , vol.478 , Issue.7368 , pp. 233-235
    • Saavedra, S.1    Stouffer, D.B.2    Uzzi, B.3
  • 10
    • 84869745008 scopus 로고    scopus 로고
    • The dynamics of nestedness predicts the evolution of industrial ecosystems
    • 23185326, 3501524
    • Bustos S Gomez C Hausmann R: The dynamics of nestedness predicts the evolution of industrial ecosystems. PLoS One. 2012;7(11):e49393. 23185326 10.1371/journal.pone.0049393 3501524
    • (2012) PLoS One , vol.7 , Issue.11 , pp. e49393
    • Bustos, S.1    Gomez, C.2    Hausmann, R.3
  • 11
    • 84879137197 scopus 로고    scopus 로고
    • The ghost of nestedness in ecological networks
    • 23340431
    • Staniczenko PP Kopp JC Allesina S: The ghost of nestedness in ecological networks. Nat Commun. 2013;4:1391. 23340431 10.1038/ncomms2422
    • (2013) Nat Commun , vol.4 , pp. 1391
    • Staniczenko, P.P.1    Kopp, J.C.2    Allesina, S.3
  • 12
    • 84873746132 scopus 로고    scopus 로고
    • Host-parasite nestedness: A result of co-evolving trait-values
    • McQuaid CF Britton NF: Host-parasite nestedness: A result of co-evolving trait-values. Ecol Complexity. 2013;13:53-59. 10.1016/j.ecocom.2013.01.001
    • (2013) Ecol Complexity , vol.13 , pp. 53-59
    • McQuaid, C.F.1    Britton, N.F.2
  • 13
    • 84892678460 scopus 로고    scopus 로고
    • The sudden collapse of pollinator communities
    • 24386999
    • Lever JJ van Nes EH Scheffer M: The sudden collapse of pollinator communities. Ecol Lett. 2014;17(3):350-359. 24386999 10.1111/ele.12236
    • (2014) Ecol Lett , vol.17 , Issue.3 , pp. 350-359
    • Lever, J.J.1    van Nes, E.H.2    Scheffer, M.3
  • 14
    • 0033860925 scopus 로고    scopus 로고
    • Null model analysis of species co-occurrence patterns
    • Gotelli NJ: Null model analysis of species co-occurrence patterns. Ecology. 2000;81(9):2606-2621. 10.1890/0012-9658(2000)081[2606:NMAOSC]2.0.CO;2
    • (2000) Ecology , vol.81 , Issue.9 , pp. 2606-2621
    • Gotelli, N.J.1
  • 15
    • 34548414185 scopus 로고    scopus 로고
    • Null model analysis of species nestedness patterns
    • 17645028
    • Ulrich W Gotelli NJ: Null model analysis of species nestedness patterns. Ecology. 2007;88(7):1824-1831. 17645028 10.1890/06-1208.1
    • (2007) Ecology , vol.88 , Issue.7 , pp. 1824-1831
    • Ulrich, W.1    Gotelli, N.J.2
  • 16
    • 84896354155 scopus 로고    scopus 로고
    • Structure and dynamics of core/periphery networks
    • Csermely P London A Wu L: Structure and dynamics of core/periphery networks. J Complex Networks. 2013;1(2):93-123. 10.1093/comnet/cnt016
    • (2013) J Complex Networks , vol.1 , Issue.2 , pp. 93-123
    • Csermely, P.1    London, A.2    Wu, L.3
  • 17
    • 33645964285 scopus 로고    scopus 로고
    • A new algorithm to calculate the nestedness temperature of presence-absence matrices
    • Rodríguez-Gironés MA Santamaría L: A new algorithm to calculate the nestedness temperature of presence-absence matrices. J Biogeogr. 2006;33(5):924-935. 10.1111/j.1365-2699.2006.01444.x
    • (2006) J Biogeogr , vol.33 , Issue.5 , pp. 924-935
    • Rodríguez-Gironés, M.A.1    Santamaría, L.2
  • 18
    • 33745837839 scopus 로고    scopus 로고
    • Improving the analyses of nestedness for large sets of matrices
    • Guimarães PR Guimarães P: Improving the analyses of nestedness for large sets of matrices. Environ Model Softw. 2006;21(10):1512-1513. 10.1016/j.envsoft.2006.04.002
    • (2006) Environ Model Softw , vol.21 , Issue.10 , pp. 1512-1513
    • Guimarães, P.R.1    Guimarães, P.2
  • 19
    • 67650774722 scopus 로고    scopus 로고
    • Introducing the bipartite package: Analysing ecological networks
    • Reference Source
    • Dormann CF Gruber B Fruend J: Introducing the bipartite package: Analysing ecological networks. R News. 2008;8(2):8-11. Reference Source
    • (2008) R News , vol.8 , Issue.2 , pp. 8-11
    • Dormann, C.F.1    Gruber, B.2    Fruend, J.3
  • 20
    • 78049304633 scopus 로고    scopus 로고
    • A straightforward computational approach for measuring nestedness using quantitative matrices
    • Almeida-Neto M Ulrich W: A straightforward computational approach for measuring nestedness using quantitative matrices. Environ Model Softw. 2011;26(2):173-178. 10.1016/j.envsoft.2010.08.003
    • (2011) Environ Model Softw , vol.26 , Issue.2 , pp. 173-178
    • Almeida-Neto, M.1    Ulrich, W.2
  • 21
    • 70349255569 scopus 로고    scopus 로고
    • vegan: Community Ecology Package
    • Reference Source, R package version 2.0-10.
    • Oksanen J Guillaume Blanchet F Kindt R: vegan: Community Ecology Package. R package version 2.0-10.2013. Reference Source
    • (2013)
    • Oksanen, J.1    Guillaume Blanchet, F.2    Kindt, R.3
  • 22
    • 84923217414 scopus 로고    scopus 로고
    • FALCON: nestedness statistics for bipartite networks
    • Data Source
    • Beckett SJ Boulton CA Williams HT: FALCON: nestedness statistics for bipartite networks.2014. Data Source
    • (2014)
    • Beckett, S.J.1    Boulton, C.A.2    Williams, H.T.3
  • 23
    • 0003537167 scopus 로고
    • Outline of the history of arctic and boreal biota during the Quaternary period: their evolution during and after the glacial period as indicated by the equiformal progressive areas of present plant species
    • 1, Reference Source, Bokförlags Aktiebolaget Thule.;
    • Hultén E: Outline of the history of arctic and boreal biota during the Quaternary period: their evolution during and after the glacial period as indicated by the equiformal progressive areas of present plant species. Bokförlags Aktiebolaget Thule.1937; 1:168. Reference Source
    • (1937) , pp. 168
    • Hultén, E.1
  • 24
    • 0003701765 scopus 로고
    • Zoogeography: the geographical distribution of animals
    • Reference Source, Wiley, New York,;.
    • Darlington PJ: Zoogeography: the geographical distribution of animals. Wiley, New York,1957;676. Reference Source
    • (1957) , pp. 676
    • Darlington, P.J.1
  • 25
    • 0002741475 scopus 로고
    • Floristic plant geography of eastern Washington and northern idaho
    • Daubenmire R: Floristic plant geography of eastern Washington and northern idaho. J Biogeogr. 1975;2(1):1-18. 10.2307/3038197
    • (1975) J Biogeogr , vol.2 , Issue.1 , pp. 1-18
    • Daubenmire, R.1
  • 26
    • 58149122738 scopus 로고    scopus 로고
    • A consumer's guide to nestedness analysis
    • Ulrich W Almeida-Neto M Gotelli NJ: A consumer's guide to nestedness analysis. Oikos. 2009;118(1):3-17. 10.1111/j.1600-0706.2008.17053.x
    • (2009) Oikos , vol.118 , Issue.1 , pp. 3-17
    • Ulrich, W.1    Almeida-Neto, M.2    Gotelli, N.J.3
  • 27
    • 84898771284 scopus 로고    scopus 로고
    • Geothermal activity helps life survive glacial cycles
    • 24616489, 3992698
    • Fraser CI Terauds A Smellie J: Geothermal activity helps life survive glacial cycles. Proc Natl Acad Sci U S A. 2014;111(15):5634-5639. 24616489 10.1073/pnas.1321437111 3992698
    • (2014) Proc Natl Acad Sci U S A , vol.111 , Issue.15 , pp. 5634-5639
    • Fraser, C.I.1    Terauds, A.2    Smellie, J.3
  • 28
    • 84857566449 scopus 로고    scopus 로고
    • The relationship between species replacement, dissimilarity derived from nestedness, and nestedness
    • Baselga A: The relationship between species replacement, dissimilarity derived from nestedness, and nestedness. Glob Ecol Biogeogr. 2012;21(12):1223-1232. 10.1111/j.1466-8238.2011.00756.x
    • (2012) Glob Ecol Biogeogr , vol.21 , Issue.12 , pp. 1223-1232
    • Baselga, A.1
  • 29
    • 77955590909 scopus 로고    scopus 로고
    • Nestedness versus modularity in ecological networks: two sides of the same coin?
    • 20374411
    • Fortuna MA Stouffer DB Olesen JM: Nestedness versus modularity in ecological networks: two sides of the same coin? J Anim Ecol. 2010;79(4):811-817. 20374411 10.1111/j.1365-2656.2010.01688.x
    • (2010) J Anim Ecol , vol.79 , Issue.4 , pp. 811-817
    • Fortuna, M.A.1    Stouffer, D.B.2    Olesen, J.M.3
  • 30
    • 76049125230 scopus 로고    scopus 로고
    • On nestedness in ecological networks
    • Reference Source
    • Joppa LN Montoya JM Solé R: On nestedness in ecological networks. Evol Ecol Res. 2010;12:35-46. Reference Source
    • (2010) Evol Ecol Res , vol.12 , pp. 35-46
    • Joppa, L.N.1    Montoya, J.M.2    Solé, R.3
  • 31
    • 84923257145 scopus 로고    scopus 로고
    • Detecting regime shifts in artificial ecosystems
    • Advances in Artificial Life, In
    • Chávez VA Doncaster CP Dearing JA: Detecting regime shifts in artificial ecosystems. In Advances in Artificial Life. ECAL. 2013;12:625-632. 10.7551/978-0-262-31709-2-ch089
    • (2013) ECAL , vol.12 , pp. 625-632
    • Chávez, V.A.1    Doncaster, C.P.2    Dearing, J.A.3
  • 32
    • 84859432768 scopus 로고    scopus 로고
    • Structure and mechanism of diet specialisation: testing models of individual variation in resource use with sea otters
    • Jr, 22414160
    • Tim Tinker M Guimarães PR Jr Novak M: Structure and mechanism of diet specialisation: testing models of individual variation in resource use with sea otters. Ecol Lett. 2012;15(5):475-483. 22414160 10.1111/j.1461-0248.2012.01760.x
    • (2012) Ecol Lett , vol.15 , Issue.5 , pp. 475-483
    • Tim Tinker, M.1    Guimarães, P.R.2    Novak, M.3
  • 33
    • 84888873680 scopus 로고    scopus 로고
    • Historical climate-change influences modularity and nestedness of pollination networks
    • Dalsgaard B Trøjelsgaard K González AMM: Historical climate-change influences modularity and nestedness of pollination networks. Ecography. 2013;36(12):1331-1340. 10.1111/j.1600-0587.2013.00201.x
    • (2013) Ecography , vol.36 , Issue.12 , pp. 1331-1340
    • Dalsgaard, B.1    Trøjelsgaard, K.2    González, A.M.M.3
  • 34
    • 84878768318 scopus 로고    scopus 로고
    • Methodological advances in the analysis of bipartite networks: an illustration using board interlocks in Indian firms
    • Reference Source
    • Piepenbrink A Gaur AS: Methodological advances in the analysis of bipartite networks: an illustration using board interlocks in Indian firms. Organ Res Meth. 2013;16(3):474-496. Reference Source
    • (2013) Organ Res Meth , vol.16 , Issue.3 , pp. 474-496
    • Piepenbrink, A.1    Gaur, A.S.2
  • 35
    • 84902117341 scopus 로고    scopus 로고
    • treenodf: nestedness to phylogenetic, functional and other tree-based diversity metrics
    • Melo AS Cianciaruso MV Almeida-Neto M: treenodf: nestedness to phylogenetic, functional and other tree-based diversity metrics. Methods Ecol Evol. 2014;5(6):563-572. 10.1111/2041-210X.12185
    • (2014) Methods Ecol Evol , vol.5 , Issue.6 , pp. 563-572
    • Melo, A.S.1    Cianciaruso, M.V.2    Almeida-Neto, M.3
  • 36
    • 49249087447 scopus 로고    scopus 로고
    • A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement
    • Almeida-Neto M Guimaraes P Guimarães PR: A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos. 2008;117(8):1227-1239. 10.1111/j.0030-1299.2008.16644.x
    • (2008) Oikos , vol.117 , Issue.8 , pp. 1227-1239
    • Almeida-Neto, M.1    Guimaraes, P.2    Guimarães, P.R.3
  • 37
    • 84864301299 scopus 로고    scopus 로고
    • Nestedness and τ-temperature in ecological networks
    • Corso G Britton NF: Nestedness and τ-temperature in ecological networks. Ecol Compl. 2012;11:137-143. 10.1016/j.ecocom.2012.05.003
    • (2012) Ecol Compl , vol.11 , pp. 137-143
    • Corso, G.1    Britton, N.F.2
  • 38
    • 84884367207 scopus 로고    scopus 로고
    • Factors determining nestedness in complex networks
    • 24069264, 3777946
    • Johnson S Domínguez-García V Muñoz MA: Factors determining nestedness in complex networks. PLoS One. 2013;8(9):e74025. 24069264 10.1371/journal.pone.0074025 3777946
    • (2013) PLoS One , vol.8 , Issue.9 , pp. e74025
    • Johnson, S.1    Domínguez-García, V.2    Muñoz, M.A.3
  • 39
    • 84866769388 scopus 로고    scopus 로고
    • On the meanings of nestedness: back to the basics
    • Ulrich W Almeida-Neto M: On the meanings of nestedness: back to the basics. Ecography. 2012;35(10):865-871. 10.1111/j.1600-0587.2012.07671.x
    • (2012) Ecography , vol.35 , Issue.10 , pp. 865-871
    • Ulrich, W.1    Almeida-Neto, M.2
  • 40
    • 0034956993 scopus 로고    scopus 로고
    • Research frontiers in null model analysis
    • Gotelli NJ: Research frontiers in null model analysis. Glob Ecol Biogeogr. 2001;10(4):337-343. 10.1046/j.1466-822X.2001.00249.x
    • (2001) Glob Ecol Biogeogr , vol.10 , Issue.4 , pp. 337-343
    • Gotelli, N.J.1
  • 41
    • 84902322683 scopus 로고    scopus 로고
    • A fast and unbiased procedure to randomize ecological binary matrices with fixed row and column totals
    • 24916345
    • Strona G Nappo D Boccacci F: A fast and unbiased procedure to randomize ecological binary matrices with fixed row and column totals. Nat Commun. 2014;5:4114. 24916345 10.1038/ncomms5114
    • (2014) Nat Commun , vol.5 , pp. 4114
    • Strona, G.1    Nappo, D.2    Boccacci, F.3
  • 42
    • 84895737111 scopus 로고    scopus 로고
    • When is an ecological network complex? Connectance drives degree distribution and emerging network properties
    • 24688835, 3933003
    • Poisot T Gravel D: When is an ecological network complex? Connectance drives degree distribution and emerging network properties. PeerJ. 2014;2:e251. 24688835 10.7717/peerj.251 3933003
    • (2014) PeerJ , vol.2 , pp. e251
    • Poisot, T.1    Gravel, D.2
  • 43
    • 84864317683 scopus 로고    scopus 로고
    • A comparative evaluation of pairwise nestedness measures
    • Podani J Schmera D: A comparative evaluation of pairwise nestedness measures. Ecography. 2012;35(10):889-900. 10.1111/j.1600-0587.2011.07319.x
    • (2012) Ecography , vol.35 , Issue.10 , pp. 889-900
    • Podani, J.1    Schmera, D.2


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