메뉴 건너뛰기




Volumn 5, Issue 6, 2014, Pages 563-572

treeNODF: Nestedness to phylogenetic, functional and other tree-based diversity metrics

Author keywords

Bats; Community phylogenetics; Ecophylogenetics; Functional diversity; Metacommunities; Nested overlap based on decreasing fill; NODF; Phylogenetic diversity

Indexed keywords


EID: 84902117341     PISSN: None     EISSN: 2041210X     Source Type: Journal    
DOI: 10.1111/2041-210X.12185     Document Type: Article
Times cited : (31)

References (36)
  • 1
    • 84862328335 scopus 로고    scopus 로고
    • Rethinking the relationship between nestedness and beta diversity: a comment on Baselga (2010)
    • Almeida-Neto, M., Frensel, D.M.B. & Ulrich, W. (2012) Rethinking the relationship between nestedness and beta diversity: a comment on Baselga (2010). Global Ecology and Biogeography, 21, 772-777.
    • (2012) Global Ecology and Biogeography , vol.21 , pp. 772-777
    • Almeida-Neto, M.1    Frensel, D.M.B.2    Ulrich, W.3
  • 2
    • 49249087447 scopus 로고    scopus 로고
    • A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement
    • Almeida-Neto, M., Guimarães, P., Guimarães, P.R. Jr, Loyola, R.D. & Ulrich, W. (2008) A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement. Oikos, 117, 1227-1239.
    • (2008) Oikos , vol.117 , pp. 1227-1239
    • Almeida-Neto, M.1    Guimarães, P.2    Guimarães Jr., P.R.3    Loyola, R.D.4    Ulrich, W.5
  • 4
    • 84902101823 scopus 로고    scopus 로고
    • apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.4-4
    • Bortolussi, N., Durand, E., Blum, M. & Francois, O. (2011) apTreeshape: Analyses of Phylogenetic Treeshape. R package version 1.4-4. http://CRAN.R-project.org/package=apTreeshape.
    • (2011)
    • Bortolussi, N.1    Durand, E.2    Blum, M.3    Francois, O.4
  • 7
    • 84866552008 scopus 로고    scopus 로고
    • Geographical patterns of turnover and nestedness-resultant components of allelic diversity among populations
    • Diniz-Filho, J.A.F., Collevatti, R.G., Soares, T.N. & Telles, M.P.C. (2012) Geographical patterns of turnover and nestedness-resultant components of allelic diversity among populations. Genetica, 140, 189-195.
    • (2012) Genetica , vol.140 , pp. 189-195
    • Diniz-Filho, J.A.F.1    Collevatti, R.G.2    Soares, T.N.3    Telles, M.P.C.4
  • 8
    • 0026499429 scopus 로고
    • Conservation evaluation and phylogenetic diversity
    • Faith, D.P. (1992) Conservation evaluation and phylogenetic diversity. Biological Conservation, 61, 1-10.
    • (1992) Biological Conservation , vol.61 , pp. 1-10
    • Faith, D.P.1
  • 9
    • 71649105829 scopus 로고    scopus 로고
    • The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework
    • Faith, D.P., Lozupone, C.A., Nipperess, D. & Knight, R. (2009) The cladistic basis for the phylogenetic diversity (PD) measure links evolutionary features to environmental gradients and supports broad applications of microbial ecology's "phylogenetic beta diversity" framework. International Journal of Molecular Sciences, 10, 4723-4741.
    • (2009) International Journal of Molecular Sciences , vol.10 , pp. 4723-4741
    • Faith, D.P.1    Lozupone, C.A.2    Nipperess, D.3    Knight, R.4
  • 10
    • 33847171828 scopus 로고    scopus 로고
    • Preserving the evolutionary potential of floras in biodiversity hotspots
    • Forest, F., Grenyer, R., Rouget, M., Davies, T.J., Cowling, R.M., Faith, D.P. et al. (2007) Preserving the evolutionary potential of floras in biodiversity hotspots. Nature, 445, 757-760.
    • (2007) Nature , vol.445 , pp. 757-760
    • Forest, F.1    Grenyer, R.2    Rouget, M.3    Davies, T.J.4    Cowling, R.M.5    Faith, D.P.6
  • 11
    • 0033860925 scopus 로고    scopus 로고
    • Null model analysis of species co-occurrence patterns
    • Gotelli, N.J. (2000) Null model analysis of species co-occurrence patterns. Ecology, 81, 2606-2621.
    • (2000) Ecology , vol.81 , pp. 2606-2621
    • Gotelli, N.J.1
  • 13
    • 49649122320 scopus 로고    scopus 로고
    • Testing the spatial phylogenetic structure of local communities: statistical performances of different null models and test statistics on a locally neutral community
    • Hardy, O.J. (2008) Testing the spatial phylogenetic structure of local communities: statistical performances of different null models and test statistics on a locally neutral community. Journal of Ecology, 96, 914-926.
    • (2008) Journal of Ecology , vol.96 , pp. 914-926
    • Hardy, O.J.1
  • 14
    • 33749605422 scopus 로고    scopus 로고
    • Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient
    • Jablonski, D., Roy, K. & Valentine, J.W. (2006) Out of the tropics: evolutionary dynamics of the latitudinal diversity gradient. Science, 314, 102-106.
    • (2006) Science , vol.314 , pp. 102-106
    • Jablonski, D.1    Roy, K.2    Valentine, J.W.3
  • 15
    • 65249089468 scopus 로고    scopus 로고
    • PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals
    • Jones, K.E., Bielby, J., Cardillo, M., Fritz, S.A., O'Dell, J., Orme, C.D.L. et al. (2009) PanTHERIA: a species-level database of life history, ecology, and geography of extant and recently extinct mammals. Ecology, 90, 2648.
    • (2009) Ecology , vol.90 , pp. 2648
    • Jones, K.E.1    Bielby, J.2    Cardillo, M.3    Fritz, S.A.4    O'Dell, J.5    Orme, C.D.L.6
  • 16
    • 0030303315 scopus 로고    scopus 로고
    • Investigating causality of nestedness of insular communities: selective immigrations or extinctions?
    • Lomolino, M.V. (1996) Investigating causality of nestedness of insular communities: selective immigrations or extinctions? Journal of Biogeography, 23, 699-703.
    • (1996) Journal of Biogeography , vol.23 , pp. 699-703
    • Lomolino, M.V.1
  • 17
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone, C. & Knight, R. (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology, 71, 8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 18
    • 4143100355 scopus 로고    scopus 로고
    • Landscape patterns influencing bird assemblages in a fragmented Neotropical cloud forest
    • Martínez-Morales, M.A. (2005) Landscape patterns influencing bird assemblages in a fragmented Neotropical cloud forest. Biological Conservation, 121, 117-126.
    • (2005) Biological Conservation , vol.121 , pp. 117-126
    • Martínez-Morales, M.A.1
  • 19
    • 84902101824 scopus 로고    scopus 로고
    • CommEcol: Community Ecology analyses. URL
    • Melo, A.S. (2013) CommEcol: Community Ecology analyses. URL http://commecol.r-forge.r-project.org/
    • (2013)
    • Melo, A.S.1
  • 20
    • 1042304216 scopus 로고    scopus 로고
    • APE: analyses of phylogenetics and evolution in R language
    • Paradis, E., Claude, J. & Strimmer, K. (2004) APE: analyses of phylogenetics and evolution in R language. Bioinformatics, 20, 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 21
    • 0036098711 scopus 로고    scopus 로고
    • Functional Diversity (FD), species richness, and community composition
    • Petchey, O.L. & Gaston, K.J. (2002) Functional Diversity (FD), species richness, and community composition. Ecology Letters, 5, 402-411.
    • (2002) Ecology Letters , vol.5 , pp. 402-411
    • Petchey, O.L.1    Gaston, K.J.2
  • 23
    • 84863304598 scopus 로고    scopus 로고
    • R Core Team R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL
    • R Core Team (2012) R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.
    • (2012) R: A Language and Environment for Statistical Computing
  • 24
    • 84867364321 scopus 로고    scopus 로고
    • phytools: an R package for phylogenetic comparative biology (and other things)
    • Revell, L.J. (2012) phytools: an R package for phylogenetic comparative biology (and other things). Methods in Ecology and Evolution, 3, 217-223.
    • (2012) Methods in Ecology and Evolution , vol.3 , pp. 217-223
    • Revell, L.J.1
  • 25
    • 0032699377 scopus 로고    scopus 로고
    • The role of island area per se and habitat diversity in the species-area relationships of four Lesser Antillean faunal groups
    • Ricklefs, R.E. & Lovette, I.J. (1999) The role of island area per se and habitat diversity in the species-area relationships of four Lesser Antillean faunal groups. Journal of Animal Ecology, 68, 1142-1160.
    • (1999) Journal of Animal Ecology , vol.68 , pp. 1142-1160
    • Ricklefs, R.E.1    Lovette, I.J.2
  • 27
    • 80054809561 scopus 로고    scopus 로고
    • Substrate roughness affects stream benthic algal diversity, assemblage composition, and nestedness
    • Schneck, F., Schwarzbold, A. & Melo, A.S. (2011) Substrate roughness affects stream benthic algal diversity, assemblage composition, and nestedness. Journal of the North American Benthological Society, 30, 1049-1056.
    • (2011) Journal of the North American Benthological Society , vol.30 , pp. 1049-1056
    • Schneck, F.1    Schwarzbold, A.2    Melo, A.S.3
  • 28
    • 84865160557 scopus 로고    scopus 로고
    • Humidity levels drive reproductive modes and phylogenetic diversity of amphibians in the Brazilian Atlantic Forest
    • Silva, F.R., Almeida-Neto, M., Prado, V.H.M., Haddad, C.F.B. & Rossa-Feres, D.C. (2012) Humidity levels drive reproductive modes and phylogenetic diversity of amphibians in the Brazilian Atlantic Forest. Journal of Biogeography, 39, 1720-1732.
    • (2012) Journal of Biogeography , vol.39 , pp. 1720-1732
    • Silva, F.R.1    Almeida-Neto, M.2    Prado, V.H.M.3    Haddad, C.F.B.4    Rossa-Feres, D.C.5
  • 29
    • 84887212576 scopus 로고    scopus 로고
    • Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities
    • Swenson, N.G. (2009) Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities. PLoS ONE, 4, e4390.
    • (2009) PLoS ONE , vol.4
    • Swenson, N.G.1
  • 30
    • 84866769388 scopus 로고    scopus 로고
    • On the meanings of nestedness: back to the basics
    • Ulrich, W. & Almeida-Neto, M. (2012) On the meanings of nestedness: back to the basics. Ecography, 35, 865-871.
    • (2012) Ecography , vol.35 , pp. 865-871
    • Ulrich, W.1    Almeida-Neto, M.2
  • 31
    • 58149122738 scopus 로고    scopus 로고
    • A consumer's guide to nestedness analysis
    • Ulrich, W., Almeida-Neto, M. & Gotelli, N.J. (2009) A consumer's guide to nestedness analysis. Oikos, 118, 3-17.
    • (2009) Oikos , vol.118 , pp. 3-17
    • Ulrich, W.1    Almeida-Neto, M.2    Gotelli, N.J.3
  • 32
    • 34548414185 scopus 로고    scopus 로고
    • Null model analysis of species nestedness patterns
    • Ulrich, W. & Gotelli, N.J. (2007) Null model analysis of species nestedness patterns. Ecology, 88, 1824-1831.
    • (2007) Ecology , vol.88 , pp. 1824-1831
    • Ulrich, W.1    Gotelli, N.J.2
  • 33
    • 8144220848 scopus 로고    scopus 로고
    • Historical biogeography, ecology and species richness
    • Wiens, J.J. & Donoghue, M.J. (2004) Historical biogeography, ecology and species richness. Trends in Ecology & Evolution, 19, 639-644.
    • (2004) Trends in Ecology & Evolution , vol.19 , pp. 639-644
    • Wiens, J.J.1    Donoghue, M.J.2
  • 35
    • 84858705912 scopus 로고    scopus 로고
    • Macroecology of Caribbean bats: effects of area, elevation, latitude, and hurricane-induced disturbance
    • (eds T.H. Fleming & P.A. Racey) University of Chicago Press, Chicago, Illinois.
    • Willig, M.R., Presley, S.J., Bloch, C.P. & Genoways, H.H. (2010) Macroecology of Caribbean bats: effects of area, elevation, latitude, and hurricane-induced disturbance. Island Bats: Evolution, Ecology, and Conservation (eds T.H. Fleming & P.A. Racey), pp. 216-264. University of Chicago Press, Chicago, Illinois.
    • (2010) Island Bats: Evolution, Ecology, and Conservation , pp. 216-264
    • Willig, M.R.1    Presley, S.J.2    Bloch, C.P.3    Genoways, H.H.4
  • 36
    • 0027028045 scopus 로고
    • On the meaning and measurement of nestedness of species assemblages
    • Wright, D.H. & Reeves, J.H. (1992) On the meaning and measurement of nestedness of species assemblages. Oecologia, 92, 416-428.
    • (1992) Oecologia , vol.92 , pp. 416-428
    • Wright, D.H.1    Reeves, J.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.