Axial plane optical microscopy

Scientific Reports

Volumn 4, Issue , 2014, Pages

  Li, Tongcang ^a,b   Ota, Sadao ^a   Kim, Jeongmin ^a   Wong, Zi Jing ^a   Wang, Yuan ^a,b   Yin, Xiaobo ^a,b   Zhang, Xiang ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEVICE FAILURE ANALYSIS; DEVICES; EQUIPMENT DESIGN; IMAGE ENHANCEMENT; MICROSCOPY; OPTICAL INSTRUMENTATION; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; THREE DIMENSIONAL IMAGING;

EQUIPMENT DESIGN; EQUIPMENT FAILURE ANALYSIS; IMAGE ENHANCEMENT; IMAGING, THREE-DIMENSIONAL; LENSES; MICROSCOPY; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY;

EID: 84922671795     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep07253     Document Type: Article

References (35)

1. Abbe, E. On the Mode of Vision with Objectives of Wide Aperture. J. of the Royal Microscopical Society 4, 20-26 (1884
2. Murayama, M., Pérez-Garci, E., Nevian, T., Bock, T., Senn, W. & Larkum, M. E. Dendritic encoding of sensory stimuli controlled by deep cortical interneurons. Nature 457, 1137-1141 (2009
3. Wang, N., Butler, J. P.&Ingber, D. E. Mechanotransduction across the cell surface and through the cytoskeleton. Science 260, 1124 (1993
4. Ingber, D. E. Cellular mechanotransduction: putting all the pieces together again the FASEB Journal 20, 811 (2006
5. Chaudhuri, O., Parekh, S.H., Lam,W.A.&Fletcher, D. A. Combined atomic force microscopy and side-view optical imaging for mechanical studies of cells. Nat. Methods 6, 383-387 (2009
6. Conchello, J.-A. & Lichtman, J.W. Optical sectioning microscopy. Nat. Methods 2, 920-931 (2005
7. Zhang, T. & Yamaguchi, I. Three-dimensional microscopy with phase-shifting digital holography. Opt. Lett. 23, 1221-1223 (1998
8. Charriére, F. et al. Living specimen tomography by digital holographic microscopy: morphometry of testate amoeba. Opt. Express 14, 7005-7013 (2006
9. Sung, Y. et al. Optical diffraction tomography for high resolution live cell imaging. Opt. Express 17, 266-277 (2009
10. Dunsby, C. Optically sectioned imaging by oblique plane microscopy. Opt. Express 16, 20306-20316 (2008
11. Kumar, S., Wilding, D., Sikkel, M. B., Lyon, A. R., MacLeod, K. T. & Dunsby, C. High-speed 2D and 3D fluorescence microscopy of cardiac myocytes. Opt. Express 19, 13839-13847 (2011
12. Cutrale, F. & Gratton, E. Inclined selective plane illumination microscopy adaptor for conventional microscopes. Micros. Res Tech. 75, 1461-1466 (2012
13. Botcherby, E. J., Booth, M. J., Jus?kaitis, R. & Wilson, T. Real-time slit scanning microscopy in the meridional plane. Opt. Lett. 34, 1504-1506 (2009
14. Botcherby, E. J., Jus?kaitis, R., Booth, M. J. & Wilson, T. Aberration-free optical refocusing in high numerical aperture microscopy. Opt. Lett. 32, 2007-2009 (2007
15. Botcherby, E. J. et al. Aberration-free three-dimensional multiphoton imaging of neuronal activity at kHz rates. PNAS 109, 2919-2924 (2012
16. Anselmi, F., Ventalon, C., Bégue, A., Ogden, D. & Emiliani, V. Three-dimensional imaging and photostimulation by remote-focusing and holographic light patterning. PNAS 108, 19504 (2011
17. Richards, B. & Wolf, E. Electromagnetic diffraction in optical systems. II. Structure of the image field in an aplanatic system. Proc. R. Soc. London. A 253, 358-379 (1959
18. Stamnes, J. J. Waves in Focal Regions (Hilger, Bristol, 1986
19. Sheppard, C. J. R. & Matthews, H. J. Imaging in high-aperture optical systems. JOSA A 4, 1354 (1987
20. Gu, M. Advanced Optical Imaging Theory (Springer, 2000
21. Huisken, J., Swoger, J., Del Bene, F., Wittbrodt, J. & Stelzer, E. H. K. Optical SectioningDeep Inside Live Embryos by Selective Plane Illumination Microscopy. Science 305, 1007-1009 (2004
22. Verveer, P. J. et al.High-resolution three-dimensional imaging of large specimens with light sheet-based microscopy. Nat. Methods 4, 311-313 (2007
23. Mertz, J. Optical sectioning microscopy with planar or structured illumination. Nat. Methods 8, 811-819 (2011
24. Krzic, U., Gunther, S., Saunders, T. E., Streichan, S. J. & Hufnagel, L. Multiview light-sheet microscope for rapid in toto imaging. Nat. Methods 9, 730-733 (2012
25. Tomer, R., Khairy, K., Amat, F. & Keller, P. J. Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy. Nat. Methods 9, 755-763 (2012
26. Dodt, H.-U. et al. Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain. Nat. Methods 4, 331-336 (2007
27. Ahrens, M. B., Orger, M. B., Robson, D. N., Li, J. M. & Keller, P. J. Whole-brain functional imaging at cellular resolution using light-sheet microscopy. Nat. Methods 10, 413-420 (2013
28. Holekamp, T. F., Turaga, D. & Holy, T. E. Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy. Neuron. 57, 661-672 (2008
29. Osten, P. & Margrie, T. W. Mapping brain circuitry with a light microscope. Nature Methods 10, 515-523 (2013
30. Miyamichi, K. et al. Cortical representations of olfactory input by trans-synaptic tracing. Nature 472, 191-196 (2011
31. Chen, Q. et al. Imaging Neural Activity Using Thy1-GCaMP Transgenic Mice. Neuron 76, 297-308 (2012
32. Wu, Y. et al. Inverted selective plane illumination microscopy (iSPIM) enables coupled cell identity lineaging and neurodevelopmental imaging in Caenorhabditis elegans. PNAS 108, 17708 (2011
33. Gao, L., Shao, L., Chen, B.-C. & Betzig, E. 3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy. Nature Protocols 9, 1083 (2014
34. Zanacchi, F. C. et al. Live-cell 3D super-resolution imaging in thick biological samples. Nat. Meth. 8, 1047-1049 (2011
35. Gebhardt, J. C. M. et al. Single-molecule imaging of transcription factor binding to DNA in live mammalian cells. Nat. Meth. 10, 421-426 (2013