Molecular phylogeny and evolutionary history of the Eurasiatic orchid genus Himantoglossum s.l. (Orchidaceae)

Annals of Botany

Volumn 114, Issue 8, 2014, Pages 1609-1626

  Sramkó, Gábor ^a,b   Molnár V , Attila ^b   Hawkins, Julie A ^c   Bateman, Richard M ^d  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^b UNIVERSITY OF DEBRECEN   (Hungary)

^c UNIVERSITY OF READING   (United Kingdom)

^d JODRELL LABORATORY   (United Kingdom)

Author keywords

Dating; Evolution; Himantoglossum s.l.; Hybridization; Incomplete lineage sorting; Internal transcribed spacer; LEAFY; Molecular phylogeny; Molecular phylogeography; NrITS; Orchid; Orchidaceae; Topological incongruence

Indexed keywords

CONSERVATION MANAGEMENT; DATA SET; DIVERGENCE; ENDANGERED SPECIES; ENDEMIC SPECIES; GENE EXPRESSION; GENETIC ANALYSIS; GEOGRAPHICAL REGION; HERB; HYBRIDIZATION; MOLECULAR ANALYSIS; MORPHOLOGY; PHYLOGENY; PLASTID; PLEISTOCENE; POPULATION STRUCTURE; TAXONOMY; TOPOLOGY;

EURASIA;

HIMANTOGLOSSUM; HIMANTOGLOSSUM HIRCINUM; ORCHIDACEAE; SQUAMATA;

PLANT DNA; RIBOSOMAL SPACER DNA; VEGETABLE PROTEIN;

ASIA; BAYES THEOREM; CELL NUCLEUS; EUROPE; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; MOLECULAR CLONING; MOLECULAR EVOLUTION; ORCHIDACEAE; PHYLOGENY; PLANT GENOME; RIBOTYPING; SPECIES DIFFERENCE;

ASIA; BAYES THEOREM; CELL NUCLEUS; CLONING, MOLECULAR; DNA, PLANT; DNA, RIBOSOMAL SPACER; EUROPE; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENOME, PLANT; GEOGRAPHY; ORCHIDACEAE; PHYLOGENY; PLANT PROTEINS; RIBOTYPING; SPECIES SPECIFICITY;

EID: 84922570398     PISSN: 03057364     EISSN: 10958290     Source Type: Journal    
DOI: 10.1093/aob/mcu179     Document Type: Article

References (61)

1. Acevedo Rodriguez A, Mesa Coello R. 2013. 152: Adiciones corologicas de Himantoglossum metlesicsianum (W. P. Teschner) P. Delforge (Orchidaceae): primera cita para la isla de La Palma (Islas Canarias). Botanicá Macaronésica 28: 123-128.
2. Alibertis A, Alibertis C. 1989. Crète (la) n'a pas fini de livrer ses secrets (2). L'Orchidophile 20: 110.
3. Alvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 29: 417-434.
4. Bailey CD, Carr TG, Harris SA, Hughes CE. 2003. Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Molecular Phylogenetics and Evolution 29: 435-455.
5. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, DonoghueMJ. 1995. The ITS region of nuclear ribosomalDNA:a valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
6. Barraclough TG, Savolainen V. 2001. Evolutionary rates and species diversity in flowering plants. Evolution 55: 677-683.
7. BatemanRM. 2012a. Circumscribing genera in the European orchid flora: a subjective critique of recent contributions. Berichte aus den Arbeitskreisen heimische Orchideen Beiheft 8: 94-126.
8. BatemanRM. 2012b. Circumscribing species in the European orchid flora: multiple datasets interpreted in the context of speciation mechanisms. Berichte aus den Arbeitskreisen Heimische Orchideen Beiheft 8: 160-212.
9. Bateman RM, Sexton R. 2008. Is spur length of Platanthera species in the British Isles adaptively optimized or an evolutionary red herring? Watsonia 28: 1-21.
10. Bateman RM, Hollingsworth PM, Preston J, Yi-Bo L, Pridgeon AM, Chase MW. 2003. Molecular phylogenetics and evolution of Orchidinae and selected Habenariinae (Orchidaceae). Botanical Journal of the Linnean Society 142: 1-40.
11. Bateman RM, Rudall PJ, Bidartondo MI, et al. 2014. Speciation via floral heterochrony and apparent mycorrhizal host-switching of endemic butterfly orchids on the Azorean archipelago. American Journal of Botany 101: 1-23.
12. BatemanRM, Rudall PJ, Hawkins JA, Sramkó G. 2013a. Morphometric, molecular, ontogenetic and demographic observations on selected populations of the lizard orchid, Himantoglossum hircinum. New Journal of Botany 3: 122-140.
13. BatemanRM, Rudall PJ, MouraM. 2013b. Systematic revision of Platanthera in the Azorean archipelago: not one but three species, including one of Europe's rarest orchids. PeerJ 1: e218 http://dx. doi. org/10. 7717/peerj. 218.
14. Bernardos S, García-Barriuso M, Leén-Arencibia MC, et al. 2006. A cytotaxonomic study of three endemic orchids of the Canary Islands. Annales Botanici Fennici 43: 161-166.
15. Boberg E, Alexandersson R, Jonsson M, Maad J, Agren J, Nilsson LA. 2014. Pollinator shifts and the evolution of spur length in the moth-pollinated orchid Platanthera bifolia. Annals of Botany 113: 267-275.
16. Calonje M, Martín-Bravo S, Dobes C, et al. 2009. Non-coding nuclear DNA markers in phylogenetic reconstruction. Plant Systematics and Evolution 282: 257-280.
17. Carey PD. 1998. Modelling the spread of Himantoglossum hircinum (L. ) Spreng. at a site in the south of England. Botanical Journal of the Linnean Society 126: 159-172.
18. Carey PD. 1999. Changes in the distribution and abundance of Himantoglossum hircinum (L. ) Sprengel (Orchidaceae) over the last 100 years. Watsonia 22: 353-364.
19. Carine MA. 2005. Spatio-temporal relationships of the Macaronesian endemic flora: a relictual series or window of opportunity? Taxon 54: 895-903.
20. Claessens J, Kleynen J. 2011. The flower of the European orchid: form and function. Published by the authors.
21. Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 487-494.
22. Cornish-Bowden A. 1985. Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984. Nucleic Acids Research 13: 3021-3030.
23. Curto MA, Puppo P, Ferreira D, Nogueira M, Meimberg H. 2012. Development of phylogenetic markers from single-copy nuclear genes for multi locus, species level analyses in the mint family (Lamiaceae). Molecular Phylogenetics and Evolution 63: 758-767.
24. Delforge P. 1999. Contribution taxonomique et nomenclaturale au genere Himantoglossum (Orchidaceae). Naturalistes Belges 80: 387-408.
25. D'Emerico S, BiancoP, MedagliP. 1992. Karyological studies on Orchidaceae. Tribe Ophrydeae, subtribe Serapiadinae. Caryologia 45: 301-311.
26. Devey DS, Bateman RM, Fay MF, Hawkins JA. 2009. Genetic structure and systematic relationships within the Ophrys fuciflora aggregate (Orchidaceae: Orchidinae): high diversity in Kent and a wind-induced discontinuity bisecting the Adriatic. Annals of Botany 104: 483-495.
27. Doyle JJ, Doyle JL. 1987. A rapidDNA isolation procedure for small quantities of fresh leaf tissue. Phytochemistry Bulletin 19: 11-15.
28. Drummond A, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7: 214.
29. Drummond AJ, Ho SYW, Phillips MJ, Rambaut A. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biology 4: e88.
30. Emadzade K, Gehrke B, Peter Linder H, Hörandl E. 2011. The biogeographical history of the cosmopolitan genus Ranunculus L. (Ranunculaceae) in the temperate to meridional zones. Molecular Phylogenetics and Evolution 58: 4-21.
31. Escudero M, Vargas P, Arens P, Ouborg NJ, Luceno M. 2010. The east-west-north colonization history of the Mediterranean and Europe by the coastal plant Carex extensa (Cyperaceae). Molecular Ecology 19: 352-370.
32. Font M, Garcia-Jacas N, Vilatersana R, Roquet C, Susanna A. 2009. Evolution and biogeography of Centaurea section Acrocentron inferred from nuclear and plastid DNA sequence analyses. Annals of Botany 103: 985-997.
33. Fuertes Aguilar J, Nieto Feliner G. 2003. Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae). Molecular Phylogenetics and Evolution 28: 430-447.
34. Good R. 1936. On the distribution of lizard orchid (Himantoglossum hircinum Koch). New Phytologist 35: 142-170.
35. Gustafsson AL, Verola C, Antonelli A. 2010. Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae). BMC Evolutionary Biology 10: 177.
36. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
37. Heled J, Drummond AJ. 2010. Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27: 570-580.
38. Hewitt GM. 1999. Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society 68: 87-112.
39. Hughes CE, Eastwood RJ, Bailey CD. 2006. From famine to feast? Selecting nuclear DNA sequence loci for plant species-level phylogeny reconstruction. Philosophical Transactions of the Royal Society of London B: Biological Sciences 361: 211-225.
40. Ilut DC, Doyle JJ. 2012. Selecting nuclear sequences for fine detail molecular phylogenetic studies in plants: a computational approach and sequence repository. Systematic Botany 37: 7-14.
41. Inda LA, Pimentel M, Chase MW. 2012. Phylogenetics of tribe Orchideae (Orchidaceae: Orchidoideae) based on combinedDNAmatrices: inferences regarding timing of diversification and evolution of pollination syndromes. Annals of Botany 110: 71-90.
42. Juan C, Emerson BC, Oromí P, Hewitt GM. 2000. Colonization and diversification: towards a phylogeographic synthesis for the Canary Islands. Trends in Ecology and Evolution 15: 104-109.
43. Kaiser R. 1993. The scent of orchids: olfactory and chemical investigations. Basel: Editiones Roche.
44. Karatzas I. 2004. Comptoglossum agiasense, eine seltene Hybride von Lesvos. Journal Europäischer Orchideen 36: 951-956.
45. Kasparek M, Grimm U. 1999. European trade in Turkish salep with special reference to Germany. Economic Botany 53: 396-406.
46. KayKM, Whittall JB, Hodges SA. 2006. Asurveyof nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evolutionary Biology 6: 36.
47. Kropf M, Renner S. 2008. Pollinator-mediated selfing in two deceptive orchids and a review of pollinium tracking studies addressing geitonogamy. Oecologia 155: 497-508.
48. Kropf M, Sommerkamp E, Bernhardt K-G. 2012. Population dynamics of Barlia metlesicsiana (Orchidaceae) endemic to Tenerife (Canary Islands). Bocconea 24: 271-276.
49. Kumar S, Skjaeveland A, Orr R, et al. 2009. AIR: a batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses. BMC Bioinformatics 10: 357.
50. Lahaye RRY, Savolainen V, Duthoit S, Maurin O, van der Bank M. 2008. A test of psbK-psbI and atpF-atpH as potential plant DNA barcodes using the flora of the Kruger National Park (South Africa) as a model system. Available from Nature Precedings. http://hdl. handle. net/10101/npre. 2008. 1896. 1.
51. LaJeunesse TC, Pinzón JH. 2007. Screening intragenomic rDNA for dominant variants can provide a consistent retrieval of evolutionary persistent ITS (rDNA) sequences. Molecular Phylogenetics and Evolution 45: 417-422.
52. Löve A. 1976. IOPB chromosome number reports LIII. Taxon 25: 483-500.
53. Meusel H, Jäger E, Weinert E. 1965. Vergleichende Chorologie der Zentraleuropäischen Flora-Karten. Jena: Gustav Fischer Verlag.
54. Molnár V. A, Kreutz CAJ, Ovári M, et al. 2012. Himantoglossum jankae (Orchidaceae: Orchideae), a new name for a long-misnamed lizard orchid. Phytotaxa 73: 8-12.
55. Montieri S, Gaudio L, Aceto S. 2004. Isolation of the LFY/FLO homologue in Orchis italica and evolutionary analysis in some European orchids. Gene 333: 101-109.
56. Nelson E. 1968. Monographie und Ikongraphie der Orchidaceen-Gattungen Serapias, Aceras, Loroglossum, Barlia. Chernex-Montreux: published by the author.
57. Neubig KM, Whitten WM, Carlsward BS, et al. 2009. Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK. Plant Systematics and Evolution 277: 75-84.
58. Nieto-Feliner G, Rosselló JA. 2007. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Molecular Phylogenetics and Evolution 44: 911-919.
59. Nylander JAA. 2004. MrModeltest 2. 3. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University.
60. Nylander JAA, Olsson U, AlströmP, Sanmartín I. 2008. Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersalvicariance analysis of the thrushes (Aves: Turdus). Systematic Biology 57: 257-268.
61. Oxelman B, LidénM, Berglund D. 1997. Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution 206: 393-410.