-
2
-
-
0345149784
-
Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes
-
Bailey C.D., Carr T.G., Harris S.A., and Hughes C.E. Characterization of angiosperm nrDNA polymorphism, paralogy, and pseudogenes. Mol. Phylogenet. Evol. 29 (2003) 435-455
-
(2003)
Mol. Phylogenet. Evol.
, vol.29
, pp. 435-455
-
-
Bailey, C.D.1
Carr, T.G.2
Harris, S.A.3
Hughes, C.E.4
-
3
-
-
0000270001
-
The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny
-
Baldwin B.G., Sanderson M.J., Porter J.M., Wojciechowski M.F., Campbell C.S., and Donoghue M.J. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Mo. Bot. Gard. 82 (1995) 247-277
-
(1995)
Ann. Mo. Bot. Gard.
, vol.82
, pp. 247-277
-
-
Baldwin, B.G.1
Sanderson, M.J.2
Porter, J.M.3
Wojciechowski, M.F.4
Campbell, C.S.5
Donoghue, M.J.6
-
4
-
-
34247572872
-
Three party symbiosis: acoelomorph worms, corals and unicellular algal symbionts in Eilat (Red Sea)
-
Barneah O., Brickner I., Hooge M., Weis V.M., LaJeunesse T.C., and Benayahu Y. Three party symbiosis: acoelomorph worms, corals and unicellular algal symbionts in Eilat (Red Sea). Mar. Biol. 151 (2007) 1215-1223
-
(2007)
Mar. Biol.
, vol.151
, pp. 1215-1223
-
-
Barneah, O.1
Brickner, I.2
Hooge, M.3
Weis, V.M.4
LaJeunesse, T.C.5
Benayahu, Y.6
-
5
-
-
0031035491
-
The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications
-
Buckler S.E., Ippolito A., and Holtsford T.P. The evolution of ribosomal DNA: divergent paralogues and phylogenetic implications. Genetics 145 (1997) 821-832
-
(1997)
Genetics
, vol.145
, pp. 821-832
-
-
Buckler, S.E.1
Ippolito, A.2
Holtsford, T.P.3
-
6
-
-
12244298491
-
Secondary structure and phylogenetic utility of the ribosomal internal transcribed spacer 2 (ITS 2) in scleractinian corals
-
Chen A.C., Chang C., Wei N.V., Chen C., Lein Y., Dai C., and Wallace C.C. Secondary structure and phylogenetic utility of the ribosomal internal transcribed spacer 2 (ITS 2) in scleractinian corals. Zool. Stud. 43 (2004) 759-771
-
(2004)
Zool. Stud.
, vol.43
, pp. 759-771
-
-
Chen, A.C.1
Chang, C.2
Wei, N.V.3
Chen, C.4
Lein, Y.5
Dai, C.6
Wallace, C.C.7
-
7
-
-
0030820048
-
Ribosomal DNA ITS-1 and ITS-2 sequence comparisons as a tool for predicting genetic relatedness
-
Coleman A.W., and Mai J.C. Ribosomal DNA ITS-1 and ITS-2 sequence comparisons as a tool for predicting genetic relatedness. J. Mol. Evol. 45 (1997) 168-177
-
(1997)
J. Mol. Evol.
, vol.45
, pp. 168-177
-
-
Coleman, A.W.1
Mai, J.C.2
-
8
-
-
0034830685
-
Molecular genetic evidence for probable reticulate speciation in the coral genus Madracis from a Caribbean fringing reef slope
-
Diekmann O.E., Bak R.P.M., Stam W.T., and Olsen J.L. Molecular genetic evidence for probable reticulate speciation in the coral genus Madracis from a Caribbean fringing reef slope. Mar. Biol. 139 (2001) 221-233
-
(2001)
Mar. Biol.
, vol.139
, pp. 221-233
-
-
Diekmann, O.E.1
Bak, R.P.M.2
Stam, W.T.3
Olsen, J.L.4
-
9
-
-
0020478245
-
Molecular drive: a cohesive mode of species evolution
-
Dover G.A. Molecular drive: a cohesive mode of species evolution. Nature 299 (1982) 111-117
-
(1982)
Nature
, vol.299
, pp. 111-117
-
-
Dover, G.A.1
-
10
-
-
0029360612
-
Concerted evolution of repetitive DNA sequences in eukaryotes
-
Elder J.F., and Turner B.J. Concerted evolution of repetitive DNA sequences in eukaryotes. Q. Rev. Biol. 70 (1995) 297-320
-
(1995)
Q. Rev. Biol.
, vol.70
, pp. 297-320
-
-
Elder, J.F.1
Turner, B.J.2
-
11
-
-
0033967817
-
Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies
-
Harris D.J., and Crandall K.A. Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies. Mol. Biol. Evol. 17 (2000) 284-291
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 284-291
-
-
Harris, D.J.1
Crandall, K.A.2
-
12
-
-
0026063996
-
Evidence for biased gene conversion in concerted evolution of ribosomal DNA
-
Hillis D.M., Moritz C., Porter C.A., and Baker R.J. Evidence for biased gene conversion in concerted evolution of ribosomal DNA. Science 251 (1991) 308-310
-
(1991)
Science
, vol.251
, pp. 308-310
-
-
Hillis, D.M.1
Moritz, C.2
Porter, C.A.3
Baker, R.J.4
-
13
-
-
33846909074
-
Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta)
-
Hunter R.L., LaJeunesse T.C., and Santos S.R. Structure and evolution of the rDNA internal transcribed spacer (ITS) region 2 in the symbiotic dinoflagellates (Symbiodinium, Dinophyta). J. Phycol. 43 (2007) 120-128
-
(2007)
J. Phycol.
, vol.43
, pp. 120-128
-
-
Hunter, R.L.1
LaJeunesse, T.C.2
Santos, S.R.3
-
14
-
-
14844334248
-
Denaturing gradient gel electrophoresis and its use in the detection of major histocompatibility complex polymorphism
-
Knapp L.A. Denaturing gradient gel electrophoresis and its use in the detection of major histocompatibility complex polymorphism. Tissue Antigens 65 (2005) 211-219
-
(2005)
Tissue Antigens
, vol.65
, pp. 211-219
-
-
Knapp, L.A.1
-
15
-
-
0036944045
-
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs
-
LaJeunesse T.C. Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefs. Mar. Biol. 141 (2002) 387-400
-
(2002)
Mar. Biol.
, vol.141
, pp. 387-400
-
-
LaJeunesse, T.C.1
-
16
-
-
0033752956
-
The biogeography of two species of Symbiodinium (Freudenthal) inhabiting the intertidal anemone, Anthopleura elegantissima (Brandt)
-
LaJeunesse T.C., and Trench R.K. The biogeography of two species of Symbiodinium (Freudenthal) inhabiting the intertidal anemone, Anthopleura elegantissima (Brandt). Biol. Bull. 199 (2000) 126-134
-
(2000)
Biol. Bull.
, vol.199
, pp. 126-134
-
-
LaJeunesse, T.C.1
Trench, R.K.2
-
17
-
-
0141540390
-
Low symbiont diversity in southern Great Barrier Reef corals relative to those of the Caribbean
-
LaJeunesse T.C., Loh W.K.W., van Woesik R., Hoegh-Guldberg O., Schmidt G.W., and Fitt W.K. Low symbiont diversity in southern Great Barrier Reef corals relative to those of the Caribbean. Limnol. Oceanogr. 48 (2003) 2046-2054
-
(2003)
Limnol. Oceanogr.
, vol.48
, pp. 2046-2054
-
-
LaJeunesse, T.C.1
Loh, W.K.W.2
van Woesik, R.3
Hoegh-Guldberg, O.4
Schmidt, G.W.5
Fitt, W.K.6
-
18
-
-
12344304652
-
Closely-related Symbiodinium spp. differ in relative dominance within coral reef host communities across environmental, latitudinal, and biogeographic gradients
-
LaJeunesse T.C., Bhagooli R., Hidaka M., deVantier L., Done T., Schmidt G.W., Fitt W.K., and Hoegh-Guldberg O. Closely-related Symbiodinium spp. differ in relative dominance within coral reef host communities across environmental, latitudinal, and biogeographic gradients. Mar. Ecol. Prog. Ser. 284 (2004) 147-161
-
(2004)
Mar. Ecol. Prog. Ser.
, vol.284
, pp. 147-161
-
-
LaJeunesse, T.C.1
Bhagooli, R.2
Hidaka, M.3
deVantier, L.4
Done, T.5
Schmidt, G.W.6
Fitt, W.K.7
Hoegh-Guldberg, O.8
-
19
-
-
1642564406
-
Morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence distinctions between two species Playtygyra (Cnidaria: Scleractinia) from Hong Kong
-
Lam K., and Morton B. Morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence distinctions between two species Playtygyra (Cnidaria: Scleractinia) from Hong Kong. Mar. Biotechnol. 6 (2003) 555-567
-
(2003)
Mar. Biotechnol.
, vol.6
, pp. 555-567
-
-
Lam, K.1
Morton, B.2
-
20
-
-
33947639604
-
Recognizing dinoflagellates species using ITS rDNA sequences
-
Litaker R.W., Vandersea M.W., Kibler S.R., et al. Recognizing dinoflagellates species using ITS rDNA sequences. J. Phycol. 43 (2007) 344-355
-
(2007)
J. Phycol.
, vol.43
, pp. 344-355
-
-
Litaker, R.W.1
Vandersea, M.W.2
Kibler, S.R.3
-
21
-
-
0037744566
-
Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora
-
Marquez L.M., Miller D.J., Mackenzie J.B., and van Oppen M.J.H. Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Mol. Biol. Evol. 20 (2003) 1077-1086
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1077-1086
-
-
Marquez, L.M.1
Miller, D.J.2
Mackenzie, J.B.3
van Oppen, M.J.H.4
-
22
-
-
0031959006
-
Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
-
Muyzer G., and Smalla K. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek 73 (1998) 127-141
-
(1998)
Antonie van Leeuwenhoek
, vol.73
, pp. 127-141
-
-
Muyzer, G.1
Smalla, K.2
-
23
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., De Waal E., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59 (1993) 695-700
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.2
Uitterlinden, A.G.3
-
24
-
-
0009520474
-
Variation in the Ribosomal Internal Transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): patterns of variation consistent with reticulate evolution
-
Odorico D.M., and Miller D.J. Variation in the Ribosomal Internal Transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): patterns of variation consistent with reticulate evolution. Mol. Biol. Evol. 14 (1997) 465-473
-
(1997)
Mol. Biol. Evol.
, vol.14
, pp. 465-473
-
-
Odorico, D.M.1
Miller, D.J.2
-
25
-
-
3242795199
-
Within- and between-individual sequence variation among ITS 1 copies in the meadow grasshopper Chorthippus parallelus indicates frequent intrachromosomal gene conversion
-
Parkin E.J., and Butlin R.K. Within- and between-individual sequence variation among ITS 1 copies in the meadow grasshopper Chorthippus parallelus indicates frequent intrachromosomal gene conversion. Mol. Biol. Evol. 21 (2004) 1595-1601
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1595-1601
-
-
Parkin, E.J.1
Butlin, R.K.2
-
26
-
-
0037310350
-
The correlation between rDNA copy number and genome size in eukaryotes
-
Prokopowich C.D., Gregory T.R., and Crease T.J. The correlation between rDNA copy number and genome size in eukaryotes. Genome 46 (2003) 48-50
-
(2003)
Genome
, vol.46
, pp. 48-50
-
-
Prokopowich, C.D.1
Gregory, T.R.2
Crease, T.J.3
-
27
-
-
34548533977
-
-
Sampayo, E. M., Franceschinis, L., Hoegh-Guldberg, O., Dove, S., 2007. Niche partitioning of closely related symbiotic dinoflagellates. Mol. Ecol. in press.
-
-
-
-
28
-
-
0035163597
-
Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences
-
Speksnijder A.G., Kowalchuk G.A., De Jong S., Kline E., Stephen J.R., and Laanbroek H.J. Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences. Appl. Environ. Microbiol. 67 (2001) 469-472
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 469-472
-
-
Speksnijder, A.G.1
Kowalchuk, G.A.2
De Jong, S.3
Kline, E.4
Stephen, J.R.5
Laanbroek, H.J.6
-
29
-
-
34548488076
-
-
*and other methods), Version 4.0b10, Sinauer, Sunderland, Mass.
-
-
-
-
30
-
-
34548480307
-
-
Thornhill, D.J., LaJeunesse, T.C. Santos, S.R. (in press). Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimates. Mol. Ecol.
-
-
-
-
31
-
-
0033824430
-
Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses
-
van Oppen M.J.H., Willis B.L., Vugt H.W.J., and Miller D.J. Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Mol. Ecol. 9 (2000) 1363-1373
-
(2000)
Mol. Ecol.
, vol.9
, pp. 1363-1373
-
-
van Oppen, M.J.H.1
Willis, B.L.2
Vugt, H.W.J.3
Miller, D.J.4
-
32
-
-
0034941931
-
The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence?
-
van Oppen M.J.H., McDonald B.J., Willis B., and Miller D.J. The evolutionary history of the coral genus Acropora (Scleractinia, Cnidaria) based on a mitochondrial and a nuclear marker: reticulation, incomplete lineage sorting, or morphological convergence?. Mol. Biol. Evol. 18 (2001) 1315-1329
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 1315-1329
-
-
van Oppen, M.J.H.1
McDonald, B.J.2
Willis, B.3
Miller, D.J.4
-
33
-
-
34548483749
-
-
Staffort-Smith M. (Ed), Australian Institute of Marine Science, Townsville, Australia
-
Veron J.E.N. In: Staffort-Smith M. (Ed). Corals of the World vols. 1-3 (2000), Australian Institute of Marine Science, Townsville, Australia
-
(2000)
Corals of the World
, vol.1-3
-
-
Veron, J.E.N.1
-
34
-
-
4344645239
-
Testing the utility of internally transcribed spacer sequences in coral phylogenetics
-
Vollmer S.V., and Palumbi S.R. Testing the utility of internally transcribed spacer sequences in coral phylogenetics. Mol. Ecol. 13 (2004) 2763-2772
-
(2004)
Mol. Ecol.
, vol.13
, pp. 2763-2772
-
-
Vollmer, S.V.1
Palumbi, S.R.2
-
35
-
-
33749653470
-
Analysis of the ribosomal internal transcribed spacers (ITS) and the 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (scleractinia; Acroporidae)
-
Wei N., Wallace C.C., Dai C., Moothien Pillay K.R., and Chen C.A. Analysis of the ribosomal internal transcribed spacers (ITS) and the 5.8S gene indicate that extremely high rDNA heterogeneity is a unique feature in the scleractinian coral genus Acropora (scleractinia; Acroporidae). Zool. Stud. 45 (2006) 404-418
-
(2006)
Zool. Stud.
, vol.45
, pp. 404-418
-
-
Wei, N.1
Wallace, C.C.2
Dai, C.3
Moothien Pillay, K.R.4
Chen, C.A.5
-
36
-
-
1842360244
-
Experimental hybridization and breeding incompatibilities within the mating systems of mass spawning reef corals
-
Willis B.L., Babcock R.C., Harrison P.L., and Wallace C.C. Experimental hybridization and breeding incompatibilities within the mating systems of mass spawning reef corals. Coral Reefs 16 Suppl. (1997) 553-565
-
(1997)
Coral Reefs
, vol.16
, Issue.SUPPL
, pp. 553-565
-
-
Willis, B.L.1
Babcock, R.C.2
Harrison, P.L.3
Wallace, C.C.4
-
37
-
-
7444222362
-
Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies
-
Worheide G., Nichols S.A., and Goldberg J. Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies. Mol. Phyl. Evol. 33 (2004) 816-830
-
(2004)
Mol. Phyl. Evol.
, vol.33
, pp. 816-830
-
-
Worheide, G.1
Nichols, S.A.2
Goldberg, J.3
|