Character displacement and the evolution of niche complementarity in a model biofilm community

Evolution

Volumn 69, Issue 2, 2015, Pages 283-293

  Ellis, Crystal N ^a,b   Traverse, Charles C ^a   Mayo Smith, Leslie ^a,b   Buskirk, Sean W ^a   Cooper, Vaughn S ^a  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

^b MASSACHUSETTS GENERAL HOSPITAL   (United States)

Author keywords

Diversity; Experimental evolution; Productivity; Resource limitation

Indexed keywords

BACTERIUM; BIOFILM; CHARACTER DISPLACEMENT; COEXISTENCE; COMPLEMENTARITY; DIVERSITY INDEX; ECOTYPE; EVOLUTIONARY THEORY; EXPERIMENTAL STUDY; GENOTYPE; LIMITING FACTOR; NICHE PARTITIONING; PHENOTYPE; RESOURCE AVAILABILITY;

BURKHOLDERIA CENOCEPACIA;

ADAPTATION; BIOFILM; BURKHOLDERIA CENOCEPACIA; ECOTYPE; EVOLUTION; GENETIC VARIABILITY; MUTATION; PHYSIOLOGY; THEORETICAL MODEL;

ADAPTATION, PHYSIOLOGICAL; BIOFILMS; BIOLOGICAL EVOLUTION; BURKHOLDERIA CENOCEPACIA; ECOTYPE; GENETIC VARIATION; MODELS, THEORETICAL; MUTATION;

EID: 84922485771     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/evo.12581     Document Type: Article

References (51)

1. Ashton, I. W., A. E. Miller, W. D. Bowman, and K. N. Suding. 2010. Niche complementarity due to plasticity in resource use: plant partitioning of chemical N forms. Ecology 91:3252-3260.
2. Brockhurst, M. A., M. E. Hochberg, T. Bell, and A. Buckling. 2006. Character displacement promotes cooperation in bacterial biofilms. Curr. Biol. 16:2030-2034.
3. Brown, W. L. Jr., and E. O. Wilson. 1956. Character displacement. Syst. Biol. 5:49-64.
4. Bruno, J. F., J. J. Stachowicz, and M. D. Bertness. 2003. Inclusion of facilitation into ecological theory. Trends Ecol. Evol. 18:119-125.
5. Callahan, B. J., T. Fukami, and D. S. Fisher. 2014. Rapid evolution of adaptive niche construction in experimental microbial populations. Evolution 68:3307-3316.
6. Cardinale, B. J., M. A. Palmer, C. M. Swan, S. Brooks, and N. L. Poff. 2002. The influence of substrate heterogeneity on biofilm metabolism in a stream ecoystem. Ecology 83:412-422.
7. Cohan, F. M. 2001. Bacterial species and speciation. Syst. Biol. 50:513-524.
8. Cooper, V. S., R. K. Staples, C. C. Traverse, and C. N. Ellis. 2014. Parallel evolution of small colony variants in Burkholderia cenocepacia biofilms. Genomics. 104:447-452.
9. Cunha, M. V., S. A. Sousa, J. H. Leitao, L. M. Moreira, P. A. Videira, and I. Sa-Correia. 2004. Studies on the involvement of the exopolysaccharide produced by cystic fibrosis-associated isolates of the Burkholderia cepacia complex in biofilm formation and in persistence of respiratory infections. J. Clin. Microbiol. 42:3052-3058.
10. Day, T., and K. A. Young. 2004. Competitive and facilitative evolutionary diversification. BioScience 54:101-109.
11. Dayan, T., D. Simberloff, E. Tchernov, and Y. Yom-Tov. 1989. Inter- and intraspecific character displacement in mustelids. Ecology 70:1526-1539.
12. Deng, Y., N. Schmid, C. Wang, J. Wang, G. Pessi, D. Wu, J. Lee, C. Aguilar, C. H. Ahrens, C. Chang, et al. 2012. Cis-2-dodecenoic acid receptor RpfR links quorum-sensing signal perception with regulation of virulence through cyclic dimeric guanosine monophosphate turnover. Proc. Natl. Acad. Sci. 109:15479-15484.
13. Futuyma, D., and M. Slatkin. 1983. Coevolution. Sinauer, Sunderland, MA.
14. Grant, P. R., and B. R. Grant. 2006. Evolution of character displacement in Darwin's finches. Science 313:224-226.
15. Haussler, S., C. Lehmann, C. Breselge, M. Rohde, M. Classen, B. Tummler, P. Vandamme, and I. Steinmetz. 2003a. Fatal outcome of lung transplantation in cystic fibrosis patients due to small-colony variants of the Burkholderia cepacia complex. Eur. J. Clin. Microbiol. Infect. Dis. 22:249-253.
16. Haussler, S., I. Ziegler, A. Lottel, F. von Gotz, M. Rohde, D. Wehmhohner, S. Saravanamuthu, B. Tummler, and I. Steinmetz. 2003b. Highly adherent small-colony variants of Pseudomonas aeruginosa in cystic fibrosis lung infection. J. Med. Microbiol. 52:295-301.
17. Heydorn, A., A. T. Nielsen, M. Hentzer, C. Sternberg, M. Givskov, B. K. Ersboll, and S. Molin. 2000. Quantification of biofilm structures by the novel computer program COMSTAT. Microbiology 146 (Pt 10):2395-2407.
18. Isbell, F. I., H. W. Polley, and B. J. Wilsey. 2009. Biodiversity, productivity and the temporal stability of productivity: patterns and processes. Ecol. Lett. 12:443-451.
19. Johnson, C. R., T. E. Lewis, D. S. Nichols, and B. M. Degnan. 1996. Bacterial induction of settlement and metamorphosis in marine invertebrates. Pp. 1219-1224 in Proceedings of the 8th International Coral Reef Symposium, Panama.
20. Kassen, R., M. Llewellyn, and P. B. Rainey. 2004. Ecological constraints on diversification in a model adaptive radiation. Nature 431:984-988.
21. Kylafis, G., and M. Loreau. 2008. Ecological and evolutionary consequences of niche construction for its agent. Ecol. Lett. 11:1072-1081.
22. Li, H., and R. Durbin. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
23. Loreau, M., and A. Hector. 2001. Partitioning selection and complementarity in biodiversity experiments. Nature 412:72-76.
24. McDonald, M. J., S. M. Gehrig, P. L. Meintjes, X.-X. Zhang, and P. B. Rainey. 2009. Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation. Genetics 183:1041-1053.
25. Muchhala, N., and M. D. Potts. 2007. Character displacement among bat-pollinated flowers of the genus Burmeistera: analysis of mechanism, process and pattern. Proc. Biol. Sci. 274:2731-2737.
26. Nadell, C. D., and B. L. Bassler. 2011. A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms. Proc. Natl. Acad. Sci. USA 108:14181-14185.
27. Neill, W. E. 1975. Experimental studies of microcrustacean competition, community composition and efficiency of resource utilization. Ecology 56:809-826.
28. O'Connor, J. R., N. J. Kuwada, V. Huangyutitham, P. A. Wiggins, and C. S. Harwood. 2012. Surface sensing and lateral subcellular localization of WspA, the receptor in a chemosensory-like system leading to c-di-GMP production. Mol. Microbiol. 86:720-729.
29. O'Toole, G. A. 2011. Microtiter dish biofilm formation assay. J. Vis. Exp. 47:2437.
30. Poltak, S. R., and V. S. Cooper. 2011. Ecological succession in long-term experimentally evolved biofilms produces synergistic communities. ISME J. 5:369-378.
31. Pugnaire, F. I., P. Haase, and J. Puigdefabregas. 1996. Facilitation between higher plant species in a semiarid environment. Ecology 77:1420-1426.
32. Rainey, P. B., and M. Travisano. 1998. Adaptive radiation in a heterogeneous environment. Nature 394:69-72.
33. Rainey, P. B., A. Buckling, R. Kassen, and M. Travisano. 2000. The emergence and maintenance of diversity: insights from experimental bacterial populations. Trends Ecol. Evol. 15:243-247.
34. Rajaneimi, T. K. 2003. Explaining productivity-diversity relationships in plants. Oikos 101:449-457.
35. Romling, U., M. Gomelsky, and M. Y. Galperin. 2005. C-di-GMP: the dawning of a novel bacterial signalling system. Mol. Microbiol. 57:629-639.
36. Saxer, G., M. Doebeli, and M. Travisano. 2009. Spatial structure leads to ecological breakdown and loss of diversity. Proc. Biol. Sci. 276:2065-2070.
37. Schluter, D. 2000. Ecological character displacement in adaptive radiation. Am. Nat. 156:S4-S16.
38. Schluter, D., and J. D. McPhail. 1992. Ecological character displacement and speciation in sticklebacks. Am. Nat. 140:85-108.
39. Schluter, D., T. D. Price, and P. R. Grant. 1985. Ecological character displacement in darwin's finches. Science 227:1056-1059.
40. Sommerfeldt, N., A. Possling, G. Becker, C. Pesavento, N. Tschowri, and R. Hengge. 2009. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Microbiology 155:1318-1331.
41. Spurbeck, R. R., R. J. Tarrien, and H. L. Mobley. 2012. Enzymatically active and inactive phosphodiesterases and diguanylate cyclases are involved in regulation of motility or sessility in Escherichia coli CFT073. MBio 3:e00307-e00312
42. Stachowicz, J. J. 2001. Mutualism, facilitation, and the structure of ecological communities. BioScience 51:235-246.
43. Starkey, M., J. H. Hickman, L. Ma, N. Zhang, S. De Long, A. Hinz, S. Palacios, C. Manoil, M. J. Kirisits, T. D. Starner, et al. 2009. Pseudomonas aeruginosa rugose small colony variants have adaptations likely to promote persistence in the cystic fibrosis lung. J. Bacteriol. 191:3492-3503.
44. Stuart, Y. E., and J. B. Losos. 2013. Ecological character displacement: glass half full or half empty? Trends Ecol. Evol. 28:402-408.
45. Tamayo, R., J. T. Pratt, and A. Camilli. 2007. Roles of cyclic diguanylate in the regulation of bacterial pathogenesis. Annu. Rev. Microbiol. 61:131-148.
46. Tilman, D., R. M. May, C. L. Lehman, and M. A. Nowak. 1994. Habitat destruction and the extinction debt. Nature 371:65-66.
47. Traverse, C. C., L. M. Mayo-Smith, S. R. Poltak, and V. S. Cooper. 2013. Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections. Proc. Natl. Acad. Sci. 110:E250-E259.
48. Turner, P. E., V. Souza, and R. E. Lenski. 1996. Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes. Ecology 77:2119-2129.
49. Whittaker, R. H. 1977. Evolution of species diversity in land communities. Pp. 1-67 in M. K. Hect, W. C. Steere, and B. Wallace, eds. Evolutionary biology. Plenum Press, New York.
50. Zhang, Z. 2003. Mutualism or cooperation among competitors promotes coexistence and competitive ability. Ecol. Modell. 164:271-282.
51. Zlosnik, J. E., P. S. Costa, R. Brant, P. Y. Mori, T. J. Hird, M. C. Fraenkel, P. G. Wilcox, A. G. Davidson, and D. P. Speert. 2011. Mucoid and nonmucoid Burkholderia cepacia complex bacteria in cystic fibrosis infections. Am. J. Respir. Crit. Care. Med. 183:67-72.