메뉴 건너뛰기




Volumn 110, Issue 3, 2013, Pages

Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infections

Author keywords

Clonal interference; Ecotype; Microbial ecology; Population genomics

Indexed keywords

EXOPOLYSACCHARIDE; TRICARBOXYLIC ACID;

EID: 84872541144     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1207025110     Document Type: Article
Times cited : (151)

References (53)
  • 1
    • 39149100341 scopus 로고    scopus 로고
    • Physiological heterogeneity in biofilms
    • DOI 10.1038/nrmicro1838, PII NRMICRO1838
    • Stewart PS, Franklin MJ (2008) Physiological heterogeneity in biofilms. Nat Rev Microbiol 6(3):199-210. (Pubitemid 351256315)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.3 , pp. 199-210
    • Stewart, P.S.1    Franklin, M.J.2
  • 2
    • 1842612577 scopus 로고    scopus 로고
    • Bacterial biofilms: From the natural environment to infectious diseases
    • DOI 10.1038/nrmicro821
    • Hall-Stoodley L, Costerton JW, Stoodley P (2004) Bacterial biofilms: From the natural environment to infectious diseases. Nat Rev Microbiol 2(2):95-108. (Pubitemid 39490064)
    • (2004) Nature Reviews Microbiology , vol.2 , Issue.2 , pp. 95-108
    • Hall-Stoodley, L.1    Costerton, J.W.2    Stoodley, P.3
  • 4
    • 79951810051 scopus 로고    scopus 로고
    • Ecological succession in long-term experimentally evolved biofilms produces synergistic communities
    • Poltak SR, Cooper VS (2011) Ecological succession in long-term experimentally evolved biofilms produces synergistic communities. ISME J 5(3):369-378.
    • (2011) ISME J , vol.5 , Issue.3 , pp. 369-378
    • Poltak, S.R.1    Cooper, V.S.2
  • 5
    • 3142721877 scopus 로고    scopus 로고
    • Studies on the involvement of the exopolysaccharide produced by cystic fibrosis-associated isolates of the Burkholderia cepacia complex in biofilm formation and in persistence of respiratory infections
    • DOI 10.1128/JCM.42.7.3052-3058.2004
    • Cunha MV, et al. (2004) Studies on the involvement of the exopolysaccharide produced by cystic fibrosis-associated isolates of the Burkholderia cepacia complex in biofilm formation and in persistence of respiratory infections. J Clin Microbiol 42(7):3052-3058. (Pubitemid 38938057)
    • (2004) Journal of Clinical Microbiology , vol.42 , Issue.7 , pp. 3052-3058
    • Cunha, M.V.1    Sousa, S.A.2    Leitao, J.H.3    Moreira, L.M.4    Videira, P.A.5    Sa-Correia, I.6
  • 9
    • 43249122695 scopus 로고    scopus 로고
    • Clinical characteristics associated with isolation of small-colony variants of Staphylococcus aureus and Pseudomonas aeruginosa from respiratory secretions of patients with cystic fibrosis
    • DOI 10.1128/JCM.00361-08
    • Schneider M, et al. (2008) Clinical characteristics associated with isolation of smallcolony variants of Staphylococcus aureus and Pseudomonas aeruginosa from respiratory secretions of patients with cystic fibrosis. J Clin Microbiol 46(5):1832-1834. (Pubitemid 351657236)
    • (2008) Journal of Clinical Microbiology , vol.46 , Issue.5 , pp. 1832-1834
    • Schneider, M.1    Muhlemann, K.2    Droz, S.3    Couzinet, S.4    Casaulta, C.5    Zimmerli, S.6
  • 10
    • 82255186689 scopus 로고    scopus 로고
    • Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
    • Lieberman TD, et al. (2011) Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat Genet 43(12):1275-1280.
    • (2011) Nat Genet , vol.43 , Issue.12 , pp. 1275-1280
    • Lieberman, T.D.1
  • 11
    • 79959841531 scopus 로고    scopus 로고
    • Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs
    • Cramer N, et al. (2011) Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungs. Environ Microbiol 13(7):1690-1704.
    • (2011) Environ Microbiol , vol.13 , Issue.7 , pp. 1690-1704
    • Cramer, N.1
  • 13
    • 78751522378 scopus 로고    scopus 로고
    • Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo
    • Huse HK, et al. (2010) Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo. MBio 1(4):e00199-10.
    • (2010) MBio , vol.1 , Issue.4
    • Huse, H.K.1
  • 14
    • 8544278913 scopus 로고    scopus 로고
    • Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe
    • DOI 10.1136/thx.2003.019810
    • Coenye T, Spilker T, Van Schoor A, LiPuma JJ, Vandamme P (2004) Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe. Thorax 59(11):952-954. (Pubitemid 39490779)
    • (2004) Thorax , vol.59 , Issue.11 , pp. 952-954
    • Coenye, T.1    Spilker, T.2    Van Schoor, A.3    LiPuma, J.J.4    Vandamme, P.5
  • 15
    • 13444251656 scopus 로고    scopus 로고
    • The multifarious, multireplicon Burkholderia cepacia complex
    • DOI 10.1038/nrmicro1085
    • Mahenthiralingam E, Urban TA, Goldberg JB (2005) The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol 3(2):144-156. (Pubitemid 40207595)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.2 , pp. 144-156
    • Mahenthiralingam, E.1    Urban, T.A.2    Goldberg, J.B.3
  • 16
    • 79959405574 scopus 로고    scopus 로고
    • Burkholderia cenocepacia phenotypic clonal variation during a 3.5-year colonization in the lungs of a cystic fibrosis patient
    • Coutinho CP, de Carvalho CC, Madeira A, Pinto-de-Oliveira A, Sá-Correia I (2011) Burkholderia cenocepacia phenotypic clonal variation during a 3.5-year colonization in the lungs of a cystic fibrosis patient. Infect Immun 79(7):2950-2960.
    • (2011) Infect Immun , vol.79 , Issue.7 , pp. 2950-2960
    • Coutinho, C.P.1    De Carvalho, C.C.2    Madeira, A.3    Pinto-de-Oliveira, A.4    Sá-Correia, I.5
  • 17
    • 84862621176 scopus 로고    scopus 로고
    • Pseudomonas biofilm matrix composition and niche biology
    • Mann EE, Wozniak DJ (2012) Pseudomonas biofilm matrix composition and niche biology. FEMS Microbiol Rev 36(4):893-916.
    • (2012) FEMS Microbiol Rev , vol.36 , Issue.4 , pp. 893-916
    • Mann, E.E.1    Wozniak, D.J.2
  • 19
    • 0035064787 scopus 로고    scopus 로고
    • RNase II levels change according to the growth conditions: Characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II
    • Cairrão F, Chora A, Zilhão R, Carpousis AJ, Arraiano CM (2001) RNase II levels change according to the growth conditions: Characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II. Mol Microbiol 39(6):1550-1561.
    • (2001) Mol Microbiol , vol.39 , Issue.6 , pp. 1550-1561
    • Cairrão, F.1    Chora, A.2    Zilhão, R.3    Carpousis, A.J.4    Arraiano, C.M.5
  • 21
    • 36549080792 scopus 로고    scopus 로고
    • Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces
    • DOI 10.1111/j.1365-2958.2007.06008.x
    • Güvener ZT, Harwood CS (2007) Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces. Mol Microbiol 66(6):1459-1473. (Pubitemid 350179680)
    • (2007) Molecular Microbiology , vol.66 , Issue.6 , pp. 1459-1473
    • Guvener, Z.T.1    Harwood, C.S.2
  • 22
    • 77951593683 scopus 로고    scopus 로고
    • Beneficial mutations and the dynamics of adaptation in asexual populations
    • Sniegowski PD, Gerrish PJ (2010) Beneficial mutations and the dynamics of adaptation in asexual populations. Philos Trans R Soc Lond B Biol Sci 365(1544):1255-1263.
    • (2010) Philos Trans R Soc Lond B Biol Sci , vol.365 , Issue.1544 , pp. 1255-1263
    • Sniegowski, P.D.1    Gerrish, P.J.2
  • 24
    • 0036428671 scopus 로고    scopus 로고
    • Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111
    • DOI 10.1046/j.1365-2958.2002.03182.x
    • Huber B, et al. (2002) Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111. Mol Microbiol 46(2):411-426. (Pubitemid 35340953)
    • (2002) Molecular Microbiology , vol.46 , Issue.2 , pp. 411-426
    • Huber, B.1    Riedel, K.2    Kothe, M.3    Givskov, M.4    Molin, S.5    Eberl, L.6
  • 26
    • 73449121106 scopus 로고    scopus 로고
    • Burkholderia cenocepacia O antigen lipopolysaccharide prevents phagocytosis by macrophages and adhesion to epithelial cells
    • Saldías MS, Ortega X, Valvano MA (2009) Burkholderia cenocepacia O antigen lipopolysaccharide prevents phagocytosis by macrophages and adhesion to epithelial cells. J Med Microbiol 58(Pt 12):1542-1548.
    • (2009) J Med Microbiol , vol.58 , Issue.PART 12 , pp. 1542-1548
    • Saldías, M.S.1    Ortega, X.2    Valvano, M.A.3
  • 27
    • 70350438416 scopus 로고    scopus 로고
    • Differential lipopolysaccharide core capping leads to quantitative and correlated modifications of mechanical and structural properties in Pseudomonas aeruginosa biofilms
    • Lau PC, Lindhout T, Beveridge TJ, Dutcher JR, Lam JS (2009) Differential lipopolysaccharide core capping leads to quantitative and correlated modifications of mechanical and structural properties in Pseudomonas aeruginosa biofilms. J Bacteriol 191(21):6618-6631.
    • (2009) J Bacteriol , vol.191 , Issue.21 , pp. 6618-6631
    • Lau, P.C.1    Lindhout, T.2    Beveridge, T.J.3    Dutcher, J.R.4    Lam, J.S.5
  • 29
    • 49549084325 scopus 로고    scopus 로고
    • Historical and contingent factors affect reevolution of a complex feature lost during mass extinction in communities of digital organisms
    • Yedid G, Ofria CA, Lenski RE (2008) Historical and contingent factors affect reevolution of a complex feature lost during mass extinction in communities of digital organisms. J Evol Biol 21(5):1335-1357.
    • (2008) J Evol Biol , vol.21 , Issue.5 , pp. 1335-1357
    • Yedid, G.1    Ofria, C.A.2    Lenski, R.E.3
  • 31
    • 0032474853 scopus 로고    scopus 로고
    • Adaptive radiation in a heterogeneous environment
    • DOI 10.1038/27900
    • Rainey PB, Travisano M (1998) Adaptive radiation in a heterogeneous environment. Nature 394(6688):69-72. (Pubitemid 28321802)
    • (1998) Nature , vol.394 , Issue.6688 , pp. 69-72
    • Rainey, P.B.1    Travisano, M.2
  • 32
    • 23744479941 scopus 로고    scopus 로고
    • Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilms
    • DOI 10.1128/AEM.71.8.4809-4821.2005
    • Kirisits MJ, Prost L, Starkey M, Parsek MR (2005) Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 71(8):4809-4821. (Pubitemid 41129540)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.8 , pp. 4809-4821
    • Kirisits, M.J.1    Prost, L.2    Starkey, M.3    Parsek, M.R.4
  • 33
    • 0035140062 scopus 로고    scopus 로고
    • Initiation of biofilm formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilities
    • DOI 10.1128/JB.183.4.1195-1204.2001
    • Déziel E, Comeau Y, Villemur R (2001) Initiation of bio film formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilities. J Bacteriol 183(4):1195-1204. (Pubitemid 32107715)
    • (2001) Journal of Bacteriology , vol.183 , Issue.4 , pp. 1195-1204
    • Deziel, E.1    Comeau, Y.2    Villemur, R.3
  • 34
    • 77955844575 scopus 로고    scopus 로고
    • Robustness and evolvability
    • Masel J, Trotter MV (2010) Robustness and evolvability. Trends Genet 26(9):406-414.
    • (2010) Trends Genet , vol.26 , Issue.9 , pp. 406-414
    • Masel, J.1    Trotter, M.V.2
  • 35
    • 57049098631 scopus 로고    scopus 로고
    • The effect of genetic robustness on evolvability in digital organisms
    • Elena SF, Sanjuán R (2008) The effect of genetic robustness on evolvability in digital organisms. BMC Evol Biol 8:284.
    • (2008) BMC Evol Biol , vol.8 , pp. 284
    • Elena, S.F.1    Sanjuán, R.2
  • 37
    • 79954716359 scopus 로고    scopus 로고
    • Mucoid Pseudomonas aeruginosa isolates maintain the biofilm formation capacity and the gene expression profiles during the chronic lung infection of CF patients
    • Lee B, et al. (2011) Mucoid Pseudomonas aeruginosa isolates maintain the biofilm formation capacity and the gene expression profiles during the chronic lung infection of CF patients. APMIS 119(4-5):263-274.
    • (2011) APMIS , vol.119 , Issue.4-5 , pp. 263-274
    • Lee, B.1
  • 38
    • 2642572004 scopus 로고    scopus 로고
    • Biofilm formation by the small colony variant phenotype of Pseudomonas aeruginosa
    • Häussler S (2004) Biofilm formation by the small colony variant phenotype of Pseudomonas aeruginosa. Environ Microbiol 6(6):546-551.
    • (2004) Environ Microbiol , vol.6 , Issue.6 , pp. 546-551
    • Häussler, S.1
  • 40
    • 66149084428 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa rugose small-colony variants have adaptations that likely promote persistence in the cystic fibrosis lung
    • Starkey M, et al. (2009) Pseudomonas aeruginosa rugose small-colony variants have adaptations that likely promote persistence in the cystic fibrosis lung. J Bacteriol 191(11):3492-3503.
    • (2009) J Bacteriol , vol.191 , Issue.11 , pp. 3492-3503
    • Starkey, M.1
  • 41
    • 79961104854 scopus 로고    scopus 로고
    • Direct evaluation of Pseudomonas aeruginosa biofilm mediators in a chronic infection model
    • Byrd MS, et al. (2011) Direct evaluation of Pseudomonas aeruginosa biofilm mediators in a chronic infection model. Infect Immun 79(8):3087-3095.
    • (2011) Infect Immun , vol.79 , Issue.8 , pp. 3087-3095
    • Byrd, M.S.1
  • 42
    • 67650685860 scopus 로고    scopus 로고
    • Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis
    • Hoboth C, et al. (2009) Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis. J Infect Dis 200(1):118-130.
    • (2009) J Infect Dis , vol.200 , Issue.1 , pp. 118-130
    • Hoboth, C.1
  • 43
    • 33646181748 scopus 로고    scopus 로고
    • Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations
    • King T, Seeto S, Ferenci T (2006) Genotype-by-environment interactions influencing the emergence of rpoS mutations in Escherichia coli populations. Genetics 172(4):2071-2079.
    • (2006) Genetics , vol.172 , Issue.4 , pp. 2071-2079
    • King, T.1    Seeto, S.2    Ferenci, T.3
  • 44
    • 78650546051 scopus 로고    scopus 로고
    • RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media
    • Conrad TM, et al. (2010) RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal media. Proc Natl Acad Sci USA 107(47):20500-20505.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.47 , pp. 20500-20505
    • Conrad, T.M.1
  • 45
    • 34548769341 scopus 로고    scopus 로고
    • Evolution of global regulatory networks during a long-term experiment with Escherichia coli
    • DOI 10.1002/bies.20629
    • Philippe N, Crozat E, Lenski RE, Schneider D (2007) Evolution of global regulatory networks during a long-term experiment with Escherichia coli. Bioessays 29(9):846-860. (Pubitemid 47424895)
    • (2007) BioEssays , vol.29 , Issue.9 , pp. 846-860
    • Philippe, N.1    Crozat, E.2    Lenski, R.E.3    Schneider, D.4
  • 46
    • 34247263879 scopus 로고    scopus 로고
    • Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity
    • DOI 10.1534/genetics.106.069906
    • Bantinaki E, et al. (2007) Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics 176(1):441-453. (Pubitemid 350021038)
    • (2007) Genetics , vol.176 , Issue.1 , pp. 441-453
    • Bantinaki, E.1    Kassen, R.2    Knight, C.G.3    Robinson, Z.4    Spiers, A.J.5    Rainey, P.B.6
  • 48
    • 79958069364 scopus 로고    scopus 로고
    • The airway microbiome in cystic fibrosis and implications for treatment
    • Zemanick ET, Sagel SD, Harris JK (2011) The airway microbiome in cystic fibrosis and implications for treatment. Curr Opin Pediatr 23(3):319-324.
    • (2011) Curr Opin Pediatr , vol.23 , Issue.3 , pp. 319-324
    • Zemanick, E.T.1    Sagel, S.D.2    Harris, J.K.3
  • 49
    • 77957746208 scopus 로고    scopus 로고
    • Genome-wide mutational diversity in an evolving population of Escherichia coli
    • Barrick JE, Lenski RE (2009) Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harb Symp Quant Biol 74:119-129.
    • (2009) Cold Spring Harb Symp Quant Biol , vol.74 , pp. 119-129
    • Barrick, J.E.1    Lenski, R.E.2
  • 50
    • 77950550467 scopus 로고    scopus 로고
    • Experimental adaptation of Burkholderia cenocepacia to onion medium reduces host range
    • Ellis CN, Cooper VS (2010) Experimental adaptation of Burkholderia cenocepacia to onion medium reduces host range. Appl Environ Microbiol 76(8):2387-2396.
    • (2010) Appl Environ Microbiol , vol.76 , Issue.8 , pp. 2387-2396
    • Ellis, C.N.1    Cooper, V.S.2
  • 51
    • 0037042475 scopus 로고    scopus 로고
    • An epidemic Burkholderia cepacia complex strain identified in soil
    • LiPuma JJ, Spilker T, Coenye T, Gonzalez CF (2002) An epidemic Burkholderia cepacia complex strain identified in soil. Lancet 359:2002-2003.
    • (2002) Lancet , vol.359 , pp. 2002-2003
    • LiPuma, J.J.1    Spilker, T.2    Coenye, T.3    Gonzalez, C.F.4
  • 52
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18(11):1851-1858.
    • (2008) Genome Res , vol.18 , Issue.11 , pp. 1851-1858
    • Li, H.1    Ruan, J.2    Durbin, R.3
  • 53
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25(14):1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.