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Volumn 1279, Issue , 2015, Pages 45-65

Identification of essential genes and synthetic lethal gene combinations in Escherichia coli K-12

Author keywords

ASKA collection; Escherichia coli; Essential genes; FLP recombinase; FRT; Gene deletion; Gene knockout; Homologous recombination; In frame deletion; KEIO collection; Lambda Red recombinase

Indexed keywords

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIUM CULTURE; ESCHERICHIA COLI K 12; GENE DELETION; KNOCKOUT GENE; LETHAL GENE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; AMINO ACID SEQUENCE; BACTERIUM CONJUGATION; ELECTROPORATION; ESSENTIAL GENE; GENE INACTIVATION; GENETIC COMPLEMENTATION; GENETIC TRANSFORMATION; GENETICS; GENOMICS; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PROCEDURES; REPRODUCIBILITY;

EID: 84922428644     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-4939-2398-4_4     Document Type: Article
Times cited : (19)

References (34)
  • 1
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 inframe, single-gene knock-out mutants—the Keio collection
    • Baba T, Ara T, Hasegawa M et al (2006) Construction of Escherichia coli K-12 inframe, single-gene knock-out mutants—the Keio collection. Mol Syst Biol. doi: 10.1038/msb4100050
    • (2006) Mol Syst Biol
    • Baba, T.1    Ara, T.2    Hasegawa, M.3
  • 2
    • 73849087355 scopus 로고    scopus 로고
    • Update on the Keio collection of Escherichia coli single-gene deletion mutants
    • Yamamoto N, Nakahigashi K, Nakamichi T et al (2009) Update on the Keio collection of Escherichia coli single-gene deletion mutants. Mol Syst Biol 5:335
    • (2009) Mol Syst Biol , vol.5 , pp. 335
    • Yamamoto, N.1    Nakahigashi, K.2    Nakamichi, T.3
  • 3
    • 0037173615 scopus 로고    scopus 로고
    • Functional profiling of the Saccharomyces cerevisiae genome
    • Giaever G, Chu AM, Ni L et al (2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418:387–391
    • (2002) Nature , vol.418 , pp. 387-391
    • Giaever, G.1    Chu, A.M.2    Ni, L.3
  • 5
    • 10744229659 scopus 로고    scopus 로고
    • Comprehensive transposon mutant library of Pseudomonas aeruginosa
    • Jacobs MA, Alwood A, Thaipisuttikul I et al (2003) Comprehensive transposon mutant library of Pseudomonas aeruginosa. Proc Natl Acad Sci U S A 100:14339–14344
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 14339-14344
    • Jacobs, M.A.1    Alwood, A.2    Thaipisuttikul, I.3
  • 6
    • 0034129918 scopus 로고    scopus 로고
    • Functional genomics of Escherichia coli in Japan
    • Mori H, Isono K, Horiuchi T et al (2000) Functional genomics of Escherichia coli in Japan. Res Microbiol 151:121–128
    • (2000) Res Microbiol , vol.151 , pp. 121-128
    • Mori, H.1    Isono, K.2    Horiuchi, T.3
  • 7
    • 0023669069 scopus 로고
    • The physical map of the whole E. Coli chromosome: Application of a new strategy for rapid analysis and sorting of a large genomic library
    • Kohara Y, Akiyama K, Isono K (1987) The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library. Cell 50:495–508
    • (1987) Cell , vol.50 , pp. 495-508
    • Kohara, Y.1    Akiyama, K.2    Isono, K.3
  • 8
    • 40549138065 scopus 로고    scopus 로고
    • A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12
    • Miki T, Yamamoto Y, Matsuda H (2008) A novel, simple, high-throughput method for isolation of genome-wide transposon insertion mutants of Escherichia coli K-12. Methods Mol Biol 416:195–204
    • (2008) Methods Mol Biol , vol.416 , pp. 195-204
    • Miki, T.1    Yamamoto, Y.2    Matsuda, H.3
  • 9
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640–6645
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 10
    • 40549132169 scopus 로고    scopus 로고
    • The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12
    • Baba T, Mori H (2008) The construction of systematic in-frame, single-gene knockout mutant collection in Escherichia coli K-12. Methods Mol Biol 416:171–181
    • (2008) Methods Mol Biol , vol.416 , pp. 171-181
    • Baba, T.1    Mori, H.2
  • 11
    • 50849098825 scopus 로고    scopus 로고
    • ESGA: E. Coli synthetic genetic array analysis
    • Butland G, Babu M, Diaz-Mejia JJ et al (2008) eSGA: E. coli synthetic genetic array analysis. Nat Methods 5:789–795
    • (2008) Nat Methods , vol.5 , pp. 789-795
    • Butland, G.1    Babu, M.2    Diaz-Mejia, J.J.3
  • 12
    • 50849125711 scopus 로고    scopus 로고
    • High-throughput, quantitative analyses of genetic interactions in
    • Typas A, Nichols RJ, Siegele DA et al (2008) High-throughput, quantitative analyses of genetic interactions in E. coli. Nat Methods 5:781–787
    • (2008) E. Coli. Nat Methods , vol.5 , pp. 781-787
    • Typas, A.1    Nichols, R.J.2    Siegele, D.A.3
  • 13
    • 0141504252 scopus 로고    scopus 로고
    • Experimental determination and system level analysis of essential genes in Escherichia coli MG 1655
    • Gerdes SY, Scholle MD, Campbell JW et al (2003) Experimental determination and system level analysis of essential genes in Escherichia coli MG 1655. J Bacteriol 185:5673–5684
    • (2003) J Bacteriol , vol.185 , pp. 5673-5684
    • Gerdes, S.Y.1    Scholle, M.D.2    Campbell, J.W.3
  • 14
    • 84879413726 scopus 로고    scopus 로고
    • Transposon insertion sequencing: A new tool for systemslevel analysis of microorganisms
    • van Opijnen T, Camilli A (2013) Transposon insertion sequencing: a new tool for systemslevel analysis of microorganisms. Nat Rev Microbiol 11:435–442
    • (2013) Nat Rev Microbiol , vol.11 , pp. 435-442
    • Van Opijnen, T.1    Camilli, A.2
  • 16
    • 84902935748 scopus 로고    scopus 로고
    • Colony-live—a high-throughput method for measuring microbial colony growth kinetics—reveals diverse growth effects of gene knockouts in Escherichia coli
    • Takeuchi R, Tamura T, Nakayashiki T et al (2014) Colony-live—a high-throughput method for measuring microbial colony growth kinetics—reveals diverse growth effects of gene knockouts in Escherichia coli. BMC Microbiol 14:171
    • (2014) BMC Microbiol , vol.14 , pp. 171
    • Takeuchi, R.1    Tamura, T.2    Nakayashiki, T.3
  • 17
    • 84893049358 scopus 로고    scopus 로고
    • Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12
    • Yong HT, Yamamoto N, Takeuchi R et al (2013) Development of a system for discovery of genetic interactions for essential genes in Escherichia coli K-12. Genes Genet Syst 88:233–240
    • (2013) Genes Genet Syst , vol.88 , pp. 233-240
    • Yong, H.T.1    Yamamoto, N.2    Takeuchi, R.3
  • 18
    • 0022502436 scopus 로고
    • Mechanisms of stable plasmid inheritance
    • Hiraga S (1986) Mechanisms of stable plasmid inheritance. Adv Biophys 21:91–103
    • (1986) Adv Biophys , vol.21 , pp. 91-103
    • Hiraga, S.1
  • 19
    • 0021827106 scopus 로고
    • A review of mini-F plasmid maintenance
    • Kline BC (1985) A review of mini-F plasmid maintenance. Plasmid 14:1–16
    • (1985) Plasmid , vol.14 , pp. 1-16
    • Kline, B.C.1
  • 20
    • 0021982673 scopus 로고
    • Mechanisms essential for stable inheritance of mini-F plasmid
    • Hiraga S, Ogura T, Mori H et al (1985) Mechanisms essential for stable inheritance of mini-F plasmid. Basic Life Sci 30:469–487
    • (1985) Basic Life Sci , vol.30 , pp. 469-487
    • Hiraga, S.1    Ogura, T.2    Mori, H.3
  • 21
    • 0016833696 scopus 로고
    • Cloning, isolation, and characterization of replication regions of complex plasmid genomes
    • Timmis K, Cabello F, Cohen SN (1975) Cloning, isolation, and characterization of replication regions of complex plasmid genomes. Proc Natl Acad Sci U S A 72:2242–2246
    • (1975) Proc Natl Acad Sci U S A , vol.72 , pp. 2242-2246
    • Timmis, K.1    Cabello, F.2    Cohen, S.N.3
  • 22
    • 0017135003 scopus 로고
    • Method for the isolation of the replication region of a bacterial replicon: Construction of a mini-F’kn plasmid
    • Lovett MA, Helinski DR (1976) Method for the isolation of the replication region of a bacterial replicon: construction of a mini-F’kn plasmid. J Bacteriol 127:982–987
    • (1976) J Bacteriol , vol.127 , pp. 982-987
    • Lovett, M.A.1    Helinski, D.R.2
  • 23
    • 0019471225 scopus 로고
    • Replication and incompatibility of F and plasmids in the IncFIGroup
    • Lane HE (1981) Replication and incompatibility of F and plasmids in the IncFIGroup. Plasmid 5:100–126
    • (1981) Plasmid , vol.5 , pp. 100-126
    • Lane, H.E.1
  • 24
    • 0023003364 scopus 로고
    • Structure and function of the F plasmid genes essential for partitioning
    • Mori H, Kondo A, Ohshima A et al (1986) Structure and function of the F plasmid genes essential for partitioning. J Mol Biol 192:1–15
    • (1986) J Mol Biol , vol.192 , pp. 1-15
    • Mori, H.1    Kondo, A.2    Ohshima, A.3
  • 25
    • 33646568438 scopus 로고    scopus 로고
    • Complete set of ORF clones of Escherichia coli ASKA library (A complete set of E. Coli K-12 ORF archive): Unique resources for biological research
    • Kitagawa M, Ara T, Arifuzzaman M et al (2005) Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res 12:291–299
    • (2005) DNA Res , vol.12 , pp. 291-299
    • Kitagawa, M.1    Ara, T.2    Arifuzzaman, M.3
  • 26
    • 77955342525 scopus 로고    scopus 로고
    • The Escherichia coli K-12 ORFeome: A resource for comparative molecular microbiology
    • Rajagopala SV, Yamamoto N, Zweifel AE et al (2010) The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology. BMC Genomics 11:470
    • (2010) BMC Genomics , vol.11 , pp. 470
    • Rajagopala, S.V.1    Yamamoto, N.2    Zweifel, A.E.3
  • 27
    • 78650475398 scopus 로고    scopus 로고
    • Phenotypic landscape of a bacterial cell
    • Nichols RJ, Sen S, Choo YJ et al (2011) Phenotypic landscape of a bacterial cell. Cell 144:143–156
    • (2011) Cell , vol.144 , pp. 143-156
    • Nichols, R.J.1    Sen, S.2    Choo, Y.J.3
  • 28
    • 67651229818 scopus 로고    scopus 로고
    • Phenotype profiling of single gene deletion mutants of E. Coli using Biolog technology
    • Tohsato Y, Mori H (2008) Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology. Genome Inform 21:42–52
    • (2008) Genome Inform , vol.21 , pp. 42-52
    • Tohsato, Y.1    Mori, H.2
  • 29
    • 31544438578 scopus 로고    scopus 로고
    • Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W 3110
    • Hayashi K, Morooka N, Yamamoto Y et al (2006) Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W 3110. Mol Syst Biol. doi: 10.1038/msb4100049
    • (2006) Mol Syst Biol
    • Hayashi, K.1    Morooka, N.2    Yamamoto, Y.3
  • 30
    • 31544443526 scopus 로고    scopus 로고
    • Escherichia coli K-12: A cooperatively developed annotation snapshot—2005
    • Riley M, Abe T, Arnaud MB et al (2006) Escherichia coli K-12: a cooperatively developed annotation snapshot—2005. Nucleic Acids Res 34:1–9
    • (2006) Nucleic Acids Res , vol.34 , pp. 1-9
    • Riley, M.1    Abe, T.2    Arnaud, M.B.3
  • 31
    • 4344668509 scopus 로고    scopus 로고
    • Translation arrest of SecM is essential for the basal and regulated expression of SecA
    • Murakami A, Nakatogawa H, Ito K (2004) Translation arrest of SecM is essential for the basal and regulated expression of SecA. Proc Natl Acad Sci U S A 101:12330–12335
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 12330-12335
    • Murakami, A.1    Nakatogawa, H.2    Ito, K.3
  • 32
    • 13844292691 scopus 로고    scopus 로고
    • SecM facilitates translocase function of SecA by localizing its biosynthesis
    • Nakatogawa H, Murakami A, Mori H et al (2005) SecM facilitates translocase function of SecA by localizing its biosynthesis. Genes Dev 19:436–444
    • (2005) Genes Dev , vol.19 , pp. 436-444
    • Nakatogawa, H.1    Murakami, A.2    Mori, H.3
  • 33
    • 0141864658 scopus 로고    scopus 로고
    • Dysfunctional MreB inhibits chromosome segregation in Escherichia coli
    • Kruse T, Moller-Jensen J, Lobner-Olesen A et al (2003) Dysfunctional MreB inhibits chromosome segregation in Escherichia coli. EMBO J 22:5283–5292
    • (2003) EMBO J , vol.22 , pp. 5283-5292
    • Kruse, T.1    Moller-Jensen, J.2    Lobner-Olesen, A.3
  • 34
    • 12344306119 scopus 로고    scopus 로고
    • The morphogenetic MreBCD proteins of Escherichia coli form an essential membranebound complex
    • Kruse T, Bork-Jensen J, Gerdes K (2005) The morphogenetic MreBCD proteins of Escherichia coli form an essential membranebound complex. Mol Microbiol 55:78–89
    • (2005) Mol Microbiol , vol.55 , pp. 78-89
    • Kruse, T.1    Bork-Jensen, J.2    Gerdes, K.3


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