메뉴 건너뛰기




Volumn 112, Issue 5, 2015, Pages E410-E419

Mechanism of RNA polymerase II bypass of oxidative cyclopurine DNA lesions

Author keywords

Oxidative DNA damage; RNA polymerase II; Transcription factor TFIIF; Transcriptional mutagenesis; Translesion transcription

Indexed keywords

8,5' CYCLO 2' DEOXYADENOSINE; ADENOSINE PHOSPHATE; DEOXYADENOSINE DERIVATIVE; PYRIMIDINE DIMER; RNA POLYMERASE II; UNCLASSIFIED DRUG; DNA; PURINE DERIVATIVE;

EID: 84922309452     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1415186112     Document Type: Article
Times cited : (41)

References (45)
  • 1
    • 0030013201 scopus 로고    scopus 로고
    • Relationships between DNA repair and transcription
    • Friedberg EC (1996) Relationships between DNA repair and transcription. Annu Rev Biochem 65:15-42.
    • (1996) Annu Rev Biochem , vol.65 , pp. 15-42
    • Friedberg, E.C.1
  • 2
    • 0035902108 scopus 로고    scopus 로고
    • Genome maintenance mechanisms for preventing cancer
    • Hoeijmakers JH (2001) Genome maintenance mechanisms for preventing cancer. Nature 411(6835):366-374.
    • (2001) Nature , vol.411 , Issue.6835 , pp. 366-374
    • Hoeijmakers, J.H.1
  • 3
    • 63849131910 scopus 로고    scopus 로고
    • Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance
    • Waters LS, et al. (2009) Eukaryotic translesion polymerases and their roles and regulation in DNA damage tolerance. Microbiol Mol Biol Rev 73(1):134-154.
    • (2009) Microbiol Mol Biol Rev , vol.73 , Issue.1 , pp. 134-154
    • Waters, L.S.1
  • 4
    • 14544287434 scopus 로고    scopus 로고
    • Replication of damaged DNA by translesion synthesis in human cells
    • Lehmann AR (2005) Replication of damaged DNA by translesion synthesis in human cells. FEBS Lett 579(4):873-876.
    • (2005) FEBS Lett , vol.579 , Issue.4 , pp. 873-876
    • Lehmann, A.R.1
  • 5
    • 84883689904 scopus 로고    scopus 로고
    • Effect of a monofunctional phenanthriplatin-DNA adduct on RNA polymerase II transcriptional fidelity and translesion synthesis
    • Kellinger MW, Park GY, Chong J, Lippard SJ, Wang D (2013) Effect of a monofunctional phenanthriplatin-DNA adduct on RNA polymerase II transcriptional fidelity and translesion synthesis. J Am Chem Soc 135(35):13054-13061.
    • (2013) J Am Chem Soc , vol.135 , Issue.35 , pp. 13054-13061
    • Kellinger, M.W.1    Park, G.Y.2    Chong, J.3    Lippard, S.J.4    Wang, D.5
  • 6
    • 84859710196 scopus 로고    scopus 로고
    • Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage
    • Walmacq C, et al. (2012) Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage. Mol Cell 46(1):18-29.
    • (2012) Mol Cell , vol.46 , Issue.1 , pp. 18-29
    • Walmacq, C.1
  • 7
    • 33846980409 scopus 로고    scopus 로고
    • CPD damage recognition by transcribing RNA polymerase II
    • Brueckner F, Hennecke U, Carell T, Cramer P (2007) CPD damage recognition by transcribing RNA polymerase II. Science 315(5813):859-862.
    • (2007) Science , vol.315 , Issue.5813 , pp. 859-862
    • Brueckner, F.1    Hennecke, U.2    Carell, T.3    Cramer, P.4
  • 8
    • 0028106162 scopus 로고
    • Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template
    • Donahue BA, Yin S, Taylor JS, Reines D, Hanawalt PC (1994) Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template. Proc Natl Acad Sci USA 91(18):8502-8506.
    • (1994) Proc Natl Acad Sci USA , vol.91 , Issue.18 , pp. 8502-8506
    • Donahue, B.A.1    Yin, S.2    Taylor, J.S.3    Reines, D.4    Hanawalt, P.C.5
  • 9
    • 0034698033 scopus 로고    scopus 로고
    • The oxidative DNA lesion 8,5′-(S)-cyclo-2′-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells
    • Brooks PJ, et al. (2000) The oxidative DNA lesion 8,5′-(S)-cyclo-2′-deoxyadenosine is repaired by the nucleotide excision repair pathway and blocks gene expression in mammalian cells. J Biol Chem 275(29):22355-22362.
    • (2000) J Biol Chem , vol.275 , Issue.29 , pp. 22355-22362
    • Brooks, P.J.1
  • 10
    • 34047096423 scopus 로고    scopus 로고
    • Transcriptional bypass of bulky DNA lesions causes new mutant RNA transcripts in human cells
    • Marietta C, Brooks PJ (2007) Transcriptional bypass of bulky DNA lesions causes new mutant RNA transcripts in human cells. EMBO Rep 8(4):388-393.
    • (2007) EMBO Rep , vol.8 , Issue.4 , pp. 388-393
    • Marietta, C.1    Brooks, P.J.2
  • 11
    • 0029785723 scopus 로고    scopus 로고
    • Blockage of RNA polymerase as a possible trigger for u.V. Light-induced apoptosis
    • Ljungman M, Zhang F (1996) Blockage of RNA polymerase as a possible trigger for u.v. light-induced apoptosis. Oncogene 13(4):823-831.
    • (1996) Oncogene , vol.13 , Issue.4 , pp. 823-831
    • Ljungman, M.1    Zhang, F.2
  • 13
    • 0026111317 scopus 로고
    • The 'A rule' of mutagen specificity: A consequence of DNA polymerase bypass of non-instructional lesions?
    • Strauss BS (1991) The 'A rule' of mutagen specificity: A consequence of DNA polymerase bypass of non-instructional lesions? BioEssays 13(2):79-84.
    • (1991) Bioessays , vol.13 , Issue.2 , pp. 79-84
    • Strauss, B.S.1
  • 14
    • 0037196080 scopus 로고    scopus 로고
    • New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions
    • Taylor JS (2002) New structural and mechanistic insight into the A-rule and the instructional and non-instructional behavior of DNA photoproducts and other lesions. Mutat Res 510(1-2):55-70.
    • (2002) Mutat Res , vol.510 , Issue.1-2 , pp. 55-70
    • Taylor, J.S.1
  • 15
    • 77953112483 scopus 로고    scopus 로고
    • X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct
    • Wang D, Zhu G, Huang X, Lippard SJ (2010) X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct. Proc Natl Acad Sci USA 107(21):9584-9589.
    • (2010) Proc Natl Acad Sci USA , vol.107 , Issue.21 , pp. 9584-9589
    • Wang, D.1    Zhu, G.2    Huang, X.3    Lippard, S.J.4
  • 16
    • 33644661156 scopus 로고    scopus 로고
    • RNA polymerase encounters with DNA damage: Transcription-coupled repair or transcriptional mutagenesis?
    • Saxowsky TT, Doetsch PW (2006) RNA polymerase encounters with DNA damage: Transcription-coupled repair or transcriptional mutagenesis? Chem Rev 106(2): 474-488.
    • (2006) Chem Rev , vol.106 , Issue.2 , pp. 474-488
    • Saxowsky, T.T.1    Doetsch, P.W.2
  • 17
    • 0037196071 scopus 로고    scopus 로고
    • Translesion synthesis by RNA polymerases: Occurrence and biological implications for transcriptional mutagenesis
    • Doetsch PW (2002) Translesion synthesis by RNA polymerases: Occurrence and biological implications for transcriptional mutagenesis. Mutat Res 510(1-2):131-140.
    • (2002) Mutat Res , vol.510 , Issue.1-2 , pp. 131-140
    • Doetsch, P.W.1
  • 18
    • 84899810741 scopus 로고    scopus 로고
    • Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis
    • Nagel ZD, et al. (2014) Multiplexed DNA repair assays for multiple lesions and multiple doses via transcription inhibition and transcriptional mutagenesis. Proc Natl Acad Sci USA 111(18):E1823-E1832.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.18 , pp. E1823-E1832
    • Nagel, Z.D.1
  • 19
    • 41649091432 scopus 로고    scopus 로고
    • Bulky DNA lesions induced by reactive oxygen species
    • Wang Y (2008) Bulky DNA lesions induced by reactive oxygen species. Chem Res Toxicol 21(2):276-281.
    • (2008) Chem Res Toxicol , vol.21 , Issue.2 , pp. 276-281
    • Wang, Y.1
  • 20
    • 48149099902 scopus 로고    scopus 로고
    • 8,5′-Cyclopurine-2′-deoxynucleosides in DNA: Mechanisms of formation, measurement, repair and biological effects
    • Jaruga P, Dizdaroglu M (2008) 8,5′-Cyclopurine-2′-deoxynucleosides in DNA: Mechanisms of formation, measurement, repair and biological effects. DNA Repair (Amst) 7(9):1413-1425.
    • (2008) DNA Repair (Amst) , vol.7 , Issue.9 , pp. 1413-1425
    • Jaruga, P.1    Dizdaroglu, M.2
  • 21
    • 84864010124 scopus 로고    scopus 로고
    • The oxidative DNA lesions 8,5′-cyclopurines accumulate with aging in a tissue-specific manner
    • Wang J, Clauson CL, Robbins PD, Niedernhofer LJ, Wang Y (2012) The oxidative DNA lesions 8,5′-cyclopurines accumulate with aging in a tissue-specific manner. Aging Cell 11(4):714-716.
    • (2012) Aging Cell , vol.11 , Issue.4 , pp. 714-716
    • Wang, J.1    Clauson, C.L.2    Robbins, P.D.3    Niedernhofer, L.J.4    Wang, Y.5
  • 22
    • 0034636004 scopus 로고    scopus 로고
    • Removal of oxygen free-radical-induced 5′,8-purine cyclodeoxynucleosides from DNA by the nucleotide excision-repair pathway in human cells
    • Kuraoka I, et al. (2000) Removal of oxygen free-radical-induced 5′,8-purine cyclodeoxynucleosides from DNA by the nucleotide excision-repair pathway in human cells. Proc Natl Acad Sci USA 97(8):3832-3837.
    • (2000) Proc Natl Acad Sci USA , vol.97 , Issue.8 , pp. 3832-3837
    • Kuraoka, I.1
  • 23
    • 76749136353 scopus 로고    scopus 로고
    • Evidence for the involvement of DNA repair enzyme NEIL1 in nucleotide excision repair of (5'R)- and (5'S)-8,5′-cyclo-2′-deoxyadenosines
    • Jaruga P, Xiao Y, Vartanian V, Lloyd RS, Dizdaroglu M (2010) Evidence for the involvement of DNA repair enzyme NEIL1 in nucleotide excision repair of (5'R)- and (5'S)-8,5′-cyclo-2′-deoxyadenosines. Biochemistry 49(6):1053-1055.
    • (2010) Biochemistry , vol.49 , Issue.6 , pp. 1053-1055
    • Jaruga, P.1    Xiao, Y.2    Vartanian, V.3    Lloyd, R.S.4    Dizdaroglu, M.5
  • 24
    • 84870296240 scopus 로고    scopus 로고
    • A quantitative assay for assessing the effects of DNA lesions on transcription
    • You C, et al. (2012) A quantitative assay for assessing the effects of DNA lesions on transcription. Nat Chem Biol 8(10):817-822.
    • (2012) Nat Chem Biol , vol.8 , Issue.10 , pp. 817-822
    • You, C.1
  • 25
    • 44449094019 scopus 로고    scopus 로고
    • Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation
    • Kireeva ML, et al. (2008) Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation. Mol Cell 30(5):557-566.
    • (2008) Mol Cell , vol.30 , Issue.5 , pp. 557-566
    • Kireeva, M.L.1
  • 26
    • 67749137639 scopus 로고    scopus 로고
    • Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II
    • Walmacq C, et al. (2009) Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II. J Biol Chem 284(29):19601-19612.
    • (2009) J Biol Chem , vol.284 , Issue.29 , pp. 19601-19612
    • Walmacq, C.1
  • 27
    • 33749681410 scopus 로고    scopus 로고
    • Template misalignment in multisubunit RNA polymerases and transcription fidelity
    • Kashkina E, et al. (2006) Template misalignment in multisubunit RNA polymerases and transcription fidelity. Mol Cell 24(2):257-266.
    • (2006) Mol Cell , vol.24 , Issue.2 , pp. 257-266
    • Kashkina, E.1
  • 28
    • 4444228491 scopus 로고    scopus 로고
    • Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism
    • Zhang C, Burton ZF (2004) Transcription factors IIF and IIS and nucleoside triphosphate substrates as dynamic probes of the human RNA polymerase II mechanism. J Mol Biol 342(4):1085-1099.
    • (2004) J Mol Biol , vol.342 , Issue.4 , pp. 1085-1099
    • Zhang, C.1    Burton, Z.F.2
  • 29
    • 84899867364 scopus 로고    scopus 로고
    • Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms
    • Schweikhard V, et al. (2014) Transcription factors TFIIF and TFIIS promote transcript elongation by RNA polymerase II by synergistic and independent mechanisms. Proc Natl Acad Sci USA 111(18):6642-6647.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.18 , pp. 6642-6647
    • Schweikhard, V.1
  • 30
    • 33751559420 scopus 로고    scopus 로고
    • RNA polymerase II bypass of oxidative DNA damage is regulated by transcription elongation factors
    • Charlet-Berguerand N, et al. (2006) RNA polymerase II bypass of oxidative DNA damage is regulated by transcription elongation factors. EMBO J 25(23):5481-5491.
    • (2006) EMBO J , vol.25 , Issue.23 , pp. 5481-5491
    • Charlet-Berguerand, N.1
  • 31
    • 0023015325 scopus 로고
    • Mutagenesis by apurinic/apyrimidinic sites
    • Loeb LA, Preston BD (1986) Mutagenesis by apurinic/apyrimidinic sites. Annu Rev Genet 20:201-230.
    • (1986) Annu Rev Genet , vol.20 , pp. 201-230
    • Loeb, L.A.1    Preston, B.D.2
  • 32
    • 0028027428 scopus 로고
    • Nucleotide insertion and primer extension at abasic template sites in different sequence contexts
    • Goodman MF, Cai H, Bloom LB, Eritja R (1994) Nucleotide insertion and primer extension at abasic template sites in different sequence contexts. Ann NY Acad Sci 726(1994):132-142.
    • (1994) Ann NY Acad Sci , vol.726 , Issue.1994 , pp. 132-142
    • Goodman, M.F.1    Cai, H.2    Bloom, L.B.3    Eritja, R.4
  • 33
    • 39549097102 scopus 로고    scopus 로고
    • Mutational specificity and genetic control of replicative bypass of an abasic site in yeast
    • Pagès V, Johnson RE, Prakash L, Prakash S (2008) Mutational specificity and genetic control of replicative bypass of an abasic site in yeast. Proc Natl Acad Sci USA 105(4): 1170-1175.
    • (2008) Proc Natl Acad Sci USA , vol.105 , Issue.4 , pp. 1170-1175
    • Pagès, V.1    Johnson, R.E.2    Prakash, L.3    Prakash, S.4
  • 34
    • 0041864009 scopus 로고    scopus 로고
    • Replication of a cis-syn thymine dimer at atomic resolution
    • Ling H, Boudsocq F, Plosky BS, Woodgate R, Yang W (2003) Replication of a cis-syn thymine dimer at atomic resolution. Nature 424(6952):1083-1087.
    • (2003) Nature , vol.424 , Issue.6952 , pp. 1083-1087
    • Ling, H.1    Boudsocq, F.2    Plosky, B.S.3    Woodgate, R.4    Yang, W.5
  • 35
    • 33751235874 scopus 로고    scopus 로고
    • Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis
    • Wang D, Bushnell DA, Westover KD, Kaplan CD, Kornberg RD (2006) Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis. Cell 127(5):941-954.
    • (2006) Cell , vol.127 , Issue.5 , pp. 941-954
    • Wang, D.1    Bushnell, D.A.2    Westover, K.D.3    Kaplan, C.D.4    Kornberg, R.D.5
  • 36
    • 8344234112 scopus 로고    scopus 로고
    • Structural basis of transcription: Nucleotide selection by rotation in the RNA polymerase II active center
    • Westover KD, Bushnell DA, Kornberg RD (2004) Structural basis of transcription: Nucleotide selection by rotation in the RNA polymerase II active center. Cell 119(4): 481-489.
    • (2004) Cell , vol.119 , Issue.4 , pp. 481-489
    • Westover, K.D.1    Bushnell, D.A.2    Kornberg, R.D.3
  • 37
    • 10944232674 scopus 로고    scopus 로고
    • Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS
    • Kettenberger H, Armache KJ, Cramer P (2004) Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS. Mol Cell 16(6):955-965.
    • (2004) Mol Cell , vol.16 , Issue.6 , pp. 955-965
    • Kettenberger, H.1    Armache, K.J.2    Cramer, P.3
  • 38
    • 0035827332 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution
    • Gnatt AL, Cramer P, Fu J, Bushnell DA, Kornberg RD (2001) Structural basis of transcription: An RNA polymerase II elongation complex at 3.3 A resolution. Science 292(5523):1876-1882.
    • (2001) Science , vol.292 , Issue.5523 , pp. 1876-1882
    • Gnatt, A.L.1    Cramer, P.2    Fu, J.3    Bushnell, D.A.4    Kornberg, R.D.5
  • 39
    • 84901684210 scopus 로고    scopus 로고
    • Millisecond dynamics of RNA polymerase II translocation at atomic resolution
    • Silva DA, et al. (2014) Millisecond dynamics of RNA polymerase II translocation at atomic resolution. Proc Natl Acad Sci USA 111(21):7665-7670.
    • (2014) Proc Natl Acad Sci USA , vol.111 , Issue.21 , pp. 7665-7670
    • Silva, D.A.1
  • 40
    • 70450260475 scopus 로고    scopus 로고
    • Molecular basis of transcriptional mutagenesis at 8-oxoguanine
    • Damsma GE, Cramer P (2009) Molecular basis of transcriptional mutagenesis at 8-oxoguanine. J Biol Chem 284(46):31658-31663.
    • (2009) J Biol Chem , vol.284 , Issue.46 , pp. 31658-31663
    • Damsma, G.E.1    Cramer, P.2
  • 41
    • 0035472817 scopus 로고    scopus 로고
    • Direct and indirect effects of UV radiation on DNA and its components
    • Ravanat JL, Douki T, Cadet J (2001) Direct and indirect effects of UV radiation on DNA and its components. J Photochem Photobiol B 63:88-102.
    • (2001) J Photochem Photobiol B , vol.63 , pp. 88-102
    • Ravanat, J.L.1    Douki, T.2    Cadet, J.3
  • 42
    • 79952017981 scopus 로고    scopus 로고
    • Transcriptional mutagenesis: Causes and involvement in tumour development
    • Brégeon D, Doetsch PW (2011) Transcriptional mutagenesis: Causes and involvement in tumour development. Nat Rev Cancer 11(3):218-227.
    • (2011) Nat Rev Cancer , vol.11 , Issue.3 , pp. 218-227
    • Brégeon, D.1    Doetsch, P.W.2
  • 43
    • 44949263779 scopus 로고    scopus 로고
    • The 8,5′-cyclopurine-2′-deoxynucleosides: Candidate neurodegenerative DNA lesions in xeroderma pigmentosum, and unique probes of transcription and nucleotide excision repair
    • Brooks PJ (2008) The 8,5′-cyclopurine-2′-deoxynucleosides: Candidate neurodegenerative DNA lesions in xeroderma pigmentosum, and unique probes of transcription and nucleotide excision repair. DNA Repair (Amst) 7(7):1168-1179.
    • (2008) DNA Repair (Amst) , vol.7 , Issue.7 , pp. 1168-1179
    • Brooks, P.J.1
  • 44
    • 33745446261 scopus 로고    scopus 로고
    • A mediator-responsive form of metazoan RNA polymerase II
    • Hu X, et al. (2006) A mediator-responsive form of metazoan RNA polymerase II. Proc Natl Acad Sci USA 103(25):9506-9511.
    • (2006) Proc Natl Acad Sci USA , vol.103 , Issue.25 , pp. 9506-9511
    • Hu, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.