Peopling of the North Circumpolar Region - Insights from Y chromosome STR and SNP typing of Greenlanders

PLoS ONE

Volumn 10, Issue 1, 2015, Pages

  Olofsson, Jill Katharina ^a   Pereira, Vania ^a   Børsting, Claus ^a   Morling, Niels ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME VARIANT; CONTROLLED STUDY; EUROPE; GENETIC LINE; GEOGRAPHIC NAMES; GEOGRAPHIC ORIGIN; GREENLAND; HUMAN; INUIT; MALE; NORTH AMERICA; NORTH CIRCUMPOLAR REGION; POPULATION MIGRATION; SHORT TANDEM REPEAT; SINGLE NUCLEOTIDE POLYMORPHISM; THEORY; Y CHROMOSOME; DENMARK; GENETICS; GENOTYPE; MIGRATION; MOLECULAR EVOLUTION;

MICROSATELLITE DNA;

CHROMOSOMES, HUMAN, Y; DENMARK; EVOLUTION, MOLECULAR; GENOTYPE; GREENLAND; HUMAN MIGRATION; HUMANS; MALE; MICROSATELLITE REPEATS; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84922154849     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0116573     Document Type: Article

References (46)

1. Tian C, Gregersen PK, Seldin MF (2008) Accounting for ancestry: population substructure and genome-wide association studies. Hum Mol Genet 17: R143-150. PMID: 18852203
2. Gjertson DW, Brenner CH, Baur MP, Carracedo A, Guidet F, et al. (2007) ISFG: Recommendations on biostatistics in paternity testing. Forensic Sci Int Genet 1: 223-231. doi:10.1016/j.fsigen.2007.06.006 PMID: 19083766
3. Oppenheimer S (2012) Out-of-Africa, the peopling of continents and islands: tracing uniparental gene trees across the map. Philos Trans R Soc Lond B Biol Sci 367: 770-784. doi:10.1098/rstb.2011.0306 PMID: 22312044
4. Jensen J (2006) The Stone Age of Qeqertarsuup Tunua (Disko Bugt). A regional analysis of the Saqqaq and Dorset cultures of Central West Greenland. Meddelelser om Grønland, Man and Society 32: 1-245.
5. Helgason A, Palsson G, Pedersen HS, Angulalik E, Gunnarsdottir ED, et al. (2006) mtDNA variation in Inuit populations of Greenland and Canada: migration history and population structure. Am J Phys Anthropol 130: 123-134. PMID: 16353217
6. Park RW (2000) The Dorset-Thule succession revisited. In: Applet M, Berglund J, Gullov HC, editors. Identities and cultural contacts in the Artic Copenhagen: Danish Polar Center. pp. 192-205.
7. McGhee R (2000) Radiocarbon dating and the timing of the Thule migration. In: Applet M, Berglund J, Gullov HC, editors. Identities and cultural contacts in the Artic Copenhagen: Danish Polar Center. pp. 181-191.
8. Sutherland PD (2000) Strands of culture contact: Dorset-Morse interactions in the Canadian eastern Artic. In: Applet M, Berglund J, Gullov HC, editors. Identities and cultural contacts in the Artic Copenhagen: Danish Polar Center. pp. 159-169.
9. Bosch E, Calafell F, Rosser ZH, Norby S, Lynnerup N, et al. (2003) High level of male-biased Scandinavian admixture in Greenlandic Inuit shown by Y-chromosomal analysis. Hum Genet 112: 353-363. PMID: 12594533
10. Kleivan I (1984) History of Norse Greenland. In: Damas D, editor. Handbook of North American Indians, vol5 The Artic. Washington DC: Smithsonian Inistitution. pp. 549-555.
11. Gad F (1984) History of Colonial Greenland. In:Damas D, editor. Handbook of North American Indians, vol 5 The Artic. Washington DC: Smithsonian Inistitution. pp. 556-576.
12. Pereira V, Tomas C, Sanchez JJ, Syndercombe-Court D, Amorim A, et al. (2014) The peopling of Greenland: further insights from the analysis of genetic diversity using autosomal and X-chromosomal markers. Eur J Hum Genet.
13. Sanchez JJ, Børsting C, Hernandez A, Mengel-Jørgensen J, Morling N (2004) Y chromosome SNP haplogroups in Danes, Greenlanders and Somalis. International Congress Series 1261: 347-349.
14. Olofsson JK, Børsting C, Morling N (2013) Distribution of Y chromosome haplogroup Q in Greenlanders. Forensic Science International: Genetics Supplement Series 4: e220-e221.
15. Schurr TG, Sherry ST (2004) Mitochondrial DNA and Y chromosome diversity and the peopling of the Americas: evolutionary and demographic evidence. Am J Hum Biol 16: 420-439. PMID: 15214060
16. O 'Rourke DH, Raff JA (2010) The human genetic history of the Americas: the final frontier. Curr Biol 20:R202-207. doi: 10.1016/j.cub.2009.11.051 PMID: 20178768
17. Reich D, Patterson N, Campbell D, Tandon A, Mazieres S, et al. (2012) Reconstructing Native American population history. Nature 488: 370-374. PMID: 22801491
18. Mulligan CJ, Hunley K, Cole S, Long JC (2004) Population genetics, history, and health patterns in native americans. Annu Rev Genomics Hum Genet 5: 295-315. PMID: 15485351
19. Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, et al. (2008) New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18: 830-838. doi: 10.1101/gr.7172008 PMID: 18385274
20. Andersen MM, Eriksen PS, Morling N (2014) Cluster analysis of European Y-chromosomal STR haplotypes using the discrete Laplace method. Forensic Sci Int Genet 11: 182-194. doi:10.1016/j.fsigen.2014.03.016 PMID: 24793845
21. Purps J, Siegert S, Willuweit S, Nagy M, Alves C, et al. (2014) A global analysis of Y-chromosomal haplotype diversity for 23 STR loci. Forensic Sci Int Genet 12C: 12-23. PMID: 24854874
22. Dulik MC, Owings AC, Gaieski JB, Vilar MG, Andre A, et al. (2012) Y-chromosome analysis reveals genetic divergence and new founding native lineages in Athapaskan - and Eskimoan-speaking populations. Proc Natl Acad Sci U S A 109: 8471-8476. doi: 10.1073/pnas.1118760109 PMID: 22586127
23. Bandelt HJ, Forster P, Rohl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48. PMID: 10331250
24. Lappalainen T, Hannelius U, Salmela E, von Dobeln U, Lindgren CM, et al. (2009) Population structure in contemporary Sweden - a Y-chromosomal and mitochondrial DNA analysis. Ann Hum Genet 73: 61-73. doi:10.1111/j.1469-1809.2008.00487.x PMID: 19040656
25. Karlsson AO, Wallerstrom T, Gotherstrom A, Holmlund G (2006) Y-chromosome diversity in Sweden - a long-time perspective. Eur J Hum Genet 14: 963-970. PMID: 16724001
26. Dupuy BM, Stenersen M, Lu TT, Olaisen B (2006) Geographical heterogeneity of Y-chromosomal lineages in Norway. Forensic Sci Int 164: 10-19. PMID: 16337760
27. Helgason A, Sigureth ardottir S, Nicholson J, Sykes B, Hill EW, et al. (2000) Estimating Scandinavian and Gaelic ancestry in the male settlers of Iceland. Am J Hum Genet 67: 697-717. PMID: 10931763
28. Roewer L, Nothnagel M, Gusmao L, Gomes V, Gonzalez M, et al. (2013) Continent-wide decoupling of Y-chromosomal genetic variation from language and geography in native South Americans. PLoS Genet 9: e1003460. doi:10.1371/journal.pgen.1003460 PMID: 23593040
29. Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF (2004) High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol Biol Evol 21: 164-175. PMID: 14595095
30. Battaglia V, Grugni V, Perego UA, Angerhofer N, Gomez-Palmieri JE, et al. (2013) The first peopling of South America: new evidence from Y-chromosome haplogroup Q. PLoS One 8: e71390. doi: 10.1371/journal.pone.0071390 PMID: 23990949
31. Bortolini MC, Salzano FM, Thomas MG, Stuart S, Nasanen SP, et al. (2003) Y-chromosome evidence for differing ancient demographic histories in the Americas. Am J Hum Genet 73: 524-539. PMID: 12900798
32. Regueiro M, Alvarez J, Rowold D, Herrera RJ (2013) On the origins, rapid expansion and genetic diversity of Native Americans from hunting-gatherers to agriculturalists. Am J Phys Anthropol 150: 333-348. doi: 10.1002/ajpa.22207 PMID: 23283701
33. Schurr TG, Dulik MC, Owings AC, Zhadanov SI, Gaieski JB, et al. (2012) Clan, language, and migration history has shaped genetic diversity in Haida and Tlingit populations from Southeast Alaska. Am J Phys Anthropol 148: 422-435. doi: 10.1002/ajpa.22068 PMID: 22549307
34. Bisso-Machado R, Jota MS, Ramallo V, Paixao-Cortes VR, Lacerda DR, et al. (2011) Distribution of Y-chromosome Q lineages in Native Americans. Am J Hum Biol 23: 563-566. PMID: 21544893
35. Zhong H, Shi H, Qi XB, Duan ZY, Tan PP, et al. (2011) Extended Y chromosome investigation suggests postglacial migrations of modern humans into East Asia via the northern route. Mol Biol Evol 28: 717-727. doi: 10.1093/molbev/msq247 PMID: 20837606
36. Su B, Xiao C, Deka R, Seielstad MT, Kangwanpong D, et al. (2000) Y chromosome haplotypes reveal prehistorical migrations to the Himalayas. Hum Genet 107: 582-590. PMID: 11153912
37. Gayden T, Cadenas AM, Regueiro M, Singh NB, Zhivotovsky LA, et al. (2007) The Himalayas as a directional barrier to gene flow. Am J Hum Genet 80: 884-894. PMID: 17436243
38. Raghavan M, DeGiorgio M, Albrechtsen A, Moltke I, Skoglund P, et al. (2014) The genetic prehistory of the New World Arctic. Science 345: 1255832. doi: 10.1126/science.1255832 PMID: 25170159
39. Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, et al. (2010) Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762. doi: 10.1038/nature08835 PMID: 20148029
40. Johansen P, Andersen JD, Borsting C, Morling N (2013) Evaluation of the iPLEX(R) Sample ID Plus Panel designed for the Sequenom MassARRAY(R) system. A SNP typing assay developed for human identification and sample tracking based on the SNPforID panel. Forensic Sci Int Genet 7: 482-487. doi: 10.1016/j.fsigen.2013.04.009 PMID: 23948317
41. Excoffier L, Lischer HE (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10: 564-567. doi: 10.1111/j.1755-0998.2010.02847.x PMID: 21565059
42. Kayser M, Krawczak M, Excoffier L, Dieltjes P, Corach D, et al. (2001) An extensive analysis of Y-chromosomal microsatellite haplotypes in globally dispersed human populations. Am J Hum Genet 68: 990-1018. PMID: 11254455
43. Zhivotovsky LA (2001) Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow. Mol Biol Evol 18: 700-709. PMID: 11319254
44. Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, et al. (2006) Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78: 202-221. PMID: 16400607
45. Wilson IJ, Weale ME, Balding DJ (2003) Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. Journal of the Royal Statistical Society Series a-Statistics in Society 166: 155-188.
46. Xue Y, Zerjal T, Bao W, Zhu S, Shu Q, et al. (2006) Male demography in East Asia: a north-south contrast in human population expansion times. Genetics 172: 2431-2439. PMID: 16489223