-
1
-
-
84865069787
-
IAA8 involved in lateral root formation interacts with the TIR1 auxin receptor and ARF transcription factors in Arabidopsis
-
Arase, F., Nishitani, H., Egusa, M., Nishimoto, N., Sakurai, S., Sakamoto, N., et al. IAA8 involved in lateral root formation interacts with the TIR1 auxin receptor and ARF transcription factors in Arabidopsis. PLoS ONE 7:e43414. doi: 10.1371/journal.pone.0043414
-
Plos ONE
, vol.7
-
-
Arase, F.1
Nishitani, H.2
Egusa, M.3
Nishimoto, N.4
Sakurai, S.5
Sakamoto, N.6
-
2
-
-
44949240533
-
Auxin: The looping star in plant development
-
Benjamins, R., and Scheres, B. (2008). Auxin: the looping star in plant development. Annu. Rev. Plant Biol. 59, 443-465. doi: 10.1146/annurev.arplant.58.032806.103805
-
(2008)
Annu. Rev. Plant Biol
, vol.59
, pp. 443-465
-
-
Benjamins, R.1
Scheres, B.2
-
3
-
-
77953186504
-
Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network
-
Boruc, J., Van Den Daele, H., Hollunder, J., Rombauts, S., Mylle, E., Hilson, P., et al. (2010). Functional modules in the Arabidopsis core cell cycle binary protein-protein interaction network. Plant Cell 22, 1264-1280. doi: 10.1105/tpc.109.073635
-
(2010)
Plant Cell
, vol.22
, pp. 1264-1280
-
-
Boruc, J.1
Van Den Daele, H.2
Hollunder, J.3
Rombauts, S.4
Mylle, E.5
Hilson, P.6
-
4
-
-
64349094767
-
Tissue specificity and the human protein interaction network
-
Bossi, A., and Lehner, B. (2009). Tissue specificity and the human protein interaction network. Mol. Syst. Biol. 5:260. doi: 10.1038/msb.2009.17
-
(2009)
Mol. Syst. Biol
, vol.5
, pp. 260
-
-
Bossi, A.1
Lehner, B.2
-
5
-
-
71149122029
-
Mechanism of auxin-regulated gene expression in plants
-
Chapman, E. J., and Estelle, M. (2009). Mechanism of auxin-regulated gene expression in plants. Annu. Rev. Genet. 43, 265-285. doi: 10.1146/annurev-genet-102108-134148
-
(2009)
Annu. Rev. Genet
, vol.43
, pp. 265-285
-
-
Chapman, E.J.1
Estelle, M.2
-
6
-
-
33748445836
-
Subcellular localization of interacting proteins by bimolecular fluorescence complementation in planta
-
Citovsky, V., Lee, L. Y., Vyas, S., Glick, E., Chen, M. H., Vainstein, A., et al.Subcellular localization of interacting proteins by bimolecular fluorescence complementation in planta. J. Mol. Biol. 362, 1120-1131. doi: 10.1016/j.jmb.2006.08.017
-
J. Mol. Biol
, vol.362
, pp. 1120-1131
-
-
Citovsky, V.1
Lee, L.Y.2
Vyas, S.3
Glick, E.4
Chen, M.H.5
Vainstein, A.6
-
7
-
-
23944492980
-
Comprehensive interaction map of the Arabidopsis MADS Box transcription factors
-
De Folter, S., Immink, R. G., Kieffer, M., Parenicova, L., Henz, S. R., Weigel, D., et al. (2005). Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. PlantCell 17, 1424-1433. doi: 10.1105/tpc.105.031831
-
(2005)
Plantcell
, vol.17
, pp. 1424-1433
-
-
De Folter, S.1
Immink, R.G.2
Kieffer, M.3
Parenicova, L.4
Henz, S.R.5
Weigel, D.6
-
8
-
-
77957829871
-
A novel Aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity
-
De Rybel, B., Vassileva, V., Parizot, B., Demeulenaere, M., Grunewald, W., Audenaert, D., et al. (2010). A novel Aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr. Biol. 1697-1706. doi: 10.1016/j.cub.2010.09.007
-
(2010)
Curr. Biol
, pp. 1697-1706
-
-
De Rybel, B.1
Vassileva, V.2
Parizot, B.3
Demeulenaere, M.4
Grunewald, W.5
Audenaert, D.6
-
9
-
-
33644836631
-
Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis
-
Fukaki, H., Nakao, Y., Okushima, Y., Theologis, A., and Tasaka, M. (2005). Tissue-specific expression of stabilized SOLITARY-ROOT/IAA14 alters lateral root development in Arabidopsis. Plant J. 44, 382-395. doi: 10.1111/j.1365-313X.2005.02537.x
-
(2005)
Plant J
, vol.44
, pp. 382-395
-
-
Fukaki, H.1
Nakao, Y.2
Okushima, Y.3
Theologis, A.4
Tasaka, M.5
-
10
-
-
84859973898
-
Multiple AUX/IAA-ARF modules regulate lateral root formation: The role of Arabidopsis SHY2/IAA3-mediated auxin signalling
-
Goh, T., Kasahara, H., Mimura, T., Kamiya, Y., and Fukaki, H. (2012). Multiple AUX/IAA-ARF modules regulate lateral root formation: the role of Arabidopsis SHY2/IAA3-mediated auxin signalling. Philos. T. Roy. Soc. B 367, 1461-1468. doi: 10.1098/rstb.2011.0232
-
(2012)
Philos. T. Roy. Soc. B
, vol.367
, pp. 1461-1468
-
-
Goh, T.1
Kasahara, H.2
Mimura, T.3
Kamiya, Y.4
Fukaki, H.5
-
11
-
-
34848909529
-
Auxin response factors
-
Guilfoyle, T. J., and Hagen, G. (2007). Auxin response factors. Curr. Opin. Plant Biol. 10,453-460. doi: 10.1016/j.pbi.2007.08.014
-
(2007)
Curr. Opin. Plant Biol
, vol.10
, pp. 453-460
-
-
Guilfoyle, T.J.1
Hagen, G.2
-
12
-
-
84860323198
-
Getting agrasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions
-
Guilfoyle, T. J., andHagen, G. (2012). Getting agrasp on domain III/IV responsible for Auxin Response Factor-IAA protein interactions. Plant Sci. 190, 82-88. doi: 10.1016/j.plantsci.2012.04.003
-
(2012)
Plant Sci
, vol.190
, pp. 82-88
-
-
Guilfoyle, T.J.1
Hagen, G.2
-
13
-
-
58549085207
-
Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: Cooperative cell wall modification during parasitism
-
Hewezi, T., Howe, P., Maier, T. R., Hussey, R. S., Mitchum, M. G., Davis, L., et al. (2008). Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell 20, 3080-3093. doi: 10.1105/tpc.108.063065
-
(2008)
Plant Cell
, vol.20
, pp. 3080-3093
-
-
Hewezi, T.1
Howe, P.2
Maier, T.R.3
Hussey, R.S.4
Mitchum, M.G.5
Davis, L.6
-
14
-
-
0031757669
-
Multiple sequence alignment with Clustal X. Trends Biochem
-
Jeanmougin, F., Thompson, J. D., Gouy, M., Higgins, D. G., and Gibson, T. J. (1998). Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23, 403-405. doi: 10.1016/S0968-0004(98)01285-7
-
(1998)
Sci
, vol.23
, pp. 403-405
-
-
Jeanmougin, F.1
Thompson, J.D.2
Gouy, M.3
Higgins, D.G.4
Gibson, T.J.5
-
15
-
-
67649802666
-
Linking development to defense: Auxin in plant-pathogen interactions
-
Kazan, K., and Manners, J. M. (2009). Linking development to defense: auxin in plant-pathogen interactions. Trends Plant Sci. 14, 373-382. doi: 10.1016/j.tplants.2009.04.005
-
(2009)
Trends Plant Sci
, vol.14
, pp. 373-382
-
-
Kazan, K.1
Manners, J.M.2
-
16
-
-
80053396732
-
Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis
-
Klopffleisch, K., Phan, N., Augustin, K., Bayne, R. S., Booker, K. S., Botella, J. R., et al. (2011). Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Mol. Syst. Biol. 7, 532. doi: 10.1038/msb.2011.66
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 532
-
-
Klopffleisch, K.1
Phan, N.2
Augustin, K.3
Bayne, R.S.4
Booker, K.S.5
Botella, J.R.6
-
17
-
-
78651301328
-
International Nucleotide Sequence Database Collaboration. (2011). The sequence read archive
-
Leinonen, R., Sugawara, H., Shumway, M., and International Nucleotide Sequence Database Collaboration. (2011). The sequence read archive. Nucleic Acids Res. D19-D21. doi: 10.1093/nar/gkq1019
-
Nucleic Acids Res
, pp. D19-D21
-
-
Leinonen, R.1
Sugawara, H.2
Shumway, M.3
-
18
-
-
80655139075
-
Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split fireflyluciferase complementation
-
Li, J. F., Bush, J., Xiong, Y., Li, L., and McCormack, M. (2011). Large-scale protein-protein interaction analysis in Arabidopsis mesophyll protoplasts by split fireflyluciferase complementation. PLoS ONE 6:e27364. doi: 10.1371/jour-nal.pone.0027364
-
(2011)
Plos ONE
, vol.6
-
-
Li, J.F.1
Bush, J.2
Xiong, Y.3
Li, L.4
McCormack, M.5
-
19
-
-
84859632989
-
Auxin and ethylene: Collaborators or competitors?
-
Muday, G. K., Rahman, A., and Binder, B. M. (2012). Auxin and ethylene: collaborators or competitors? Trends Plant Sci. 17, 181-195. doi: 10.1016/j.tplants.2012.02.001
-
(2012)
Trends Plant Sci
, vol.17
, pp. 181-195
-
-
Muday, G.K.1
Rahman, A.2
Binder, B.M.3
-
20
-
-
27144474564
-
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
-
Nagpal, P., Ellis, C. M., Weber, H., Ploense, S. E., Barkawi, L. S., Guilfoyle, T. J., et al. (2005). Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132, 4107-4118. doi: 10.1242/dev.01955
-
(2005)
Development
, vol.132
, pp. 4107-4118
-
-
Nagpal, P.1
Ellis, C.M.2
Weber, H.3
Ploense, S.E.4
Barkawi, L.S.5
Guilfoyle, T.J.6
-
21
-
-
84892736334
-
ATTED-II in 2014: Evaluation of gene coexpression in agriculturally important plants
-
Obayashi, T., Okamura, Y., Ito, S., Tadaka, S., Aoki, Y., Shirota, M., et al. (2014). ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. PlantCell Physiol. 55:e6. doi: 10.1093/pcp/pct178
-
(2014)
Plantcell Physiol
, vol.55
, pp. 6
-
-
Obayashi, T.1
Okamura, Y.2
Ito, S.3
Tadaka, S.4
Aoki, Y.5
Shirota, M.6
-
22
-
-
0035027756
-
IAA17/AXR3: Biochemical insight into an auxin mutant phenotype
-
Ouellet, F., Overvoorde, P. J., and Theologis, A. (2001). IAA17/AXR3: biochemical insight into an auxin mutant phenotype. Plant Cell 13, 829-841. doi: 10.1105/tpc.13.4.829
-
(2001)
Plant Cell
, vol.13
, pp. 829-841
-
-
Ouellet, F.1
Overvoorde, P.J.2
Theologis, A.3
-
23
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolec- ular interaction networks
-
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., et al. (2003). Cytoscape: a software environment for integrated models of biomolec- ular interaction networks. Genome Res. 13, 2498-2504. doi: 10.1101/gr.1239303
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
-
24
-
-
77956562704
-
Functional analysis ofthe structural domain ofARF proteins in rice (Oryzasativa L.)
-
Shen, C., Wang, S., Bai, Y., Wu, Y., Zhang, S., Chen, M., et al. (2010). Functional analysis ofthe structural domain ofARF proteins in rice (Oryzasativa L.). J. Exp. Bot. 61, 3971-3981. doi: 10.1093/jxb/erq208
-
(2010)
J. Exp. Bot
, vol.61
, pp. 3971-3981
-
-
Shen, C.1
Wang, S.2
Bai, Y.3
Wu, Y.4
Zhang, S.5
Chen, M.6
-
25
-
-
38549144806
-
The Arabidopsis Information Resource (TAIR): Gene structure and function annotation
-
Swarbreck, D., Wilks, C., Lamesch, P., Berardini, T. Z., Garcia-Hernandez, M., Foerster, H., et al. (2008). The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 36, D1009-D1014. doi: 10.1093/nar/gkm965
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D1009-D1014
-
-
Swarbreck, D.1
Wilks, C.2
Lamesch, P.3
Berardini, T.Z.4
Garcia-Hernandez, M.5
Foerster, H.6
-
26
-
-
40449131628
-
TOPLESS mediates auxin- dependent transcriptional repression during Arabidopsis embryogenesis
-
Szemenyei, H., Hannon, M., and Long, J. A. (2008). TOPLESS mediates auxin- dependent transcriptional repression during Arabidopsis embryogenesis. Science 319, 1384-1386. doi: 10.1126/science.1151461
-
(2008)
Science
, vol.319
, pp. 1384-1386
-
-
Szemenyei, H.1
Hannon, M.2
Long, J.A.3
-
27
-
-
74549181321
-
Arabidopsis AUXIN RESPONSE FACTOR6 and 8 regulate jasmonic acid biosynthesis and floral organ development via repression of class 1 KNOX genes
-
Tabata, R., Ikezaki, M., Fujibe, T., Aida, M., Tian, C., Ueno, Y., et al. (2010). Arabidopsis AUXIN RESPONSE FACTOR6 and 8 regulate jasmonic acid biosynthesis and floral organ development via repression of class 1 KNOX genes. Plant Cell Physiol. 51, 164-175. doi: 10.1093/pcp/pcp176
-
(2010)
Plant Cell Physiol
, vol.51
, pp. 164-175
-
-
Tabata, R.1
Ikezaki, M.2
Fujibe, T.3
Aida, M.4
Tian, C.5
Ueno, Y.6
-
28
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729. doi: 10.1093/molbev/mst197
-
(2013)
Mol. Biol. Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
29
-
-
1042267600
-
MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana
-
Tatematsu, K., Kumagai, S., Muto, H., Sato, A., Watahiki, M. K., Harper, R. M., et al. (2004). MASSUGU2 encodes Aux/IAA19, an auxin-regulated protein that functions together with the transcriptional activator NPH4/ARF7 to regulate differential growth responses of hypocotyl and formation of lateral roots in Arabidopsis thaliana. Plant Cell 16, 379-393. doi: 10.1105/tpc.018630
-
(2004)
Plant Cell
, vol.16
, pp. 379-393
-
-
Tatematsu, K.1
Kumagai, S.2
Muto, H.3
Sato, A.4
Watahiki, M.K.5
Harper, R.M.6
-
30
-
-
0037329943
-
The roles of auxin response factor domains in auxin-responsive transcription
-
Tiwari, S. B., Hagen, G., and Guilfoyle, T. (2003). The roles of auxin response factor domains in auxin-responsive transcription. Plant Cell 15, 533-543. doi: 10.1105/tpc.008417
-
(2003)
Plant Cell
, vol.15
, pp. 533-543
-
-
Tiwari, S.B.1
Hagen, G.2
Guilfoyle, T.3
-
31
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., and Salzberg, S. L. (2009). TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111. doi: 10.1093/bioinfor-matics/btp120
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
32
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat
-
Trapnell, C., Williams, B. A., Pertea, G., Mortazavi, A., Kwan, G., Van Baren, M. J., et al. (2010). Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515. doi: 10.1038/nbt.1621
-
(2010)
Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
-
33
-
-
47249161081
-
Domain mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana
-
Uehara, T., Okushima, Y., Mimura, T., Tasaka, M., and Fukaki, H. (2008). Domain mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana. Plant Cell Physiol. 49, 1025-1038. doi: 10.1093/pcp/pcn079
-
(2008)
Plant Cell Physiol
, vol.49
, pp. 1025-1038
-
-
Uehara, T.1
Okushima, Y.2
Mimura, T.3
Tasaka, M.4
Fukaki, H.5
-
34
-
-
79960090553
-
The auxin signalling network translates dynamic input into robust patterning at the shoot apex
-
Vernoux, T., Brunoud, G., Farcot, E., Morin, V., Van Den Daele, H., Legrand, J., et al. (2011). The auxin signalling network translates dynamic input into robust patterning at the shoot apex. Mol. Syst. Biol. 7, 508. doi: 10.1038/msb.2011.39
-
(2011)
Mol. Syst. Biol
, vol.7
, pp. 508
-
-
Vernoux, T.1
Brunoud, G.2
Farcot, E.3
Morin, V.4
Van Den Daele, H.5
Legrand, J.6
-
35
-
-
84878582444
-
ARF-Aux/IAA interactions through domain III/IV are not strictly required for auxin-responsive gene expression. PlantSignal
-
Wang, S., Hagen, G., and Guilfoyle, T. J. (2013).ARF-Aux/IAA interactions through domain III/IV are not strictly required for auxin-responsive gene expression. PlantSignal. Behav. 8:e24526. doi: 10.4161/psb.24526
-
(2013)
Behav
, pp. 8
-
-
Wang, S.1
Hagen, G.2
Guilfoyle, T.J.3
-
36
-
-
20044371065
-
Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators
-
Weijers, D., Benkova, E., Jager, K. E., Schlereth, A., Hamann, T., Kientz, M., et al. (2005). Developmental specificity of auxin response by pairs of ARF and Aux/IAA transcriptional regulators. Embo J. 24, 1874-1885. doi: 10.1038/sj.emboj.7600659
-
(2005)
Embo J
, vol.24
, pp. 1874-1885
-
-
Weijers, D.1
Benkova, E.2
Jager, K.E.3
Schlereth, A.4
Hamann, T.5
Kientz, M.6
-
37
-
-
77952525724
-
Auxin biosynthesis and its role in plant development
-
Zhao, Y. (2010). Auxin biosynthesis and its role in plant development. Annu. Rev. PlantBiol. 61, 49-64. doi: 10.1146/annurev-arplant-042809-112308
-
(2010)
Annu. Rev. Plantbiol
, vol.61
, pp. 49-64
-
-
Zhao, Y.1
|