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Volumn 5, Issue 6, 2014, Pages 626-635

Functional redundancy in the nuclear compartmentalization of the Late-Replicating genome

Author keywords

DamID; Heterochromatin; Localization; Nuclear organization; Nuclear periphery; Pericentromeric heterochromatin; Perinucleolar heterochromatin; Replication timing; Repressive compartments

Indexed keywords

DACTINOMYCIN; LAMIN B; EUCHROMATIN; HETEROCHROMATIN;

EID: 84921915746     PISSN: 19491034     EISSN: 19491042     Source Type: Journal    
DOI: 10.4161/19491034.2014.990863     Document Type: Article
Times cited : (33)

References (41)
  • 1
    • 1442288553 scopus 로고    scopus 로고
    • The spatial organization of the genome in mammalian cells
    • PMID:15196468
    • Pederson T. The spatial organization of the genome in mammalian cells. Curr Opin Genet Dev 2004; 14:203-9; PMID:15196468
    • (2004) Curr Opin Genet Dev , vol.14 , pp. 203-209
    • Pederson, T.1
  • 2
    • 18744375181 scopus 로고    scopus 로고
    • Concepts in nuclear architecture
    • PMID:15832379
    • Misteli T. Concepts in nuclear architecture. Bioessays 2005; 27:477-87; PMID:15832379
    • (2005) Bioessays , vol.27 , pp. 477-487
    • Misteli, T.1
  • 3
    • 79952370251 scopus 로고    scopus 로고
    • On emerging nuclear order
    • PMID:21383074
    • Rajapakse I, Groudine M. On emerging nuclear order. J Cell Biol 2011; 192:711-21; PMID:21383074; http://dx.doi.org/10.1083/jcb.201010129
    • (2011) J Cell Biol , vol.192 , pp. 711-721
    • Rajapakse, I.1    Groudine, M.2
  • 4
    • 84875200698 scopus 로고    scopus 로고
    • Functional implications of genome topology
    • PMID:23463314
    • Cavalli G, Misteli T. Functional implications of genome topology. Nat Struct Mol Biol 2013; 20:290-9; PMID:23463314; http://dx.doi.org/10.1038/nsmb.2474
    • (2013) Nat Struct Mol Biol , vol.20 , pp. 290-299
    • Cavalli, G.1    Misteli, T.2
  • 5
    • 0000251397 scopus 로고
    • Das heterochromatin der Moose
    • Heitz E. Das heterochromatin der Moose. Jahrb Wiss Botanik 1928; 69:762-818.
    • (1928) Jahrb Wiss Botanik , vol.69 , pp. 762-818
    • Heitz, E.1
  • 6
    • 9544245803 scopus 로고    scopus 로고
    • Heterochromatin structure and function
    • PMID:15519697
    • Dillon N. Heterochromatin structure and function. Biol Cell 2004; 96:631-7; PMID:15519697
    • (2004) Biol Cell , vol.96 , pp. 631-637
    • Dillon, N.1
  • 7
    • 84897042327 scopus 로고    scopus 로고
    • Nucleolus and nuclear periphery: Velcro for heterochromatin
    • PMID:24690547
    • Padeken J, Heun P. Nucleolus and nuclear periphery: velcro for heterochromatin. Curr Opin Cell Biol 2014; 28:54-60; PMID:24690547; http://dx.doi.org/10.1016/j.ceb.2014.03.001
    • (2014) Curr Opin Cell Biol , vol.28 , pp. 54-60
    • Padeken, J.1    Heun, P.2
  • 9
    • 77952994784 scopus 로고    scopus 로고
    • Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types
    • PMID:20430782
    • Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM. Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types. Genome Res 2010; 20:761-70; PMID:20430782; http://dx.doi.org/10.1101/gr.099655.109
    • (2010) Genome Res , vol.20 , pp. 761-770
    • Ryba, T.1    Hiratani, I.2    Lu, J.3    Itoh, M.4    Kulik, M.5    Zhang, J.6    Schulz, T.C.7    Robins, A.J.8    Dalton, S.9    Gilbert, D.M.10
  • 10
    • 0024526184 scopus 로고
    • Mapping replicational sites in the eucaryotic cell nucleus
    • PMID:2910875
    • Nakayasu H, Berezney R. Mapping replicational sites in the eucaryotic cell nucleus. J Cell Biol 1989; 108:1-11; PMID:2910875; http://dx.doi.org/10.1083/jcb.108.1.1
    • (1989) J Cell Biol , vol.108 , pp. 1-11
    • Nakayasu, H.1    Berezney, R.2
  • 11
    • 0026596327 scopus 로고
    • Dynamic organization of DNA replication in mammalian cell nuclei: Spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences
    • PMID:1740468
    • O’Keefe RT, Henderson SC, Spector DL. Dynamic organization of DNA replication in mammalian cell nuclei: spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences. J Cell Biol 1992; 116:1095-110; PMID:1740468; http://dx.doi.org/10.1083/jcb.116.5.1095
    • (1992) J Cell Biol , vol.116 , pp. 1095-1110
    • O’Keefe, R.T.1    Henderson, S.C.2    Spector, D.L.3
  • 12
    • 0031417772 scopus 로고    scopus 로고
    • Spatial organization of large-scale chromatin domains in the nucleus: A magnified view of single chromosome territories
    • PMID:9412456
    • Ferreira J, Paolella G, Ramos C, Lamond AI. Spatial organization of large-scale chromatin domains in the nucleus: a magnified view of single chromosome territories. J Cell Biol 1997; 139:1597-610; PMID:9412456; http://dx.doi.org/10.1083/jcb.139.7.1597
    • (1997) J Cell Biol , vol.139 , pp. 1597-1610
    • Ferreira, J.1    Paolella, G.2    Ramos, C.3    Lamond, A.I.4
  • 13
    • 0033588973 scopus 로고    scopus 로고
    • Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments
    • PMID:10491386
    • Sadoni N, Langer S, Fauth C, Bernardi G, Cremer T, Turner BM, Zink D. Nuclear organization of mammalian genomes. Polar chromosome territories build up functionally distinct higher order compartments. J Cell Biol 1999; 146:1211-26; PMID:10491386; http://dx.doi.org/10.1083/jcb.146.6.1211
    • (1999) J Cell Biol , vol.146 , pp. 1211-1226
    • Sadoni, N.1    Langer, S.2    Fauth, C.3    Bernardi, G.4    Cremer, T.5    Turner, B.M.6    Zink, D.7
  • 15
    • 33747831899 scopus 로고    scopus 로고
    • DamID: Mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase
    • PMID:16938559
    • Greil F, Moorman C, Van Steensel B. DamID: mapping of in vivo protein-genome interactions using tethered DNA adenine methyltransferase. Meth Enzymol 2006; 410:342-59; PMID:16938559; http://dx.doi.org/10.1016/S0076-6879(06)10016-6
    • (2006) Meth Enzymol , vol.410 , pp. 342-359
    • Greil, F.1    Moorman, C.2    Van Steensel, B.3
  • 17
    • 0035253606 scopus 로고    scopus 로고
    • The spatial organization of human chromosomes within the nuclei of normal and emerinmutant cells
    • PMID:11159939
    • Boyle S, Gilchrist S, Bridger JM, Mahy NL, Ellis JA, Bickmore WA. The spatial organization of human chromosomes within the nuclei of normal and emerinmutant cells. Human Molecular Genetics 2001; 10:211-9; PMID:11159939; http://dx.doi.org/10.1093/hmg/10.3.211
    • (2001) Human Molecular Genetics , vol.10 , pp. 211-219
    • Boyle, S.1    Gilchrist, S.2    Bridger, J.M.3    Mahy, N.L.4    Ellis, J.A.5    Bickmore, W.A.6
  • 18
    • 0014432829 scopus 로고
    • Localization and kinetics of formation of nuclear heterodisperse RNA, cytoplasmic heterodisperse RNA and polyribosomeassociated messenger RNA in HeLa cells
    • PMID:4106524
    • Penman S, Vesco C, Penman M. Localization and kinetics of formation of nuclear heterodisperse RNA, cytoplasmic heterodisperse RNA and polyribosomeassociated messenger RNA in HeLa cells. J Mol Biol 1968; 34:49-69; PMID:4106524; http://dx.doi.org/10.1016/0022-2836(68)90234-9
    • (1968) J Mol Biol , vol.34 , pp. 49-69
    • Penman, S.1    Vesco, C.2    Penman, M.3
  • 19
    • 0014859062 scopus 로고
    • Inhibition of RNA synthesis by actinomycin D: Characteristic dose-response of different RNA species
    • PMID:5500970
    • Perry RP, Kelley DE. Inhibition of RNA synthesis by actinomycin D: characteristic dose-response of different RNA species. J Cell Physiol 1970; 76:127-39; PMID:5500970; http://dx.doi.org/10.1002/jcp.1040760202
    • (1970) J Cell Physiol , vol.76 , pp. 127-139
    • Perry, R.P.1    Kelley, D.E.2
  • 20
    • 0033553877 scopus 로고    scopus 로고
    • Differences in the localization and morphology of chromosomes in the human nucleus
    • PMID:10366586
    • Croft JA, Bridger JM, Boyle S, Perry P, Teague P, Bickmore WA. Differences in the localization and morphology of chromosomes in the human nucleus. J Cell Biol 1999; 145:1119-31; PMID:10366586; http://dx.doi.org/10.1083/jcb.145.6.1119
    • (1999) J Cell Biol , vol.145 , pp. 1119-1131
    • Croft, J.A.1    Bridger, J.M.2    Boyle, S.3    Perry, P.4    Teague, P.5    Bickmore, W.A.6
  • 22
    • 0041885232 scopus 로고    scopus 로고
    • Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei
    • PMID:12952935
    • Cremer M. Inheritance of gene density-related higher order chromatin arrangements in normal and tumor cell nuclei. J Cell Biol 2003; 162:809-20; PMID:12952935
    • (2003) J Cell Biol , vol.162 , pp. 809-820
    • Cremer, M.1
  • 23
    • 19644381697 scopus 로고    scopus 로고
    • Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states
    • PMID:15788566
    • Wu R, Terry AV, Singh PB, Gilbert DM. Differential subnuclear localization and replication timing of histone H3 lysine 9 methylation states. Mol Biol Cell 2005; 16:2872-81; PMID:15788566; http://dx.doi.org/10.1091/mbc.E04-11-0997
    • (2005) Mol Biol Cell , vol.16 , pp. 2872-2881
    • Wu, R.1    Terry, A.V.2    Singh, P.B.3    Gilbert, D.M.4
  • 24
    • 0031437119 scopus 로고    scopus 로고
    • Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin
    • PMID:9413993
    • Brown KE, Guest SS, Smale ST, Hahm K, Merkenschlager M, Fisher AG. Association of transcriptionally silent genes with Ikaros complexes at centromeric heterochromatin. Cell 1997; 91:845-54; PMID:9413993; http://dx.doi.org/10.1016/S0092-8674(00)80472-9
    • (1997) Cell , vol.91 , pp. 845-854
    • Brown, K.E.1    Guest, S.S.2    Smale, S.T.3    Hahm, K.4    Merkenschlager, M.5    Fisher, A.G.6
  • 26
    • 84870390011 scopus 로고    scopus 로고
    • Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation
    • PMID:23084836
    • Tanaka A, Tanizawa H, Sriswasdi S, Iwasaki O, Chatterjee AG, Speicher DW, Levin HL, Noguchi E, Noma K-I. Epigenetic regulation of condensin-mediated genome organization during the cell cycle and upon DNA damage through histone H3 lysine 56 acetylation. Mol Cell 2012; 48:532-46; PMID:23084836; http://dx.doi.org/10.1016/j.molcel.2012.09.011
    • (2012) Mol Cell , vol.48 , pp. 532-546
    • Tanaka, A.1    Tanizawa, H.2    Sriswasdi, S.3    Iwasaki, O.4    Chatterjee, A.G.5    Speicher, D.W.6    Levin, H.L.7    Noguchi, E.8    Noma, K.-I.9
  • 27
    • 78149295090 scopus 로고    scopus 로고
    • High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli
    • PMID:20826608
    • van Koningsbruggen S, Gierlinski M, Schofield P, Martin D, Barton GJ, Ariyurek Y, Dunnen den JT, Lamond AI. High-resolution whole-genome sequencing reveals that specific chromatin domains from most human chromosomes associate with nucleoli. Mol Biol Cell 2010; 21:3735-48; PMID:20826608; http://dx.doi.org/10.1091/mbc.E10-06-0508
    • (2010) Mol Biol Cell , vol.21 , pp. 3735-3748
    • Van Koningsbruggen, S.1    Gierlinski, M.2    Schofield, P.3    Martin, D.4    Barton, G.J.5    Ariyurek, Y.6    Dunnen Den, J.T.7    Lamond, A.I.8
  • 29
    • 0021235210 scopus 로고
    • Different central nervous system cell types display distinct and nonrandom arrangements of satellite DNA sequences
    • PMID:6587343
    • Manuelidis L. Different central nervous system cell types display distinct and nonrandom arrangements of satellite DNA sequences. Proc Natl Acad Sci USA 1984; 81:3123-7; PMID:6587343
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 3123-3127
    • Manuelidis, L.1
  • 30
    • 0035200784 scopus 로고    scopus 로고
    • Chromosomal Gdark bands determine the spatial organization of centromeric heterochromatin in the nucleus
    • PMID:11694589
    • Carvalho C, Pereira HM, Ferreira J, Pina C, Mendonca D, Rosa AC, Carmo-Fonseca M. Chromosomal Gdark bands determine the spatial organization of centromeric heterochromatin in the nucleus. Mol Biol Cell 2001; 12:3563-72; PMID:11694589; http://dx.doi.org/10.1091/mbc.12.11.3563
    • (2001) Mol Biol Cell , vol.12 , pp. 3563-3572
    • Carvalho, C.1    Pereira, H.M.2    Ferreira, J.3    Pina, C.4    Mendonca, D.5    Rosa, A.C.6    Carmo-Fonseca, M.7
  • 31
    • 3543046143 scopus 로고    scopus 로고
    • Differences in centromere positioning of cycling and postmitotic human cell types
    • PMID:15197559
    • Solovei I, Schermelleh L, Düring K, Engelhardt A, Stein S, Cremer C, Cremer T. Differences in centromere positioning of cycling and postmitotic human cell types. Chromosoma 2004; 112:410-23; PMID:15197559; http://dx.doi.org/10.1007/s00412-004-0287-3
    • (2004) Chromosoma , vol.112 , pp. 410-423
    • Solovei, I.1    Schermelleh, L.2    Düring, K.3    Engelhardt, A.4    Stein, S.5    Cremer, C.6    Cremer, T.7
  • 32
    • 26244454608 scopus 로고    scopus 로고
    • Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells
    • PMID:16105879
    • Wiblin AE, Cui W, Clark AJ, Bickmore WA. Distinctive nuclear organisation of centromeres and regions involved in pluripotency in human embryonic stem cells. J Cell Sci 2005; 118:3861-8; PMID:16105879; http://dx.doi.org/10.1242/jcs.02500
    • (2005) J Cell Sci , vol.118 , pp. 3861-3868
    • Wiblin, A.E.1    Cui, W.2    Clark, A.J.3    Bickmore, W.A.4
  • 33
    • 0036006293 scopus 로고    scopus 로고
    • Chromatin motion is constrained by association with nuclear compartments in human cells
    • PMID:11909528
    • Chubb JR, Boyle S, Perry P, Bickmore WA. Chromatin motion is constrained by association with nuclear compartments in human cells. Curr Biol 2002; 12:439-45; PMID:11909528; http://dx.doi.org/10.1016/S0960-9822(02)00695-4
    • (2002) Curr Biol , vol.12 , pp. 439-445
    • Chubb, J.R.1    Boyle, S.2    Perry, P.3    Bickmore, W.A.4
  • 34
    • 84899815048 scopus 로고    scopus 로고
    • Stochastic genome-nuclear lamina interactions: Modulating roles of Lamin A and BAF
    • PMID:24717229
    • Kind J, Van Steensel B. Stochastic genome-nuclear lamina interactions: modulating roles of Lamin A and BAF. Nucleus 2014; 5:124-30; PMID:24717229; http://dx.doi.org/10.4161/nucl.28825
    • (2014) Nucleus , vol.5 , pp. 124-130
    • Kind, J.1    Van Steensel, B.2
  • 35
    • 33744779614 scopus 로고    scopus 로고
    • The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation
    • PMID:16705039
    • Ragoczy T, Bender MA, Telling A, Byron R, Groudine M. The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation. Genes Dev 2006; 20:1447-57; PMID:16705039; http://dx.doi.org/10.1101/gad.1419506
    • (2006) Genes Dev , vol.20 , pp. 1447-1457
    • Ragoczy, T.1    Bender, M.A.2    Telling, A.3    Byron, R.4    Groudine, M.5
  • 36
    • 34250791291 scopus 로고    scopus 로고
    • Detection of in vivo protein-DNA interactions using DamID in mammalian cells
    • PMID:17545983
    • Vogel MJ, Peric-Hupkes D, Van Steensel B. Detection of in vivo protein-DNA interactions using DamID in mammalian cells. Nat Protoc 2007; 2:1467-78; PMID:17545983; http://dx.doi.org/10.1038/nprot.2007.148
    • (2007) Nat Protoc , vol.2 , pp. 1467-1478
    • Vogel, M.J.1    Peric-Hupkes, D.2    Van Steensel, B.3
  • 40
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy Team. Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • PMID:20738864
    • Goecks J, Nekrutenko A, Taylor J, Galaxy Team. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol 2010; 11: R86; PMID:20738864
    • (2010) Genome Biol , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3


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