Genetic tuning of the novel avian influenza A(H7N9) virus during interspecies transmission, China, 2013

Eurosurveillance

Volumn 19, Issue 25, 2014, Pages 1-17

  Wang, D ^a   Yang, L ^a   Gao, R ^a   Zhang, X ^b   Tan, Y ^c   Wu, A ^d   Zhu, W ^a   Zhou, J ^a   Zou, S ^a   Li, Xiyan ^a   Sun, Y ^e   Zhang, Y ^a,f   Liu, Y ^g   Liu, T ^h   Xiong, Y ⁱ   Xu, J ^j   Chen, L ^k   Weng, Y ^l   Qi, X ^m   Guo, J ^a   Li, Xiaodan ^a   Dong, J ^a   Huang, W ^a   Dong, L ^a   Zhao, X ^a   Liu, L ^a   Lu, J ^a   Lan, Y ^a   Wei, H ^a   Xin, L ^a   Chen, Y ^a   Xu, C ^a   Chen, T ^a   Zhu, Y ^a   Jiang, T ^d   Feng, Z ^a   Yang, W ^a   Wang, Y ^a   Zhu, H ⁿ   Guan, Y ^a,e   Gao, G F ^a   Li, D ^a   Han, J ^a   Wang, S ^a   Wu, G ^a   Shu, Y ^a   more..

^a CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^b Shanghai Municipal Center of Disease Control and Prevention   (China)

^c GUANGXI CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^d INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^e Anhui Provincial Institute of Parasitic Diseases   (China)

^f ZHEJIANG PROVINCIAL CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^g Hunan Provincial Center for Disease Control and Prevention   (China)

^h Shandong Provincial Center for Disease Control and Prevention   (China)

ⁱ Jiangxi Provincial Center for Disease Control and Prevention   (China)

^j Institute of Endemic Disease Control   (China)

^k CENTERS FOR DISEASE CONTROL AND PREVENTION   (China)

^l Fujian Provincial Center for Disease Control and Prevention   (China)

^m Jiangsu Provincial Center of Disease Control and Prevention   (China)

ⁿ UNIVERSITY OF HONG KONG   (Hong Kong)

more..

Author keywords

[No Author keywords available]

Indexed keywords

HEMAGGLUTININ; SIALIDASE;

ADULT RESPIRATORY DISTRESS SYNDROME; ANTIBODY RESPONSE; ARTICLE; AVIAN INFLUENZA; CHINA; CLINICAL EXAMINATION; CLINICAL FEATURE; DISEASE CARRIER; DISEASE SURVEILLANCE; DISEASE TRANSMISSION; FEVER; GENETIC ANALYSIS; GEOGRAPHIC DISTRIBUTION; HUMAN; INFECTION CONTROL; NUCLEOTIDE SEQUENCE; PHYLOGENY; PNEUMONIA; PUBLIC HEALTH; QUANTITATIVE ASSAY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RISK FACTOR; RNA EXTRACTION; SEQUENCE ANALYSIS; SEROLOGY; VIRUS CULTURE; VIRUS ISOLATION;

EID: 84921899121     PISSN: 1025496X     EISSN: 15607917     Source Type: Journal    
DOI: 10.2807/1560-7917.es2014.19.25.20836     Document Type: Article

References (28)

1. Gao R, Cao B, Hu Y, Feng Z, Wang D, Hu W, et al. Human infection with a novel avian-origin influenza A (H7N9) virus. N Engl J Med. 2013;368(20):1888-97. http://dx.doi.org/10.1056/NEJMoa1304459PMid:23577628
2. Chen E, Chen Y, Fu L, Chen Z, Gong Z, Mao H, et al. Human infection with avian influenza A(H7N9) virus re-emerges in China in winter 2013. Euro Surveill. 2013;18(43): pii=20616.
3. Chinese Influenza Weekly Report. Week 10 2014. Beijing: Chinese National Influenza Center. [Accessed 17 March 2014] Available from: http://www.cnic.org.cn/eng/show. php?contentid=697
4. Fuller TL, Gilbert M, Martin V, Cappelle J, Hosseini P, Njabo KY, et al. Predicting hotspots for influenza virus reassortment. Emerg Infect Dis. 2013;19(4):581-8. http://dx.doi.org/10.3201/eid1904.120903PMid:23628436PMCid:PMC3647410
5. Cui L, Liu D, Shi W, Pan J, Qi X, Li X, et al. Dynamic reassortments and genetic heterogeneity of the human-infecting influenza A (H7N9) virus. Nat Commun. 2014;5:3142 http://dx.doi.org/10.1038/ncomms4142PMid:24457975
6. Wu A, Su C, Wang D, Peng Y, Liu M, Hua S, et al. Sequential reassortments underlie diverse influenza H7N9 genotypes in China. Cell Host Microbe. 2013;14(4):446-52. http://dx.doi.org/10.1016/j.chom.2013.09.001PMid:24055604
7. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731-9 http://dx.doi.org/10.1093/molbev/msr121PMid:21546353PMCid:PMC3203626
8. Darriba D, Taboada GL, Doallo R, Posada D. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012;9(8):772. http://dx.doi.org/10.1038/nmeth.2109PMid:22847109
9. Pond SL, Frost SD. Datamonkey: rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics. 2005;21(10):2531-3. http://dx.doi.org/10.1093/bioinformatics/bti320PMid:15713735
10. Imai M, Watanabe T, Hatta M, Das SC, Ozawa M, Shinya K, et al. Experimental adaptation of an influenza H5 HA confers respiratory droplet transmission to a reassortant H5 HA/H1N1 virus in ferrets. Nature. 2012;486(7403):420-8.PMid:22722205PMCid:PMC3388103
11. Shi Y, Zhang W, Wang F, Qi J, Wu Y, Song H, et al. Structures and receptor binding of hemagglutinins from human-infecting H7N9 influenza viruses. Science. 2013;342(6155):243-7. http://dx.doi.org/10.1126/science.1242917PMid:24009358
12. Campitelli L, Mogavero E, De Marco MA, Delogu M, Puzelli S, Frezza F, et al. Interspecies transmission of an H7N3 influenza virus from wild birds to intensively reared domestic poultry in Italy. Virology. 2004;323(1):24-36. http://dx.doi.org/10.1016/j.virol.2004.02.015PMid:15165816
13. Munier S, Larcher T, Cormier-Aline F, Soubieux D, Su B, Guigand L, et al. A genetically engineered waterfowl influenza virus with a deletion in the stalk of the neuraminidase has increased virulence for chickens. J Virol. 2010;84(2):940-52. http://dx.doi.org/10.1128/JVI.01581-09PMid:19889765PMCid:PMC2798369
14. van Riel D, Munster VJ, de Wit E, Rimmelzwaan GF, Fouchier RA, Osterhaus AD, et al. H5N1 Virus Attachment to Lower Respiratory Tract. Science. 2006;312(5772):399. http://dx.doi.org/10.1126/science.1125548PMid:16556800
15. Li Z, Chen H, Jiao P, Deng G, Tian G, Li Y, et al. Molecular basis of replication of duck H5N1 influenza viruses in a mammalian mouse model. J.Virol. 2005;79(18):12058-64. http://dx.doi.org/10.1128/JVI.79.18.12058-12064.2005PMid:16140781PMCid:PMC1212590
16. Conenello GM, Zamarin D, Perrone LA, Tumpey T, Palese P. A single mutation in the PB1-F2 of H5N1 (HK/97) and 1918 influenza A viruses contributes to increased virulence. PLoS pathog. 2007;3(10):1414-21. http://dx.doi.org/10.1371/journal.ppat.0030141PMid:17922571PMCid:PMC2000966
17. Liu Q, Lu L, Sun Z, Chen GW, Wen Y, Jiang S. Genomic signature and protein sequence analysis of a novel influenza A (H7N9) virus that causes an outbreak in humans in China. Microbes Infect. 2013;15(6-7):432-9. http://dx.doi.org/10.1016/j.micinf.2013.04.004PMid:23628410
18. Jackson D, Hossain MJ, Hickman D, Perez DR, Lamb RA. A new influenza virus virulence determinant: the NS1 protein four C-terminal residues modulate pathogenicity. Proc Natl Acad Sci U S A. 2008;105(11):4381-6. http://dx.doi.org/10.1073/pnas.0800482105PMid:18334632PMCid:PMC2393797
19. Zhou J, Wang D, Gao R, Zhao B, Song J, Qi X, et al. Biological features of novel avian influenza A (H7N9) virus. Nature. 2013;499(7459):500-3. http://dx.doi.org/10.1038/nature12379PMid:23823727
20. Zhu H, Wang D, Kelvin DJ, Li L, Zheng Z, Yoon SW, et al. Infectivity, transmission, and pathology of human-isolated H7N9 influenza virus in ferrets and pigs. Science. 2013;341(6142):183-6. http://dx.doi.org/10.1126/science.1239844PMid:23704376
21. Lam TT, Wang J, Shen Y, Zhou B, Duan L, Cheung CL, et al. The genesis and source of the H7N9 influenza viruses causing human infections in China. Nature. 2013;502(7470):241-4. http://dx.doi.org/10.1038/nature12515 Mid:23965623PMCid:PMC3801098
22. Matrosovich MN, Krauss S, Webster RG. H9N2 influenza A viruses from poultry in Asia have human virus-like receptor specificity. Virology. 2001;281(2):156-62. http://dx.doi.org/10.1006/viro.2000.0799PMid:11277689
23. Perez DR, Lim W, Seiler JP, Yi G, Peiris M, Shortridge KF, et al. Role of quail in the interspecies transmission of H9 influenza A viruses: molecular changes on HA that correspond to adaptation from ducks to chickens. J Virol. 2003;77(5):3148-56. http://dx.doi.org/10.1128/JVI.77.5.3148-3156.2003PMid:12584339PMCid:PMC149770
24. Liu Y, Han C, Wang X, Lin J, Ma M, Shu Y, et al. Influenza A virus receptors in the respiratory and intestinal tracts of pigeons. Avian Pathol. 2009;38(4):263-6. http://dx.doi.org/10.1080/03079450903055363PMid:19937510
25. Xu KM, Smith GJ, Bahl J, Duan L, Tai H, Vijaykrishna D, et al. The genesis and evolution of H9N2 influenza viruses in poultry from southern China, 2000 to 2005. J Virol. 2007;81(19):10389-401. http://dx.doi.org/10.1128/JVI.00979-07PMid:17652402PMCid:PMC2045440
26. Zhang Q, Shi J, Deng G, Guo J, Zeng X, He X, et al. H7N9 influenza viruses are transmissible in ferrets by respiratory droplet. Science. 2013;341(6144):410-4. http://dx.doi.org/10.1126/science.1240532PMid:23868922
27. Conan A, Goutard FL, Sorn S, Vong S. Biosecurity measures for backyard poultry in developing countries: a systematic review. BMC Vet Res. 2012;8(1):240. http://dx.doi.org/10.1186/1746-6148-8-240PMid:23216706PMCid:PMC3538710
28. World Health Organization (WHO). Human infection with avian influenza A(H7N9) virus – update. Geneva: WHO; 2014. Available from: http://www.who.int/csr/don/2014_02_17/en/