-
1
-
-
82255164138
-
Towards a systems understanding of MHC class I and MHC class II antigen presentation
-
Neefjes, J., Jongsma, M. L., Paul, P., and Bakke, O. (2011) Towards a systems understanding of MHC class I and MHC class II antigen presentation. Nat. Rev. Immunol. 11, 823-836
-
(2011)
Nat. Rev. Immunol.
, vol.11
, pp. 823-836
-
-
Neefjes, J.1
Jongsma, M.L.2
Paul, P.3
Bakke, O.4
-
2
-
-
0027399243
-
Peptides naturally presented by MHC class I molecules
-
Rammensee, H. G., Falk, K., and Rötzschke, O. (1993) Peptides naturally presented by MHC class I molecules. Annu. Rev. Immunol. 11, 213-244
-
(1993)
Annu. Rev. Immunol.
, vol.11
, pp. 213-244
-
-
Rammensee, H.G.1
Falk, K.2
Rötzschke, O.3
-
3
-
-
0346521283
-
Making sense of mass destruction: Quantitating MHC class I antigen presentation
-
Yewdell, J. W., Reits, E., and Neefjes, J. (2003) Making sense of mass destruction: quantitating MHC class I antigen presentation. Nat. Rev. Immunol. 3, 952-961
-
(2003)
Nat. Rev. Immunol.
, vol.3
, pp. 952-961
-
-
Yewdell, J.W.1
Reits, E.2
Neefjes, J.3
-
4
-
-
78650992438
-
The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B∗41 allotypic family
-
Bade-Döding, C., Theodossis, A., Gras, S., Kjer-Nielsen, L., Eiz-Vesper, B., Seltsam, A., Huyton, T., Rossjohn, J., McCluskey, J., and Blasczyk, R. (2011) The impact of human leukocyte antigen (HLA) micropolymorphism on ligand specificity within the HLA-B∗41 allotypic family. Haematologica 96, 110-118
-
(2011)
Haematologica
, vol.96
, pp. 110-118
-
-
Bade-Döding, C.1
Theodossis, A.2
Gras, S.3
Kjer-Nielsen, L.4
Eiz-Vesper, B.5
Seltsam, A.6
Huyton, T.7
Rossjohn, J.8
McCluskey, J.9
Blasczyk, R.10
-
5
-
-
75749136956
-
The HLA-B∗2705 peptidome
-
Ben Dror, L., Barnea, E., Beer, I., Mann, M., and Admon, A. (2010) The HLA-B∗2705 peptidome. Arthritis Rheum. 62, 420-429
-
(2010)
Arthritis Rheum.
, vol.62
, pp. 420-429
-
-
Ben Dror, L.1
Barnea, E.2
Beer, I.3
Mann, M.4
Admon, A.5
-
6
-
-
30544452130
-
Have we cut ourselves too short in mapping CTL epitopes?
-
Burrows, S. R., Rossjohn, J., and McCluskey, J. (2006) Have we cut ourselves too short in mapping CTL epitopes? Trends Immunol. 27, 11-16
-
(2006)
Trends Immunol.
, vol.27
, pp. 11-16
-
-
Burrows, S.R.1
Rossjohn, J.2
McCluskey, J.3
-
7
-
-
59149087069
-
A long, naturally presented immunodominant epitope from NY-ESO-1 tumor antigen: Implications for cancer vaccine design
-
Ebert, L. M., Liu, Y. C., Clements, C. S., Robson, N. C., Jackson, H. M., Markby, J. L., Dimopoulos, N., Tan, B. S., Luescher, I. F., Davis, I. D., Rossjohn, J., Cebon, J., Purcell, A. W., and Chen, W. (2009) A long, naturally presented immunodominant epitope from NY-ESO-1 tumor antigen: implications for cancer vaccine design. Cancer Res. 69, 1046-1054
-
(2009)
Cancer Res.
, vol.69
, pp. 1046-1054
-
-
Ebert, L.M.1
Liu, Y.C.2
Clements, C.S.3
Robson, N.C.4
Jackson, H.M.5
Markby, J.L.6
Dimopoulos, N.7
Tan, B.S.8
Luescher, I.F.9
Davis, I.D.10
Rossjohn, J.11
Cebon, J.12
Purcell, A.W.13
Chen, W.14
-
8
-
-
84880062482
-
The human leukocyte antigen-presented ligandome of B lymphocytes
-
Hassan, C., Kester, M. G., de Ru, A. H., Hombrink, P., Drijfhout, J. W., Nijveen, H., Leunissen, J. A., Heemskerk, M. H., Falkenburg, J. H., and van Veelen, P. A. (2013) The human leukocyte antigen-presented ligandome of B lymphocytes. Mol. Cell. Proteomics 12, 1829-1843
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 1829-1843
-
-
Hassan, C.1
Kester, M.G.2
De Ru, A.H.3
Hombrink, P.4
Drijfhout, J.W.5
Nijveen, H.6
Leunissen, J.A.7
Heemskerk, M.H.8
Falkenburg, J.H.9
Van Veelen, P.A.10
-
9
-
-
84896980006
-
Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD)
-
Mommen, G. P., Frese, C. K., Meiring, H. D., van Gaans-van den Brink, J., de Jong, A. P., van Els, C. A., and Heck, A. J. (2014) Expanding the detectable HLA peptide repertoire using electron-transfer/higher-energy collision dissociation (EThcD). Proc. Natl. Acad. Sci. U.S.A. 111, 4507-4512
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. 4507-4512
-
-
Mommen, G.P.1
Frese, C.K.2
Meiring, H.D.3
Van Gaans-van Den Brink, J.4
De Jong, A.P.5
Van Els, C.A.6
Heck, A.J.7
-
10
-
-
0035927041
-
An alternative open reading frame of the human macrophage colony-stimulating factor gene is independently translated and codes for an antigenic peptide of 14 amino acids recognized by tumor-infiltrating CD8 T lymphocytes
-
Probst-Kepper, M., Stroobant, V., Kridel, R., Gaugler, B., Landry, C., Brasseur, F., Cosyns, J. P., Weynand, B., Boon, T., and Van Den Eynde, B. J. (2001) An alternative open reading frame of the human macrophage colony-stimulating factor gene is independently translated and codes for an antigenic peptide of 14 amino acids recognized by tumor-infiltrating CD8 T lymphocytes. J. Exp. Med. 193, 1189-1198
-
(2001)
J. Exp. Med.
, vol.193
, pp. 1189-1198
-
-
Probst-Kepper, M.1
Stroobant, V.2
Kridel, R.3
Gaugler, B.4
Landry, C.5
Brasseur, F.6
Cosyns, J.P.7
Weynand, B.8
Boon, T.9
Van Den Eynde, B.J.10
-
11
-
-
84860371053
-
Secreted HLA recapitulates the immunopeptidome and allows in-depth coverage of HLA A∗02:01 ligands
-
Scull, K. E., Dudek, N. L., Corbett, A. J., Ramarathinam, S. H., Gorasia, D. G., Williamson, N. A., and Purcell, A. W. (2012) Secreted HLA recapitulates the immunopeptidome and allows in-depth coverage of HLA A∗02:01 ligands. Mol. Immunol. 51, 136-142
-
(2012)
Mol. Immunol.
, vol.51
, pp. 136-142
-
-
Scull, K.E.1
Dudek, N.L.2
Corbett, A.J.3
Ramarathinam, S.H.4
Gorasia, D.G.5
Williamson, N.A.6
Purcell, A.W.7
-
12
-
-
21244484755
-
High resolution structures of highly bulged viral epitopes bound to major histocompatibility complex class I. Implications for T-cell receptor engagement and T-cell immunodominance
-
Tynan, F. E., Borg, N. A., Miles, J. J., Beddoe, T., El-Hassen, D., Silins, S. L., van Zuylen, W. J., Purcell, A. W., Kjer-Nielsen, L., McCluskey, J., Burrows, S. R., and Rossjohn, J. (2005) High resolution structures of highly bulged viral epitopes bound to major histocompatibility complex class I. Implications for T-cell receptor engagement and T-cell immunodominance. J. Biol. Chem. 280, 23900-23909
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 23900-23909
-
-
Tynan, F.E.1
Borg, N.A.2
Miles, J.J.3
Beddoe, T.4
El-Hassen, D.5
Silins, S.L.6
Van Zuylen, W.J.7
Purcell, A.W.8
Kjer-Nielsen, L.9
McCluskey, J.10
Burrows, S.R.11
Rossjohn, J.12
-
13
-
-
43249126282
-
+ T-cell repertoire selection in a persistent viral infection
-
+ T-cell repertoire selection in a persistent viral infection. Blood 111, 4283-4292
-
(2008)
Blood
, vol.111
, pp. 4283-4292
-
-
Wynn, K.K.1
Fulton, Z.2
Cooper, L.3
Silins, S.L.4
Gras, S.5
Archbold, J.K.6
Tynan, F.E.7
Miles, J.J.8
McCluskey, J.9
Burrows, S.R.10
Rossjohn, J.11
Khanna, R.12
-
14
-
-
84878387798
-
Highly divergent T-cell receptor binding modes underlie specific recognition of a bulged viral peptide bound to a human leukocyte antigen class I molecule
-
Liu, Y. C., Miles, J. J., Neller, M. A., Gostick, E., Price, D. A., Purcell, A. W., McCluskey, J., Burrows, S. R., Rossjohn, J., and Gras, S. (2013) Highly divergent T-cell receptor binding modes underlie specific recognition of a bulged viral peptide bound to a human leukocyte antigen class I molecule. J. Biol. Chem. 288, 15442-15454
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 15442-15454
-
-
Liu, Y.C.1
Miles, J.J.2
Neller, M.A.3
Gostick, E.4
Price, D.A.5
Purcell, A.W.6
McCluskey, J.7
Burrows, S.R.8
Rossjohn, J.9
Gras, S.10
-
15
-
-
27544446623
-
T cell receptor recognition of a "super-bulged" major histocompatibility complex class I-bound peptide
-
Tynan, F. E., Burrows, S. R., Buckle, A. M., Clements, C. S., Borg, N. A., Miles, J. J., Beddoe, T., Whisstock, J. C., Wilce, M. C., Silins, S. L., Burrows, J. M., Kjer-Nielsen, L., Kostenko, L., Purcell, A. W., McCluskey, J., and Rossjohn, J. (2005) T cell receptor recognition of a "super-bulged" major histocompatibility complex class I-bound peptide. Nat. Immunol. 6, 1114-1122
-
(2005)
Nat. Immunol.
, vol.6
, pp. 1114-1122
-
-
Tynan, F.E.1
Burrows, S.R.2
Buckle, A.M.3
Clements, C.S.4
Borg, N.A.5
Miles, J.J.6
Beddoe, T.7
Whisstock, J.C.8
Wilce, M.C.9
Silins, S.L.10
Burrows, J.M.11
Kjer-Nielsen, L.12
Kostenko, L.13
Purcell, A.W.14
McCluskey, J.15
Rossjohn, J.16
-
16
-
-
84859510074
-
The energetic basis underpinning T-cell teceptor tecognition of a super-bulged peptide bound to a major histocompatibility complex class I molecule
-
Liu, Y. C., Chen, Z., Burrows, S. R., Purcell, A. W., McCluskey, J., Rossjohn, J., and Gras, S. (2012) The energetic basis underpinning T-cell teceptor tecognition of a super-bulged peptide bound to a major histocompatibility complex class I molecule. J. Biol. Chem. 287, 12267-12276
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 12267-12276
-
-
Liu, Y.C.1
Chen, Z.2
Burrows, S.R.3
Purcell, A.W.4
McCluskey, J.5
Rossjohn, J.6
Gras, S.7
-
17
-
-
64149115648
-
The peptide length specificity of some HLA class I alleles is very broad and includes peptides of up to 25 amino acids in length
-
Bell, M. J., Burrows, J. M., Brennan, R., Miles, J. J., Tellam, J., McCluskey, J., Rossjohn, J., Khanna, R., and Burrows, S. R. (2009) The peptide length specificity of some HLA class I alleles is very broad and includes peptides of up to 25 amino acids in length. Mol. Immunol. 46, 1911-1917
-
(2009)
Mol. Immunol.
, vol.46
, pp. 1911-1917
-
-
Bell, M.J.1
Burrows, J.M.2
Brennan, R.3
Miles, J.J.4
Tellam, J.5
McCluskey, J.6
Rossjohn, J.7
Khanna, R.8
Burrows, S.R.9
-
18
-
-
84875970851
-
Discovery of T cell epitopes implementing HLA-peptidomics into a reverse immunology approach
-
Hombrink, P., Hassan, C., Kester, M. G., de Ru, A. H., van Bergen, C. A., Nijveen, H., Drijfhout, J. W., Falkenburg, J. H., Heemskerk, M. H., and van Veelen, P. A. (2013) Discovery of T cell epitopes implementing HLA-peptidomics into a reverse immunology approach. J. Immunol. 190, 3869-3877
-
(2013)
J. Immunol.
, vol.190
, pp. 3869-3877
-
-
Hombrink, P.1
Hassan, C.2
Kester, M.G.3
De Ru, A.H.4
Van Bergen, C.A.5
Nijveen, H.6
Drijfhout, J.W.7
Falkenburg, J.H.8
Heemskerk, M.H.9
Van Veelen, P.A.10
-
19
-
-
0030825370
-
A novel, highly efficient peptide-HLA class I binding assay using unfolded heavy chain molecules: Identification of HIV-1 derived peptides that bind to HLA-A∗0201 and HLA-A∗0301
-
Tan, T. L., Geluk, A., Toebes, M., Ottenhoff, T. H., and Drijfhout, J. W. (1997) A novel, highly efficient peptide-HLA class I binding assay using unfolded heavy chain molecules: identification of HIV-1 derived peptides that bind to HLA-A∗0201 and HLA-A∗0301. J. Immunol. Methods 205, 201-209
-
(1997)
J. Immunol. Methods
, vol.205
, pp. 201-209
-
-
Tan, T.L.1
Geluk, A.2
Toebes, M.3
Ottenhoff, T.H.4
Drijfhout, J.W.5
-
20
-
-
84855367088
-
A structural basis for varied alphabeta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule
-
Gras, S., Wilmann, P. G., Chen, Z., Halim, H., Liu, Y. C., Kjer-Nielsen, L., Purcell, A. W., Burrows, S. R., McCluskey, J., and Rossjohn, J. (2012) A structural basis for varied alphabeta TCR usage against an immunodominant EBV antigen restricted to a HLA-B8 molecule. J. Immunol. 188, 311-321
-
(2012)
J. Immunol.
, vol.188
, pp. 311-321
-
-
Gras, S.1
Wilmann, P.G.2
Chen, Z.3
Halim, H.4
Liu, Y.C.5
Kjer-Nielsen, L.6
Purcell, A.W.7
Burrows, S.R.8
McCluskey, J.9
Rossjohn, J.10
-
23
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4. (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763
-
(1994)
Acta Crystallogr. D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
24
-
-
0035788107
-
Pushing the boundaries of molecular replacement with maximum likelihood
-
Read, R. J. (2001) Pushing the boundaries of molecular replacement with maximum likelihood. Acta Crystallogr. D Biol. Crystallogr. 57, 1373-1382
-
(2001)
Acta Crystallogr. D Biol. Crystallogr.
, vol.57
, pp. 1373-1382
-
-
Read, R.J.1
-
25
-
-
68949108186
-
Structural bases for the affinity-driven selection of a public TCR against a dominant human cytomegalovirus epitope
-
Gras, S., Saulquin, X., Reiser, J. B., Debeaupuis, E., Echasserieau, K., Kissenpfennig, A., Legoux, F., Chouquet, A., Le Gorrec, M., Machillot, P., Neveu, B., Thielens, N., Malissen, B., Bonneville, M., and Housset, D. (2009) Structural bases for the affinity-driven selection of a public TCR against a dominant human cytomegalovirus epitope. J. Immunol. 183, 430-437
-
(2009)
J. Immunol.
, vol.183
, pp. 430-437
-
-
Gras, S.1
Saulquin, X.2
Reiser, J.B.3
Debeaupuis, E.4
Echasserieau, K.5
Kissenpfennig, A.6
Legoux, F.7
Chouquet, A.8
Le Gorrec, M.9
Machillot, P.10
Neveu, B.11
Thielens, N.12
Malissen, B.13
Bonneville, M.14
Housset, D.15
-
26
-
-
77949535720
-
Features and development of Coot
-
Emsley, P., Lohkamp, B., Scott, W. G., and Cowtan, K. (2010) Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 66, 486-501
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
27
-
-
76449098262
-
PHENIX: A comprehensive Python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., Mc-Coy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C., and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 66, 213-221
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
Mc-Coy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
29
-
-
84899080404
-
The nature and extent of contributions by defective ribosome products to the HLA peptidome
-
Bourdetsky, D., Schmelzer, C. E., and Admon, A. (2014) The nature and extent of contributions by defective ribosome products to the HLA peptidome. Proc. Natl. Acad. Sci. U.S.A. 111, E1591-E1599
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E1591-E1599
-
-
Bourdetsky, D.1
Schmelzer, C.E.2
Admon, A.3
-
30
-
-
0034913229
-
ER aminopeptidases generate a unique pool of peptides for MHC class I molecules
-
Serwold, T., Gaw, S., and Shastri, N. (2001) ER aminopeptidases generate a unique pool of peptides for MHC class I molecules. Nat. Immunol. 2, 644-651
-
(2001)
Nat. Immunol.
, vol.2
, pp. 644-651
-
-
Serwold, T.1
Gaw, S.2
Shastri, N.3
-
31
-
-
6344272484
-
Conformational restraints and flexibility of 14-meric peptides in complex with HLAB∗3501
-
Probst-Kepper, M., Hecht, H. J., Herrmann, H., Janke, V., Ocklenburg, F., Klempnauer, J., van den Eynde, B. J., and Weiss, S. (2004) Conformational restraints and flexibility of 14-meric peptides in complex with HLAB∗3501. J. Immunol. 173, 5610-5616
-
(2004)
J. Immunol.
, vol.173
, pp. 5610-5616
-
-
Probst-Kepper, M.1
Hecht, H.J.2
Herrmann, H.3
Janke, V.4
Ocklenburg, F.5
Klempnauer, J.6
Van Den Eynde, B.J.7
Weiss, S.8
-
32
-
-
84880118403
-
+ T cell responses
-
+ T cell responses. J. Immunol. 191, 561-571
-
(2013)
J. Immunol.
, vol.191
, pp. 561-571
-
-
Rist, M.J.1
Theodossis, A.2
Croft, N.P.3
Neller, M.A.4
Welland, A.5
Chen, Z.6
Sullivan, L.C.7
Burrows, J.M.8
Miles, J.J.9
Brennan, R.M.10
Gras, S.11
Khanna, R.12
Brooks, A.G.13
McCluskey, J.14
Purcell, A.W.15
Rossjohn, J.16
Burrows, S.R.17
-
33
-
-
0035126190
-
Two different, highly exposed, bulged structures for an unusually long peptide bound to rat MHC class I RT1-Aa
-
Speir, J. A., Stevens, J., Joly, E., Butcher, G. W., and Wilson, I. A. (2001) Two different, highly exposed, bulged structures for an unusually long peptide bound to rat MHC class I RT1-Aa. Immunity 14, 81-92
-
(2001)
Immunity
, vol.14
, pp. 81-92
-
-
Speir, J.A.1
Stevens, J.2
Joly, E.3
Butcher, G.W.4
Wilson, I.A.5
-
34
-
-
77950374922
-
Constraints within major histocompatibility complex class I restricted peptides: Presentation and consequences for T-cell recognition
-
Theodossis, A., Guillonneau, C., Welland, A., Ely, L. K., Clements, C. S., Williamson, N. A., Webb, A. I., Wilce, J. A., Mulder, R. J., Dunstone, M. A., Doherty, P. C., McCluskey, J., Purcell, A. W., Turner, S. J., and Rossjohn, J. (2010) Constraints within major histocompatibility complex class I restricted peptides: presentation and consequences for T-cell recognition. Proc. Natl. Acad. Sci. U.S.A. 107, 5534-5539
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 5534-5539
-
-
Theodossis, A.1
Guillonneau, C.2
Welland, A.3
Ely, L.K.4
Clements, C.S.5
Williamson, N.A.6
Webb, A.I.7
Wilce, J.A.8
Mulder, R.J.9
Dunstone, M.A.10
Doherty, P.C.11
McCluskey, J.12
Purcell, A.W.13
Turner, S.J.14
Rossjohn, J.15
-
35
-
-
0029809474
-
Translocation of long peptides by transporters associated with antigen processing (TAP)
-
Koopmann, J. O., Post, M., Neefjes, J. J., Hämmerling, G. J., and Momburg, F. (1996) Translocation of long peptides by transporters associated with antigen processing (TAP). Eur. J. Immunol. 26, 1720-1728
-
(1996)
Eur. J. Immunol.
, vol.26
, pp. 1720-1728
-
-
Koopmann, J.O.1
Post, M.2
Neefjes, J.J.3
Hämmerling, G.J.4
Momburg, F.5
|