-
1
-
-
84955734139
-
Reaction Classification and Knowledge Acquisition
-
Gasteiger, J., Ed.; Wiley-VCH Verlag: Weinheim, Germany
-
Chen, L. Reaction Classification and Knowledge Acquisition. In Handbook of Chemoinformatics; Gasteiger, J., Ed.; Wiley-VCH Verlag: Weinheim, Germany, 2003; pp 348-390.
-
(2003)
Handbook of Chemoinformatics
, pp. 348-390
-
-
Chen, L.1
-
2
-
-
84902817544
-
Review of Chemical Reaction Database Systems, Computer-Aided Synthesis Design, Reaction Prediction and Synthetic Feasibility
-
Warr, W. A.; Short, A. Review of Chemical Reaction Database Systems, Computer-Aided Synthesis Design, Reaction Prediction and Synthetic Feasibility. Mol. Informatics 2014, 33 (6-7), 469-476.
-
(2014)
Mol. Informatics
, vol.33
, Issue.6-7
, pp. 469-476
-
-
Warr, W.A.1
Short, A.2
-
3
-
-
84888584793
-
Algorithm for Reaction Classification
-
Kraut, H.; Eiblmaier, J.; Grethe, G.; Low, P.; Matuszczyk, H.; Saller, H. Algorithm for Reaction Classification. J. Chem. Inf. Model. 2013, 53 (11), 2884-2895.
-
(2013)
J. Chem. Inf. Model.
, vol.53
, Issue.11
, pp. 2884-2895
-
-
Kraut, H.1
Eiblmaier, J.2
Grethe, G.3
Low, P.4
Matuszczyk, H.5
Saller, H.6
-
4
-
-
84921729052
-
-
(accessed January 2015)
-
RSC's RXNO Ontology: http://www.rsc.org/ontologies/RXNO/index.asp (accessed January 2015).
-
RSC's RXNO Ontology
-
-
-
7
-
-
84886290382
-
Automatic reaction mapping and reaction center detection
-
Chen, W. L.; Chen, D. Z.; Taylor, K. T. Automatic reaction mapping and reaction center detection. Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2013, 3 (6), 560-593.
-
(2013)
Wiley Interdiscip. Rev.: Comput. Mol. Sci.
, vol.3
, Issue.6
, pp. 560-593
-
-
Chen, W.L.1
Chen, D.Z.2
Taylor, K.T.3
-
8
-
-
0000274551
-
Building and refining a knowledge base for synthetic organic chemistry via the methodology of inductive and deductive machine learning
-
Gelernter, H.; Rose, J. R.; Chen, C. Building and refining a knowledge base for synthetic organic chemistry via the methodology of inductive and deductive machine learning. J. Chem. Inf. Comput. Sci. 1990, 30 (4), 492-504.
-
(1990)
J. Chem. Inf. Comput. Sci.
, vol.30
, Issue.4
, pp. 492-504
-
-
Gelernter, H.1
Rose, J.R.2
Chen, C.3
-
9
-
-
0030881321
-
Classification of organic reactions using similarity
-
Sello, G.; Termini, M. Classification of organic reactions using similarity. Tetrahedron 1997, 53 (41), 14085-14106.
-
(1997)
Tetrahedron
, vol.53
, Issue.41
, pp. 14085-14106
-
-
Sello, G.1
Termini, M.2
-
10
-
-
84888628910
-
Analysis of Reaction Information
-
Wiley-VCH Verlag: Weinheim, Germany
-
Grethe, G. Analysis of Reaction Information. In Handbook of Chemoinformatics; Wiley-VCH Verlag: Weinheim, Germany, 2003; pp 1407-1427.
-
(2003)
Handbook of Chemoinformatics
, pp. 1407-1427
-
-
Grethe, G.1
-
11
-
-
84864201010
-
Mining electronic laboratory notebooks: Analysis, retrosynthesis, and reaction based enumeration
-
Christ, C. D.; Zentgraf, M.; Kriegl, J. M. Mining electronic laboratory notebooks: analysis, retrosynthesis, and reaction based enumeration. J. Chem. Inf. Model. 2012, 52 (7), 1745-1756.
-
(2012)
J. Chem. Inf. Model.
, vol.52
, Issue.7
, pp. 1745-1756
-
-
Christ, C.D.1
Zentgraf, M.2
Kriegl, J.M.3
-
12
-
-
84921788030
-
-
(accessed October 17, 2014)
-
Daylight Reaction Fingerprint. http://www.daylight.com/dayhtml/doc/theory/theory.finger.html (accessed October 17, 2014).
-
Daylight Reaction Fingerprint
-
-
-
13
-
-
84905564623
-
Methods for Classifying and Searching Chemical Reactions
-
U.S. Patent
-
Broughton, H. B.; Hunt, P. A.; MacKey, M. D. Methods for Classifying and Searching Chemical Reactions. U.S. Patent 2003/0182094 A1, 2003.
-
(2003)
-
-
Broughton, H.B.1
Hunt, P.A.2
MacKey, M.D.3
-
14
-
-
47649092672
-
SyGMa: Combining Expert Knowledge and Empirical Scoring in the Prediction of Metabolites
-
Ridder, L.; Wagener, M. SyGMa: Combining Expert Knowledge and Empirical Scoring in the Prediction of Metabolites. ChemMed-Chem. 2008, 3, 821-832.
-
(2008)
ChemMed-Chem.
, vol.3
, pp. 821-832
-
-
Ridder, L.1
Wagener, M.2
-
15
-
-
66249098082
-
Knowledge-Based Approach to de NovoDesign Using Reaction Vectors
-
Patel, H.; Bodkin, M. J.; Chen, B.; Gillet, V. J. Knowledge-Based Approach to de NovoDesign Using Reaction Vectors. J. Chem. Inf. Model. 2009, 49, 1163-1184.
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1163-1184
-
-
Patel, H.1
Bodkin, M.J.2
Chen, B.3
Gillet, V.J.4
-
16
-
-
33244456816
-
Molecular transformations as a way of finding and exploiting consistent local QSAR
-
Sheridan, R. P.; Hunt, P.; Culberson, J. C. Molecular transformations as a way of finding and exploiting consistent local QSAR. J. Chem. Inf. Model. 2006, 46, 180-192.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 180-192
-
-
Sheridan, R.P.1
Hunt, P.2
Culberson, J.C.3
-
17
-
-
54949108677
-
PubChem: Integrated Platform of Small Molecules and Biological Activities
-
American Chemical Society: Washington, DC
-
Bolton, E.; Wang, Y.; Thiessen, P. A.; Bryant, S. H. PubChem: Integrated Platform of Small Molecules and Biological Activities. In Annual Reports in Computational Chemistry; Vol. 4; American Chemical Society: Washington, DC, 2008.
-
(2008)
Annual Reports in Computational Chemistry
, vol.4
-
-
Bolton, E.1
Wang, Y.2
Thiessen, P.A.3
Bryant, S.H.4
-
18
-
-
0017411710
-
The Protein Data Bank: A Computer-based Archival File For Macromolecular Structures
-
Bernstein, F. C.; Koetzle, T. F.; Williams, G. J.; Meyer, E. E., Jr.; Brice, M. D.; Rodgers, J. R.; Kennard, O.; Shimanouchi, T.; Tasumi, M. The Protein Data Bank: A Computer-based Archival File For Macromolecular Structures. J. Mol. Biol. 1977, 112, 535.
-
(1977)
J. Mol. Biol.
, vol.112
, pp. 535
-
-
Bernstein, F.C.1
Koetzle, T.F.2
Williams, G.J.3
Meyer, E.E.4
Brice, M.D.5
Rodgers, J.R.6
Kennard, O.7
Shimanouchi, T.8
Tasumi, M.9
-
19
-
-
84862192766
-
ChEMBL: A large-scale bioactivity database for drug discovery
-
Gaulton, A.; Bellis, L. J.; Bento, A. P.; Chambers, J.; Davies, M.; Hersey, A.; Light, Y.; McGlinchey, S.; Michalovich, D.; Al-Lazikani, B.; Overington, J. P. ChEMBL: A large-scale bioactivity database for drug discovery. Nucleic Acids Res. 2012, 40, D1100-D1107.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1100-D1107
-
-
Gaulton, A.1
Bellis, L.J.2
Bento, A.P.3
Chambers, J.4
Davies, M.5
Hersey, A.6
Light, Y.7
McGlinchey, S.8
Michalovich, D.9
Al-Lazikani, B.10
Overington, J.P.11
-
20
-
-
0000777061
-
CASREACT: More than a million reactions
-
Blake, J. E.; Dana, R. C. CASREACT: More than a million reactions. J. Chem. Inf. Comput. Sci. 1990, 30 (4), 394-399.
-
(1990)
J. Chem. Inf. Comput. Sci.
, vol.30
, Issue.4
, pp. 394-399
-
-
Blake, J.E.1
Dana, R.C.2
-
21
-
-
84921759589
-
-
(accessed October 17, 2014)
-
Reaxys Database. http://www.elsevier.com/online-tools/reaxys (accessed October 17, 2014).
-
Reaxys Database
-
-
-
22
-
-
84921723933
-
-
(accessed October 17, 2014)
-
SPRESI Database. http://infochem.de/products/databases/spresi.shtml (accessed October 17, 2014).
-
SPRESI Database
-
-
-
24
-
-
84921758440
-
-
(accessed October 17, 2014)
-
Webreactions Database. http://www.openmolecules.org/webreactions/index.html (accessed October 17, 2014).
-
Webreactions Database
-
-
-
26
-
-
84921763470
-
-
Patent Data: (accessed on October 17, 2014)
-
Patent Data: http://nextmovesoftware.com/blog/2014/02/27/ unleashing-over-a-million-reactions-into-the-wild/,https://bitbucket.org/dan2097/patent-reaction-extraction/downloads (accessed on October 17, 2014).
-
-
-
-
27
-
-
33745079610
-
Analysis of the Reactions Used for the Preparation of Drug Candidate Molecules
-
Carey, J. S.; Laffan, D.; Thomson, C.; Williams, M. T. Analysis of the Reactions Used for the Preparation of Drug Candidate Molecules. Org. Biomol. Chem. 2006, 4, 2337-2347.
-
(2006)
Org. Biomol. Chem.
, vol.4
, pp. 2337-2347
-
-
Carey, J.S.1
Laffan, D.2
Thomson, C.3
Williams, M.T.4
-
28
-
-
79957698619
-
The Medicinal Chemist's Toolbox: An Analysis of Reactions Used in the Pursuit of Drug Candidates
-
Roughley, S. D.; Jordan, A. M. The Medicinal Chemist's Toolbox: An Analysis of Reactions Used in the Pursuit of Drug Candidates. J. Med. Chem. 2011, 54 (10), 3451-3479.
-
(2011)
J. Med. Chem.
, vol.54
, Issue.10
, pp. 3451-3479
-
-
Roughley, S.D.1
Jordan, A.M.2
-
29
-
-
84921778553
-
-
(accessed October 17, 2014)
-
NextMove Software. www.nextmovesoftware.com (accessed October 17, 2014).
-
NextMove Software
-
-
-
30
-
-
84858909192
-
-
(accessed October 17, 2014)
-
Indigo Software. http://ggasoftware.com/opensource/indigo/ (accessed October 17, 2014).
-
Indigo Software
-
-
-
32
-
-
80555140075
-
Scikit-learn: Machine Learning in Python
-
Pedregosa, F.; Varoquaux, G.; Gramfort, A.; Michel, V.; Thirion, B.; Grisel, O.; Blondel, M.; Prettenhofer, P.; Weiss, R.; Dubourg, V.; Vanderplas, J.; Passos, A.; Cournapeau, D.; Brucher, M.; Perrot, M.; et al. Scikit-learn: Machine Learning in Python. J. Mach. Learn. Res. 2011, 12, 2825-2830.
-
(2011)
J. Mach. Learn. Res.
, vol.12
, pp. 2825-2830
-
-
Pedregosa, F.1
Varoquaux, G.2
Gramfort, A.3
Michel, V.4
Thirion, B.5
Grisel, O.6
Blondel, M.7
Prettenhofer, P.8
Weiss, R.9
Dubourg, V.10
Vanderplas, J.11
Passos, A.12
Cournapeau, D.13
Brucher, M.14
Perrot, M.15
-
33
-
-
34247481878
-
IPython: A System for Interactive Scientific Computing
-
(accessed January 2015)
-
Pérez, F.; Granger, B. E. IPython: A System for Interactive Scientific Computing, Comp. Sci. Eng. 2007, 9 (3), 21-29. URL: http://ipython.org (accessed January 2015).
-
(2007)
Comp. Sci. Eng.
, vol.9
, Issue.3
, pp. 21-29
-
-
Pérez, F.1
Granger, B.E.2
-
34
-
-
0023965741
-
SMILES, A Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules
-
Weininger, D. SMILES, A Chemical Language and Information System. 1. Introduction to Methodology and Encoding Rules. J. Chem. Inf. Model. 1988, 28 (1), 31-36.
-
(1988)
J. Chem. Inf. Model.
, vol.28
, Issue.1
, pp. 31-36
-
-
Weininger, D.1
-
35
-
-
33845379303
-
Atom Pairs As Molecular Features in Structure-Activity Studies: Definition and Applications
-
Carhart, R. E.; Smith, D. H.; Venkataraghavan, R. Atom Pairs As Molecular Features in Structure-Activity Studies: Definition and Applications. J. Chem. Inf. Comput. Sci. 1985, 25, 64-73.
-
(1985)
J. Chem. Inf. Comput. Sci.
, vol.25
, pp. 64-73
-
-
Carhart, R.E.1
Smith, D.H.2
Venkataraghavan, R.3
-
36
-
-
77952772341
-
Extended-Connectivity Fingerprints
-
Rogers, D.; Hahn, M. Extended-Connectivity Fingerprints. J. Chem. Inf. Model. 2010, 50, 742-754.
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 742-754
-
-
Rogers, D.1
Hahn, M.2
-
37
-
-
0003076470
-
Topological Torsion: A New Molecular Descriptor for SAR Applications. Comparison with Other Descriptors
-
Nilakantan, R.; Baumann, N.; Dixon, J. S.; Venkataraghavan, R. Topological Torsion: A New Molecular Descriptor for SAR Applications. Comparison with Other Descriptors. J. Chem. Inf. Comput. Sci. 1987, 27, 82-85.
-
(1987)
J. Chem. Inf. Comput. Sci.
, vol.27
, pp. 82-85
-
-
Nilakantan, R.1
Baumann, N.2
Dixon, J.S.3
Venkataraghavan, R.4
-
38
-
-
0035478854
-
Random Forests
-
Breiman, L. Random Forests. Machine Learning 2001, 45 (1), 5-32.
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
39
-
-
0032671931
-
Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data Sets
-
Butina, D. Unsupervised Data Base Clustering Based on Daylight's Fingerprint and Tanimoto Similarity: A Fast and Automated Way To Cluster Small and Large Data Sets. J. Chem. Inf. Comput. Sci. 1999, 39, 747-750.
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 747-750
-
-
Butina, D.1
-
40
-
-
0000250265
-
Measures of the Amount of Ecologic Association Between Species
-
Dice, L. R. Measures of the Amount of Ecologic Association Between Species. Ecology 1945, 26, 297-302.
-
(1945)
Ecology
, vol.26
, pp. 297-302
-
-
Dice, L.R.1
|