-
1
-
-
29144522317
-
Development and evaluation of genomeprobing microarrays for monitoring lactic acid bacteria
-
Bae, J. W., Rhee, S. K., Park, J. R., Chung, W. H., Nam, Y. D., Lee, I., Kim, H. & Park, Y. H. (2005). Development and evaluation of genomeprobing microarrays for monitoring lactic acid bacteria. Appl Environ Microbiol 71, 8825-8835.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8825-8835
-
-
Bae, J.W.1
Rhee, S.K.2
Park, J.R.3
Chung, W.H.4
Nam, Y.D.5
Lee, I.6
Kim, H.7
Park, Y.H.8
-
3
-
-
84857959724
-
Family I. Flavobacteriaceae Reichenbach 1992
-
2nd edn, Edited by N. R. Krieg, W. Ludwig, W. B. Whitman, B. P. Hedlund, B. J. Paster, J. T. Staley, N. L. Ward, D. R. Brown & A. Parte. New York: Springer
-
Bernardet, J.-F. (2011). Family I. Flavobacteriaceae Reichenbach 1992. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 4, pp. 106-111. Edited by N. R. Krieg, W. Ludwig, W. B. Whitman, B. P. Hedlund, B. J. Paster, J. T. Staley, N. L. Ward, D. R. Brown & A. Parte. New York: Springer.
-
(2011)
Bergey's Manual of Systematic Bacteriology
, vol.4
, pp. 106-111
-
-
Bernardet, J.-F.1
-
4
-
-
0035989637
-
Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family
-
Bernardet, J.-F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1049-1070
-
-
Bernardet, J.-F.1
Nakagawa, Y.2
Holmes, B.3
-
5
-
-
55149102617
-
Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods
-
Chang, H. W., Nam, Y. D., Jung, M. Y., Kim, K. H., Roh, S. W., Kim, M. S., Jeon, C. O., Yoon, J. H. & Bae, J. W. (2008). Statistical superiority of genome-probing microarrays as genomic DNA-DNA hybridization in revealing the bacterial phylogenetic relationship compared to conventional methods. J Microbiol Methods 75, 523-530.
-
(2008)
J Microbiol Methods
, vol.75
, pp. 523-530
-
-
Chang, H.W.1
Nam, Y.D.2
Jung, M.Y.3
Kim, K.H.4
Roh, S.W.5
Kim, M.S.6
Jeon, C.O.7
Yoon, J.H.8
Bae, J.W.9
-
6
-
-
0019490792
-
Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication
-
Collins, M. D. & Jones, D. (1981a). Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implication. Microbiol Rev 45, 316-354.
-
(1981)
Microbiol Rev
, vol.45
, pp. 316-354
-
-
Collins, M.D.1
Jones, D.2
-
7
-
-
0019860493
-
A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thinlayer chromatography and high performance liquid chromatography
-
Collins, M. D. & Jones, D. (1981b). A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thinlayer chromatography and high performance liquid chromatography. J Appl Bacteriol 51, 129-134.
-
(1981)
J Appl Bacteriol
, vol.51
, pp. 129-134
-
-
Collins, M.D.1
Jones, D.2
-
8
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
9
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
-
(1971)
Syst Zool
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
10
-
-
0036862191
-
A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature
-
Gonzalez, J. M. & Saiz-Jimenez, C. (2002). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ Microbiol 4, 770-773.
-
(2002)
Environ Microbiol
, vol.4
, pp. 770-773
-
-
Gonzalez, J.M.1
Saiz-Jimenez, C.2
-
11
-
-
0031930599
-
Milk-Tween agar, a semiselective medium for isolation and differentiation of Pseudomonas syringae pv. syringae, Pseudomonas syringae pv. phaseolicola and Xanthomonas axonopodis pv. phaseoli
-
Goszczynska, T. & Serfontein, J. J. (1998). Milk-Tween agar, a semiselective medium for isolation and differentiation of Pseudomonas syringae pv. syringae, Pseudomonas syringae pv. phaseolicola and Xanthomonas axonopodis pv. phaseoli. J Microbiol Methods 32, 65-72.
-
(1998)
J Microbiol Methods
, vol.32
, pp. 65-72
-
-
Goszczynska, T.1
Serfontein, J.J.2
-
12
-
-
84887045009
-
Shimia haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai
-
Hyun, D. W., Kim, M. S., Shin, N. R., Kim, J. Y., Kim, P. S., Whon, T. W., Yun, J. H. & Bae, J. W. (2013a). Shimia haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 63, 4248-4253.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 4248-4253
-
-
Hyun, D.W.1
Kim, M.S.2
Shin, N.R.3
Kim, J.Y.4
Kim, P.S.5
Whon, T.W.6
Yun, J.H.7
Bae, J.W.8
-
13
-
-
84889607669
-
Pseudoruegeria haliotis sp. nov., isolated from the gut of the abalone Haliotis discus hannai
-
Hyun, D. W., Shin, N. R., Kim, M. S., Kim, P. S., Kim, J. Y., Whon, T. W. & Bae, J. W. (2013b). Pseudoruegeria haliotis sp. nov., isolated from the gut of the abalone Haliotis discus hannai. Int J Syst Evol Microbiol 63, 4626-4632.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 4626-4632
-
-
Hyun, D.W.1
Shin, N.R.2
Kim, M.S.3
Kim, P.S.4
Kim, J.Y.5
Whon, T.W.6
Bae, J.W.7
-
14
-
-
84891899560
-
Cloacibacterium haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai
-
Hyun, D. W., Shin, N. R., Kim, M. S., Kim, J. Y., Kim, P. S., Oh, S. J., Whon, T. W. & Bae, J. W. (2014a). Cloacibacterium haliotis sp. nov., isolated from the gut of an abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 64, 72-77.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 72-77
-
-
Hyun, D.W.1
Shin, N.R.2
Kim, M.S.3
Kim, J.Y.4
Kim, P.S.5
Oh, S.J.6
Whon, T.W.7
Bae, J.W.8
-
15
-
-
84893449048
-
Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai
-
Hyun, D. W., Shin, N. R., Kim, M. S., Kim, P. S., Kim, J. Y., Whon, T. W. & Bae, J. W. (2014b). Actinomyces haliotis sp. nov., a bacterium isolated from the gut of an abalone, Haliotis discus hannai. Int J Syst Evol Microbiol 64, 456-461.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 456-461
-
-
Hyun, D.W.1
Shin, N.R.2
Kim, M.S.3
Kim, P.S.4
Kim, J.Y.5
Whon, T.W.6
Bae, J.W.7
-
16
-
-
83955161227
-
LC-MS method for screening unknown microbial carotenoids and isoprenoid quinones
-
Kaiser, P., Geyer, R., Surmann, P. & Fuhrmann, H. (2012). LC-MS method for screening unknown microbial carotenoids and isoprenoid quinones. J Microbiol Methods 88, 28-34.
-
(2012)
J Microbiol Methods
, vol.88
, pp. 28-34
-
-
Kaiser, P.1
Geyer, R.2
Surmann, P.3
Fuhrmann, H.4
-
17
-
-
40449129856
-
Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment
-
Kim, J. H., Kim, K. Y., Hahm, Y. T., Kim, B. S., Chun, J. & Cha, C. J. (2008). Actibacter sediminis gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from tidal flat sediment. Int J Syst Evol Microbiol 58, 139-143.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 139-143
-
-
Kim, J.H.1
Kim, K.Y.2
Hahm, Y.T.3
Kim, B.S.4
Chun, J.5
Cha, C.J.6
-
18
-
-
84863230041
-
Introducing EzTaxon-e: A prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species
-
Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & et al. (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
-
(2012)
Int J Syst Evol Microbiol
, vol.62
, pp. 716-721
-
-
Kim, O.S.1
Cho, Y.J.2
Lee, K.3
Yoon, S.H.4
Kim, M.5
Na, H.6
Park, S.C.7
Jeon, Y.S.8
Lee, J.H.9
-
19
-
-
0001857117
-
16S/23S rRNA sequencing
-
Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley
-
Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
45749087791
-
Chitin hydrolysis by Listeria spp., including L. monocytogenes
-
Leisner, J. J., Larsen, M. H., Jørgensen, R. L., Brøndsted, L., Thomsen, L. E. & Ingmer, H. (2008). Chitin hydrolysis by Listeria spp., including L. monocytogenes. Appl Environ Microbiol 74, 3823-3830.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 3823-3830
-
-
Leisner, J.J.1
Larsen, M.H.2
Jørgensen, R.L.3
Brøndsted, L.4
Thomsen, L.E.5
Ingmer, H.6
-
21
-
-
15444369528
-
16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"
-
Loy, A., Schulz, C., Lücker, S., Schöpfer-Wendels, A., Stoecker, K., Baranyi, C., Lehner, A. & Wagner, M. (2005). 16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales". Appl Environ Microbiol 71, 1373-1386.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 1373-1386
-
-
Loy, A.1
Schulz, C.2
Lücker, S.3
Schöpfer-Wendels, A.4
Stoecker, K.5
Baranyi, C.6
Lehner, A.7
Wagner, M.8
-
23
-
-
0027121460
-
DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities
-
Rochelle, P. A., Fry, J. C., Parkes, R. J. & Weightman, A. J. (1992). DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities. FEMS Microbiol Lett 100, 59-65.
-
(1992)
FEMS Microbiol Lett
, vol.100
, pp. 59-65
-
-
Rochelle, P.A.1
Fry, J.C.2
Parkes, R.J.3
Weightman, A.J.4
-
24
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
-
(1987)
Mol Biol Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
26
-
-
85011850921
-
Mass mortality of Japanese abalone Haliotis discus hannai caused by Vibrio harveyi infection
-
Sawabe, T., Inoue, S., Fukui, Y., Yoshie, K., Nishihara, Y. & Miura, H. (2007). Mass mortality of Japanese abalone Haliotis discus hannai caused by Vibrio harveyi infection. Microbes Environ 22, 300-308.
-
(2007)
Microbes Environ
, vol.22
, pp. 300-308
-
-
Sawabe, T.1
Inoue, S.2
Fukui, Y.3
Yoshie, K.4
Nishihara, Y.5
Miura, H.6
-
27
-
-
0004469194
-
Analysis of pigments: Carotenoids and related polyenes
-
Edited by M. Goodfellow & A. G. O'Donnell. New York: Wiley
-
Schmidt, K., Connor, A. & Britton, G. (1994). Analysis of pigments: carotenoids and related polyenes. In Chemical Methods in Prokaryotic Systematics, pp. 403-461. Edited by M. Goodfellow & A. G. O'Donnell. New York: Wiley.
-
(1994)
Chemical Methods in Prokaryotic Systematics
, pp. 403-461
-
-
Schmidt, K.1
Connor, A.2
Britton, G.3
-
28
-
-
84890330527
-
MEGA6: Molecular evolutionary genetics analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013). MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30, 2725-2729.
-
(2013)
Mol Biol Evol
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
-
29
-
-
0242457303
-
Gut microflora of abalone Haliotis discus hannai in culture changes coincident with a change in diet
-
Tanaka, R., Sugimura, I., Sawabe, T., Yoshimizu, M. & Ezura, Y. (2003). Gut microflora of abalone Haliotis discus hannai in culture changes coincident with a change in diet. Fish Sci 69, 951-958.
-
(2003)
Fish Sci
, vol.69
, pp. 951-958
-
-
Tanaka, R.1
Sugimura, I.2
Sawabe, T.3
Yoshimizu, M.4
Ezura, Y.5
-
30
-
-
0020032328
-
Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen
-
Teather, R. M. & Wood, P. J. (1982). Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl Environ Microbiol 43, 777-780.
-
(1982)
Appl Environ Microbiol
, vol.43
, pp. 777-780
-
-
Teather, R.M.1
Wood, P.J.2
-
31
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
32
-
-
0025098748
-
Lipid composition of Halobacterium lacusprofundi
-
Tindall, B. J. (1990). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
-
(1990)
FEMS Microbiol Lett
, vol.66
, pp. 199-202
-
-
Tindall, B.J.1
-
33
-
-
6044265186
-
The use of semi-solid agar for the detection of bacterial motility
-
Tittsler, R. P. & Sandholzer, L. A. (1936). The use of semi-solid agar for the detection of bacterial motility. J Bacteriol 31, 575-580.
-
(1936)
J Bacteriol
, vol.31
, pp. 575-580
-
-
Tittsler, R.P.1
Sandholzer, L.A.2
-
34
-
-
0000770675
-
International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & et al. (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
Moore, L.H.7
Moore, W.E.C.8
Murray, R.G.E.9
-
35
-
-
0034112461
-
Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China
-
Xin, H., Itoh, T., Zhou, P., Suzuki, K., Kamekura, M. & Nakase, T. (2000). Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 50, 1297-1303.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 1297-1303
-
-
Xin, H.1
Itoh, T.2
Zhou, P.3
Suzuki, K.4
Kamekura, M.5
Nakase, T.6
|