Genome-wide analysis of DNA methylation in UVB- and DMBA/TPA-induced mouse skin cancer models

Life Sciences

Volumn 113, Issue 1-2, 2014, Pages 45-54

  Yang, Anne Yuqing ^a   Lee, Jong Hun ^a,c   Shu, Limin ^a   Zhang, Chengyue ^a   Su, Zheng Yuan ^a   Lu, Yaoping ^a   Huang, Mou Tuan ^a   Ramirez, Christina ^a,b   Pung, Douglas ^a   Huang, Ying ^a   Verzi, Michael ^b   Hart, Ronald P ^b   Kong, Ah Ng Tony ^a  

^a RUTGERS UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c CHA University   (South Korea)

Author keywords

DMBA TPA; DNA methylation; Epigenetics; MeDIP Seq; UVB

Indexed keywords

12 O TETRADECANOYLPHORBOL 1,3 ACETATE; 7,12 DIMETHYLBENZ[A]ANTHRACENE; CYCLIC AMP DEPENDENT PROTEIN KINASE; INTERLEUKIN 6; PHORBOL MYRISTATE; UNCLASSIFIED DRUG; 12-O-TETRADECANOYLPHORBOL-1,3-ACETATE; CARCINOGEN; PHORBOL 13 ACETATE 12 MYRISTATE;

ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CONTROLLED STUDY; DNA METHYLATION; FEMALE; GENE EXPRESSION; GENE INTERACTION; GENETIC ASSOCIATION; IMMUNOPRECIPITATION; MOUSE; NEXT GENERATION SEQUENCING; NONHUMAN; PROTEIN EXPRESSION; SKIN CANCER; SKIN CARCINOGENESIS; TUMOR GROWTH; TUMOR PROMOTION; ULTRAVIOLET B RADIATION; XENOBIOTIC METABOLISM; ANALOGS AND DERIVATIVES; ANIMAL; CHEMICALLY INDUCED; CHEMISTRY; CPG ISLAND; DISEASE MODEL; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETIC EPIGENESIS; GENETICS; GENOME; INFLAMMATION; SIGNAL TRANSDUCTION; SKIN TUMOR; ULTRAVIOLET RADIATION;

MUS;

9,10-DIMETHYL-1,2-BENZANTHRACENE; ANIMALS; CARCINOGENS; CPG ISLANDS; DISEASE MODELS, ANIMAL; DNA METHYLATION; EPIGENESIS, GENETIC; FEMALE; GENE EXPRESSION REGULATION, NEOPLASTIC; GENOME; INFLAMMATION; MICE; SEQUENCE ANALYSIS, DNA; SIGNAL TRANSDUCTION; SKIN NEOPLASMS; TETRADECANOYLPHORBOL ACETATE; ULTRAVIOLET RAYS;

EID: 84921669913     PISSN: 00243205     EISSN: 18790631     Source Type: Journal    
DOI: 10.1016/j.lfs.2014.07.031     Document Type: Article

References (35)

1. E. Ballestar, and M. Esteller Epigenetic gene regulation in cancer Adv Genet 61 2008 247 267
2. S.B. Baylin, S.A. Belinsky, and J.G. Herman Aberrant methylation of gene promoters in cancer - concepts, misconcepts, and promise J Natl Cancer Inst 92 18 2000 1460 1461
3. Cancer Genome Atlas, N Comprehensive molecular characterization of human colon and rectal cancer Nature 487 7407 2012 330 337
4. K.S. Chan, S. Sano, K. Kataoka, E. Abel, S. Carbajal, and L. Beltran Forced expression of a constitutively active form of Stat3 in mouse epidermis enhances malignant progression of skin tumors induced by two-stage carcinogenesis Oncogene 27 8 2008 1087 1094
5. G. Chang, S. Xu, R. Dhir, U. Chandran, D.S. O'Keefe, and N.M. Greenberg Hypoexpression and epigenetic regulation of candidate tumor suppressor gene CADM-2 in human prostate cancer Clin Cancer Res 16 22 2010 5390 5401
6. W.Y. Chen, X. Zeng, M.G. Carter, C.N. Morrell, R.W. Chiu Yen, and Esteller Heterozygous disruption of Hic1 predisposes mice to a gender-dependent spectrum of malignant tumors Nat Genet 33 2 2003 197 202
7. M. Esteller Epigenetics in cancer N Engl J Med 358 11 2008 1148 1159
8. J.A. Gasche, J. Hoffmann, C.R. Boland, and A. Goel Interleukin-6 promotes tumorigenesis by altering DNA methylation in oral cancer cells Int J Cancer 129 5 2011 1053 1063
9. W. He, X. Li, S. Xu, J. Ai, Y. Gong, and J.L. Gregg Aberrant methylation and loss of CADM2 tumor suppressor expression is associated with human renal cell carcinoma tumor progression Biochem Biophys Res Commun 435 4 2013 526 532
10. T. Hocker, and H. Tsao Ultraviolet radiation and melanoma: a systematic review and analysis of reported sequence variants Hum Mutat 28 6 2007 578 588
11. R. Jaenisch, and A. Bird Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals Nat Genet 33 2003 245 254 (Suppl.)
12. C. Jhappan, F.P. Noonan, and G. Merlino Ultraviolet radiation and cutaneous malignant melanoma Oncogene 22 20 2003 3099 3112
13. H.E. Kanavy, and M.R. Gerstenblith Ultraviolet radiation and melanoma Semin Cutan Med Surg 30 4 2011 222 228
14. Y. Koga, M. Pelizzola, E. Cheng, M. Krauthammer, M. Sznol, and S. Ariyan Genome-wide screen of promoter methylation identifies novel markers in melanoma Genome Res 19 8 2009 1462 1470
15. P.W. Laird, and R. Jaenisch The role of DNA methylation in cancer genetic and epigenetics Annu Rev Genet 30 1996 441 464
16. U. Leiter, and C. Garbe Epidemiology of melanoma and nonmelanoma skin cancer - the role of sunlight Adv Exp Med Biol 624 2008 89 103
17. J. Moan, A.C. Porojnicu, and A. Dahlback Ultraviolet radiation and malignant melanoma Adv Exp Med Biol 624 2008 104 116
18. R.L. Momparler, and V. Bovenzi DNA methylation and cancer J Cell Physiol 183 2 2000 145 154
19. H. Mukhtar, and C.A. Elmets Photocarcinogenesis: mechanisms, models and human health implications Photochem Photobiol 63 4 1996 356 357
20. V. Nandakumar, M. Vaid, T.O. Tollefsbol, and S.K. Katiyar Aberrant DNA hypermethylation patterns lead to transcriptional silencing of tumor suppressor genes in UVB-exposed skin and UVB-induced skin tumors of mice Carcinogenesis 32 4 2011 597 604
21. C.J. Nile, R.C. Read, M. Akil, G.W. Duff, and A.G. Wilson Methylation status of a single CpG site in the IL6 promoter is related to IL6 messenger RNA levels and rheumatoid arthritis Arthritis Rheum 58 9 2008 2686 2693
22. K. Nishijo, Q.R. Chen, L. Zhang, A.T. McCleish, A. Rodriguez, and M.J. Cho Credentialing a preclinical mouse model of alveolar rhabdomyosarcoma Cancer Res 69 7 2009 2902 2911
23. R. Saab, C. Rodriguez-Galindo, K. Matmati, J.E. Rehg, S.H. Baumer, and J.D. Khoury p18Ink4c and p53 Act as tumor suppressors in cyclin D1-driven primitive neuroectodermal tumor Cancer Res 69 2 2009 440 448
24. N. Sengupta, C. Yau, A. Sakthianandeswaren, D. Mouradov, P. Gibbs, and N. Suraweera Analysis of colorectal cancers in British Bangladeshi identifies early onset, frequent mucinous histotype and a high prevalence of RBFOX1 deletion Mol Cancer 12 2013 1
25. C. Suiqing, Z. Min, and C. Lirong Overexpression of phosphorylated-STAT3 correlated with the invasion and metastasis of cutaneous squamous cell carcinoma J Dermatol 32 5 2005 354 360
26. X. Tekpli, N.E. Landvik, K.H. Anmarkud, V. Skaug, A. Haugen, and S. Zienolddiny DNA methylation at promoter regions of interleukin 1B, interleukin 6, and interleukin 8 in non-small cell lung cancer Cancer Immunol Immunother 62 2 2013 337 345
27. S. Tommasi, R. Dammann, Z. Zhang, Y. Wang, L. Liu, and W.M. Tsark Tumor susceptibility of Rassf1a knockout mice Cancer Res 65 1 2005 92 98
28. C. Trapnell, A. Roberts, A. Goff, G. Pertea, D. Kim, and D.R. Kelley Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks Nat Protoc 7 3 2012 562 578
29. V.A. Tron, D. Rosenthal, and D.N. Sauder Epidermal interleukin-1 is increased in cutaneous T-cell lymphoma J Invest Dermatol 90 3 1988 378 381
30. M. Vaid, S.D. Sharma, and S.K. Katiyar Honokiol, a phytochemical from the Magnolia plant, inhibits photocarcinogenesis by targeting UVB-induced inflammatory mediators and cell cycle regulators: development of topical formulation Carcinogenesis 31 11 2010 2004 2011
31. J.F. Wilkey, G. Buchberger, K. Saucier, S.M. Patel, E. Eisenberg, and H. Nakagawa Cyclin D1 overexpression increases susceptibility to 4-nitroquinoline-1-oxide-induced dysplasia and neoplasia in murine squamous oral epithelium Mol Carcinog 48 9 2009 853 861
32. S. Yang, H.L. Yan, Q.F. Tao, S.X. Yuan, G.N. Tang, and Y. Yang Low CADM2 expression predicts high recurrence risk of hepatocellular carcinoma patients after hepatectomy J Cancer Res Clin Oncol 140 1 2014 109 116
33. H. Zheng, H. Ying, H. Yan, A.C. Kimmelman, D.J. Hiller, and A.J. Chen p53 and Pten control neural and glioma stem/progenitor cell renewal and differentiation Nature 455 7216 2008 1129 1133
34. L.J. Zhu, C. Gazin, N.D. Lawson, H. Pages, S.M. Lin, and D.S. Lapointe ChIPpeakAnno: a bioconductor package to annotate ChIP-seq and ChIP-chip data BMC Bioinformatics 11 2010 237
35. J.M. Zingg, and P.A. Jones Genetic and epigenetic aspects of DNA methylation on genome expression, evolution, mutation and carcinogenesis Carcinogenesis 18 5 1997 869 882