A phosphohistidine proteomics strategy based on elucidation of a unique gas-phase phosphopeptide fragmentation mechanism

Journal of the American Chemical Society

Volumn 136, Issue 37, 2014, Pages 12899-12911

  Oslund, Rob C ^a   Kee, Jung Min ^a,d   Couvillon, Anthony D ^b   Bhatia, Vivek N ^c   Perlman, David H ^a   Muir, Tom W ^a  

^a PRINCETON UNIVERSITY   (United States)

^b CELL SIGNALING TECHNOLOGY   (United States)

^c HEARTFLOW INC   (United States)

^d Ulsan National Institute of Science and Technology   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOINFORMATICS; CARBOXYLATION; CELL SIGNALING; ENZYMES; ESCHERICHIA COLI; GASES; PEPTIDES; PHOSPHORYLATION;

ALCOHOL DEHYDROGENASE; CENTRAL METABOLISMS; COLLISION INDUCED DISSOCIATION; ESCHERICHIA COLI CELLS; GAS-PHASE FRAGMENTATION; PHOSPHOENOLPYRUVATES; PHOSPHOPEPTIDE FRAGMENTATIONS; POST-TRANSLATIONAL MODIFICATIONS;

PROTEOMICS;

ALCOHOL DEHYDROGENASE; ASPARTIC ACID; CARBOXYLIC ACID; GLUTAMIC ACID; GLYCEROL; HISTIDINE; MANNITOL; PHOSPHOENOLPYRUVATE SUGAR PHOSPHOTRANSFERASE; PHOSPHOPEPTIDE; PHOSPHORIC ACID; PROTEOME; PYRUVATE KINASE; ESCHERICHIA COLI PROTEIN; PEPTIDE FRAGMENT; PHOSPHOHISTIDINE;

ARTICLE; BACTERIAL CELL; CARBOXY TERMINAL SEQUENCE; CELL LYSATE; COLLISIONALLY ACTIVATED DISSOCIATION; ESCHERICHIA COLI; ISOTOPE LABELING; LIQUID CHROMATOGRAPHY; PROTEIN PHOSPHORYLATION; PROTEIN PROCESSING; PROTEOMICS; TANDEM MASS SPECTROMETRY; AMINO ACID SEQUENCE; ANALOGS AND DERIVATIVES; CHEMISTRY; MOLECULAR GENETICS; PROCEDURES;

AMINO ACID SEQUENCE; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HISTIDINE; MOLECULAR SEQUENCE DATA; PEPTIDE FRAGMENTS; PHOSPHOPEPTIDES; PROTEOMICS; TANDEM MASS SPECTROMETRY;

EID: 84921272425     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja507614f     Document Type: Article

References (37)

1. Walsh, C. T. Posttranslational Modification of Proteins: Expanding Nature's Inventory; Roberts and Company Publishers: Greenwood Village, CO, 2006.
2. Cohen, P. Nat. Rev. Drug Discovery 2002, 1, 309.
3. Dephoure, N.; Gould, K. L.; Gygi, S. P.; Kellogg, D. R. Mol. Biol. Cell 2013, 24, 535.
4. Kee, J.-M.; Muir, T. W. ACS Chem. Biol. 2012, 7, 44.
5. Attwood, P. V.; Besant, P. G.; Piggott, M. J. Amino Acids 2010, 40, 1035.
6. Besant, P. G.; Attwood, P. V.; Piggott, M. J. Curr. Protein Pept. Sci. 2009, 10, 536.
7. Boyer, P. D.; Peter, J. B.; Ebner, K. E.; Deluca, M.; Hultquist, D. E. J. Biol. Chem. 1962, 237, 3306.
8. Stock, A. M.; Robinson, V. L.; Goudreau, P. N. Annu. Rev. Biochem. 2000, 69, 183.
9. Meadow, N. D.; Fox, D. K.; Roseman, S. Annu. Rev. Biochem. 1990, 59, 497.
10. Kee, J.-M.; Villani, B.; Carpenter, L. R.; Muir, T. W. J. Am. Chem. Soc. 2010, 132, 14327.
11. Kee, J. M.; Oslund, R. C.; Perlman, D. H.; Muir, T. W. Nat. Chem. Biol. 2013, 9, 416.
12. Medzihradszky, K. F.; Phillipps, N. J.; Senderowicz, L.; Wang, P.; Turck, C. W. Protein Sci. 1997, 6, 1405.
13. Kleinnijenhuis, A. J.; Kjeldsen, F.; Kallipolitis, B.; Haselmann, K. F.; Jensen, O. N. Anal. Chem. 2007, 79, 7450.
14. Zu, X. L.; Besant, P. G.; Imhof, A.; Attwood, P. V. Amino Acids 2007, 32, 347.
15. Gonzalez Sanchez, M. B.; Lanucara, F.; Helm, M.; Eyers, C. E. Biochem. Soc. Trans. 2013, 41, 1089.
16. Boersema, P. J.; Mohammed, S.; Heck, A. J. R. J. Mass Spectrom. 2009, 44, 861.
17. DeGnore, J. P.; Qin, J. J. Am. Soc. Mass Spectrom. 1998, 9, 1175.
18. Palumbo, A. M.; Tepe, J. J.; Reid, G. E. J. Proteome Res. 2008, 7, 771.
19. Schnolzer, M.; Jedrzejewski, P.; Lehmann, W. D. Electrophoresis 1996, 17, 945.
20. Ficarro, S. B.; McCleland, M. L.; Stukenberg, P. T.; Burke, D. J.; Ross, M. M.; Shabanowitz, J.; Hunt, D. F.; White, F. M. Nat. Biotechnol. 2002, 20, 301.
21. Grimsrud, P. A.; Swaney, D. L.; Wenger, C. D.; Beauchene, N. A.; Coon, J. J. ACS Chem. Biol. 2010, 5, 105.
22. Rush, J.; Moritz, A.; Lee, K. A.; Guo, A.; Goss, V. L.; Spek, E. J.; Zhang, H.; Zha, X. M.; Polakiewicz, R. D.; Comb, M. J. Nat. Biotechnol. 2005, 23, 94.
23. Thingholm, T. E.; Jensen, O. N.; Larsen, M. R. Proteomics 2009, 9, 1451.
24. Schroeder, M. J.; Shabanowitz, J.; Schwartz, J. C.; Hunt, D. F.; Coon, J. J. Anal. Chem. 2004, 76, 3590.
25. Syka, J. E.; Coon, J. J.; Schroeder, M. J.; Shabanowitz, J.; Hunt, D. F. Proc. Natl. Acad. Sci. U. S. A. 2004, 101, 9528.
26. Farriol-Mathis, N.; Garavelli, J. S.; Boeckmann, B.; Duvaud, S.; Gasteiger, E.; Gateau, A.; Veuthey, A. L.; Bairoch, A. Proteomics 2004, 4, 1537.
27. The UniProt Consortium. Nucleic Acids Res. 2013, 41, D43.
28. Taus, T.; Kocher, T.; Pichler, P.; Paschke, C.; Schmidt, A.; Henrich, C.; Mechtler, K. J. Proteome Res. 2011, 10, 5354.
29. Schmidt, A.; Ammerer, G.; Mechtler, K. Proteomics 2013, 13, 945.
30. Gonzalez Sanchez, M. B.; Lanucara, F.; Hardman, G.; Eyers, C. E. Int. J. Mass Spectrom. 2014, 367, 28.
31. Hogema, B. M.; Arents, J. C.; Bader, R.; Eijkemans, K.; Yoshida, H.; Takahashi, H.; Aiba, H.; Postma, P. W. Mol. Microbiol. 1998, 30, 487.
32. Ward, P. S.; Thompson, C. B. Cancer Cell 2012, 21, 297.
33. Cai, S. J.; Inouye, M. J. Biol. Chem. 2002, 277, 24155.
34. Yamamoto, K.; Hirao, K.; Oshima, T.; Aiba, H.; Utsumi, R.; Ishihama, A. J. Biol. Chem. 2005, 280, 1448.
35. Postma, P. W.; Lengeler, J. W.; Jacobson, G. R. Microbiol. Rev. 1993, 57, 543.
36. Membrillo-Hernandez, J.; Echave, P.; Cabiscol, E.; Tamarit, J.; Ros, J.; Lin, E. C. J. Biol. Chem. 2000, 275, 33869.
37. Morgan, H. P.; McNae, I. W.; Nowicki, M. W.; Hannaert, V.; Michels, P. A.; Fothergill-Gilmore, L. A.; Walkinshaw, M. D. J. Biol. Chem. 2010, 285, 12892.