Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations

Journal of Plant Physiology

Volumn 176, Issue , 2015, Pages 138-146

  Jung, Chang Gyo ^a   Hwang, Sun Goo ^a   Park, Yong Chan ^a   Park, Hyeon Mi ^a   Kim, Dong Sub ^b   Park, Duck Hwan ^a   Jang, Cheol Seong ^a  

^a Kangwon National University   (South Korea)

^b Korea Atomic Energy Research Institute   (South Korea)

Author keywords

Abiotic stress; Co expression network; Germination; Leucine rich repeat receptor like kinase; Protein protein interaction

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

ARABIDOPSIS PROTEIN; PROTEIN BINDING; PROTEIN TYROSINE KINASE; PXL1 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; CELL FRACTIONATION; COLD; COMPUTER SIMULATION; ENZYME SPECIFICITY; GENE EXPRESSION REGULATION; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; HEAT; METABOLISM; PHOSPHORYLATION; PHYLOGENY; PHYSIOLOGICAL STRESS; PLANT GENE; PLANT SEED; PROTEIN TRANSPORT; SEQUENCE HOMOLOGY; SIGNAL TRANSDUCTION;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; COLD TEMPERATURE; COMPUTER SIMULATION; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GERMINATION; HOT TEMPERATURE; PHOSPHORYLATION; PHYLOGENY; PROTEIN BINDING; PROTEIN TRANSPORT; RECEPTOR PROTEIN-TYROSINE KINASES; SEEDS; SEQUENCE HOMOLOGY, AMINO ACID; SIGNAL TRANSDUCTION; STRESS, PHYSIOLOGICAL; SUBCELLULAR FRACTIONS; SUBSTRATE SPECIFICITY;

EID: 84921047210     PISSN: 01761617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jplph.2015.01.001     Document Type: Article

References (39)

1. Bartels D., Sunkar R. Drought and salt tolerance in plants. Crit Rev Plant Sci 2005, 24:23-58.
2. Chang C.Y., Lin W.D., Tu S.L. Genome-wide analysis of heat-sensitive alternative splicing in Physcomitrella patens. Plant Physiol 2014, 165:826-840.
3. Clark S.E., Williams R.W., Meyerowitz E.M. The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis. Cell 1997, 89:575-585.
4. Clough S.J., Bent A.F. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 1998, 16:735-743.
5. Clouse S.D., Goshe M.B., Huber S.C. Phosphorylation and RLK signaling. Anonymous receptor-Lke kinases in Plants to Receptor-like Kinases in Plants 2012, 227-251. Springer Berlin Heidelberg.
6. Du Z., Zhou X., Ling Y., Zhang Z., Su Z. agriGO: a GO analysis toolkit for the agricultural community. Nucleic Acids Res 2010, 38:W64-W70.
7. Fisher K., Turner S. PXY a receptor-like kinase essential for maintaining polarity during plant vascular-tissue development. Curr Biol 2007, 17:1061-1066.
8. Goodstein D.M., Shu S., Howson R., Neupane R., Hayes R.D., Fazo J., et al. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res 2012, 40:D1178-D1186.
9. Hanin M., Brini F., Ebel C., Toda Y., Takeda S., Masmoudi K. Plant dehydrins and stress tolerance: versatile proteins for complex mechanisms. Plant Signaling Behav 2011, 6:1503-1509.
10. Hara M., Shinoda Y., Kubo M., Kashima D., Takahashi I., Kato T., et al. Biochemical characterization of the Arabidopsis KS-type dehydrin protein, whose gene expression is constitutively abundant rather than stress dependent. Acta Physiol Plant 2011, 33:2103-2116.
11. Hruz T., Laule O., Szabo G., Wessendorp F., Bleuler S., Oertle L., et al. Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Adv Bioinf 2008, 2008:420747.
12. Hwang S., Kim D.S., Jang C.S. Comparative analysis of evolutionary dynamics of genes encoding leucine-rich repeat receptor-like kinase between rice and Arabidopsis. Genetica 2011, 139:1023-1032.
13. Hwang S., Kim D.S., Hwang J.E., Han A., Jang C.S. Identification of rice genes associated with cosmic-ray response via co-expression gene network analysis. Gene 2014, 541:82-91.
14. Ishiguro S., Ogasawara K., Fujino K., Sato Y., Kishima Y. Low temperature-responsive changes in the anther transcriptome's repeat sequences are indicative of stress sensitivity and pollen sterility in rice strains. Plant Physiol 2014, 164:671-682.
15. Johnson K.L., Ingram G.C. Sending the right signals: regulating receptor kinase activity. Curr Opin Plant Biol 2005, 8:648-656.
16. Jung C.G., Lim S.D., Hwang S.G., Jang C.S. Molecular characterization and concerted evolution of two genes encoding RING-C2 type proteins in rice. Gene 2012, 505:9-18.
17. Kendall S.L., Hellwege A., Marriot P., Whalley C., Graham I.A., Penfield S. Induction of dormancy in Arabidopsis summer annuals requires parallel regulation of DOG1 and hormone metabolism by low temperature and CBF transcription factors. Plant Cell 2011, 23:2568-2580.
18. Kobe B., Kajava A.V. The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 2001, 11:725-732.
19. Langfelder P., Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinf 2008, 9:559.
20. Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
21. Li J., Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell 1997, 90:929-938.
22. Li J., Wen J., Lease K.A., Doke J.T., Tax F.E., Walker J. CBA K1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling. Cell 2002, 110:213-222.
23. Lim S.D., Hwang J.G., Jung C.G., Hwang S.G., Moon J.C., Jang C.S. Comprehensive analysis of the rice RING E3 ligase family reveals their functional diversity in response to abiotic stress. DNA Res 2013, 20:299-314.
24. Nelson B.K., Cai X., Nebenfuhr A. A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J 2007, 51:1126-1136.
25. Nuhse T.S., Stensballe A., Jensen O.N., Peck S.C. Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 2004, 16:2394-2405.
26. Ozakca DU. Effect of Abiotic Stress on Photosystem I-Related Gene Transcription in Photosynthetic Organisms. Photosynthesis, Dubinsky Z (Ed.), ISBN: 978-953-51-1161-0, InTech 2013; DOI: 10.5772/55350. Available from: http://www.intechopen.com/books/photosynthesis/effect-of-abiotic-stress-on-photosystem-i-related-gene-transcription-in-photosynthetic-organisms.
27. Pecinka A., Dinh H.Q., Baubec T., Rosa M., Lettner N., Mittelsten Scheid O. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 2010, 22:3118-3129.
28. Penfield S. Temperature perception and signal transduction in plants. New Phytol 2008, 179:615-628.
29. Sakuma Y., Maruyama K., Osakabe Y., Qin F., Seki M., Shinozaki K., et al. Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 2006, 18:1292-1309.
30. Shiu S.H., Bleecker A.B. Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci USA 2001, 98:10763-10768.
31. Sonnhammer E.L., Eddy S.R., Durbin R. Pfam: a comprehensive database of protein domain families based on seed alignments. Proteins: Struct Funct Genet 1997, 28:405-420.
32. Torii K.U. Leucine-rich repeat receptor kinases in plants: structure, function, and signal transduction pathways. Int Rev Cytol 2004, 234:1-46.
33. Umate P. Genome-wide analysis of the family of light-harvesting chlorophyll a/b-binding proteins in Arabidopsis and rice. Plant Signaling Behav 2010, 5:1537-1542.
34. Vinocur B., Altman A. Recent advances in engineering plant tolerance to abiotic stress: achievements and limitations. Curr Opin Biotechnol 2005, 16:123-132.
35. Yamaguchi-Shinozaki K., Shinozaki K. Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol 2006, 57:781-803.
36. Yan L., Ma Y., Liu D., Wei X., Sun Y., Chen X., et al. Structural basis for the impact of phosphorylation on the activation of plant receptor-like kinase BAK1. Cell Res 2012, 22:1304-1308.
37. Yang L., Wu K., Gao P., Liu X., Li G., Wu Z. GsLRPK, a novel cold-activated leucine-rich repeat receptor-like protein kinase from Glycine soja, is a positive regulator to cold stress tolerance. Plant Sci 2014, 215:19-28.
38. Zhang X., Rerksiri W., Liu A., Zhou X., Xiong H., Xiang J., et al. Transcriptome profile reveals heat response mechanism at molecular and metabolic levels in rice flag leaf. Gene 2013, 530:185-192.
39. Zhang X., Henriques R., Lin S.S., Niu Q.W., Chua N.H. Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat Protoc 2006, 1:641-646.