메뉴 건너뛰기




Volumn 24, Issue , 2015, Pages 1-9

Unravelling plant molecular machineries through affinity purification coupled to mass spectrometry

Author keywords

[No Author keywords available]

Indexed keywords

VEGETABLE PROTEIN;

EID: 84921023659     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2015.01.001     Document Type: Review
Times cited : (23)

References (59)
  • 1
    • 0032489015 scopus 로고    scopus 로고
    • The cell as a collection of protein machines: preparing the next generation of molecular biologists
    • Alberts B. The cell as a collection of protein machines: preparing the next generation of molecular biologists. Cell 1998, 92:291-294.
    • (1998) Cell , vol.92 , pp. 291-294
    • Alberts, B.1
  • 2
    • 84857780876 scopus 로고    scopus 로고
    • Evidence for network evolution in an Arabidopsis interactome map
    • Evidence for network evolution in an Arabidopsis interactome map. Science (New York, NY) 2011, 333:601-607.
    • (2011) Science (New York, NY) , vol.333 , pp. 601-607
  • 8
    • 1842430185 scopus 로고    scopus 로고
    • Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants
    • Rohila J.S., Chen M., Cerny R., Fromm M.E. Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J 2004, 38:172-181.
    • (2004) Plant J , vol.38 , pp. 172-181
    • Rohila, J.S.1    Chen, M.2    Cerny, R.3    Fromm, M.E.4
  • 9
    • 53149142072 scopus 로고    scopus 로고
    • Boosting tandem affinity purification of plant protein complexes
    • Van Leene J., Witters E., Inzé D., De Jaeger G. Boosting tandem affinity purification of plant protein complexes. Trends Plant Sci 2008, 13:517-520.
    • (2008) Trends Plant Sci , vol.13 , pp. 517-520
    • Van Leene, J.1    Witters, E.2    Inzé, D.3    De Jaeger, G.4
  • 18
    • 49349094706 scopus 로고    scopus 로고
    • Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling
    • Saijo Y., Zhu D., Li J., Rubio V., Zhou Z., Shen Y., Hoecker U., Wang H., Deng X.W. Arabidopsis COP1/SPA1 complex and FHY1/FHY3 associate with distinct phosphorylated forms of phytochrome A in balancing light signaling. Mol Cell 2008, 31:607-613.
    • (2008) Mol Cell , vol.31 , pp. 607-613
    • Saijo, Y.1    Zhu, D.2    Li, J.3    Rubio, V.4    Zhou, Z.5    Shen, Y.6    Hoecker, U.7    Wang, H.8    Deng, X.W.9
  • 19
    • 33745711847 scopus 로고    scopus 로고
    • Identification of phytochrome-interacting protein candidates in Arabidopsis thaliana by co-immunoprecipitation coupled with MALDI-TOF MS
    • Phee B.-K., Shin D.H., Cho J.-H., Kim S.-H., Kim J.-I., Lee Y.-H., Jeon J.-S., Bhoo S.H., Hahn T.-R. Identification of phytochrome-interacting protein candidates in Arabidopsis thaliana by co-immunoprecipitation coupled with MALDI-TOF MS. Proteomics 2006, 6:3671-3680.
    • (2006) Proteomics , vol.6 , pp. 3671-3680
    • Phee, B.-K.1    Shin, D.H.2    Cho, J.-H.3    Kim, S.-H.4    Kim, J.-I.5    Lee, Y.-H.6    Jeon, J.-S.7    Bhoo, S.H.8    Hahn, T.-R.9
  • 21
    • 72049103147 scopus 로고    scopus 로고
    • Domain swapping to assess the mechanistic basis of Arabidopsis phototropin 1 receptor kinase activation and endocytosis by blue light
    • Kaiserli E., Sullivan S., Jones M.A., Feeney K.A., Christie J.M. Domain swapping to assess the mechanistic basis of Arabidopsis phototropin 1 receptor kinase activation and endocytosis by blue light. Plant Cell 2009, 21:3226-3244.
    • (2009) Plant Cell , vol.21 , pp. 3226-3244
    • Kaiserli, E.1    Sullivan, S.2    Jones, M.A.3    Feeney, K.A.4    Christie, J.M.5
  • 23
    • 58149217038 scopus 로고    scopus 로고
    • A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization
    • De Lucia F., Crevillen P., Jones A.M.E., Greb T., Dean C. A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization. Proc Natl Acad Sci U S A 2008, 105:16831-16836.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 16831-16836
    • De Lucia, F.1    Crevillen, P.2    Jones, A.M.E.3    Greb, T.4    Dean, C.5
  • 24
    • 84892480572 scopus 로고    scopus 로고
    • The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling
    • Choi H., Jeong S., Kim D.S., Na H.J., Ryu J.S., Lee S.S., Nam H.G., Lim P.O., Woo H.R. The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling. Physiol Plant 2014, 150:308-320.
    • (2014) Physiol Plant , vol.150 , pp. 308-320
    • Choi, H.1    Jeong, S.2    Kim, D.S.3    Na, H.J.4    Ryu, J.S.5    Lee, S.S.6    Nam, H.G.7    Lim, P.O.8    Woo, H.R.9
  • 25
    • 36049031801 scopus 로고    scopus 로고
    • SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity
    • Batelli G., Verslues P.E., Agius F., Qiu Q., Fujii H., Pan S., Schumaker K.S., Grillo S., Zhu J.-K. SOS2 promotes salt tolerance in part by interacting with the vacuolar H+-ATPase and upregulating its transport activity. Mol Cell Biol 2007, 27:7781-7790.
    • (2007) Mol Cell Biol , vol.27 , pp. 7781-7790
    • Batelli, G.1    Verslues, P.E.2    Agius, F.3    Qiu, Q.4    Fujii, H.5    Pan, S.6    Schumaker, K.S.7    Grillo, S.8    Zhu, J.-K.9
  • 26
    • 79551629546 scopus 로고    scopus 로고
    • Identification and characterization of nuclear pore complex components in Arabidopsis thaliana
    • Tamura K., Fukao Y., Iwamoto M., Haraguchi T., Hara-Nishimura I. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Plant Cell 2010, 22:4084-4097.
    • (2010) Plant Cell , vol.22 , pp. 4084-4097
    • Tamura, K.1    Fukao, Y.2    Iwamoto, M.3    Haraguchi, T.4    Hara-Nishimura, I.5
  • 27
    • 77955485244 scopus 로고    scopus 로고
    • Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes
    • Book A.J., Gladman N.P., Lee S.-S., Scalf M., Smith L.M., Vierstra R.D. Affinity purification of the Arabidopsis 26 S proteasome reveals a diverse array of plant proteolytic complexes. J Biol Chem 2010, 285:25554-25569.
    • (2010) J Biol Chem , vol.285 , pp. 25554-25569
    • Book, A.J.1    Gladman, N.P.2    Lee, S.-S.3    Scalf, M.4    Smith, L.M.5    Vierstra, R.D.6
  • 28
    • 33646935238 scopus 로고    scopus 로고
    • Effects of mutations and constitutive overexpression of EDS1 and PAD4 on plant resistance to different types of microbial pathogens
    • Xing D., Chen Z. Effects of mutations and constitutive overexpression of EDS1 and PAD4 on plant resistance to different types of microbial pathogens. Plant Sci 2006, 171:251-262.
    • (2006) Plant Sci , vol.171 , pp. 251-262
    • Xing, D.1    Chen, Z.2
  • 29
    • 34347378219 scopus 로고    scopus 로고
    • Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to Potato virus X
    • Tameling W.I.L., Baulcombe D.C. Physical association of the NB-LRR resistance protein Rx with a Ran GTPase-activating protein is required for extreme resistance to Potato virus X. Plant Cell 2007, 19:1682-1694.
    • (2007) Plant Cell , vol.19 , pp. 1682-1694
    • Tameling, W.I.L.1    Baulcombe, D.C.2
  • 30
    • 61349113308 scopus 로고    scopus 로고
    • Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components
    • Qi Y., Katagiri F. Purification of low-abundance Arabidopsis plasma-membrane protein complexes and identification of candidate components. Plant J: Cell Mol Biol 2009, 57:932-944.
    • (2009) Plant J: Cell Mol Biol , vol.57 , pp. 932-944
    • Qi, Y.1    Katagiri, F.2
  • 31
    • 70049106584 scopus 로고    scopus 로고
    • Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity
    • Monaghan J., Xu F., Gao M., Zhao Q., Palma K., Long C., Chen S., Zhang Y., Li X. Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity. PLoS Pathog 2009, 5:e1000526.
    • (2009) PLoS Pathog , vol.5 , pp. e1000526
    • Monaghan, J.1    Xu, F.2    Gao, M.3    Zhao, Q.4    Palma, K.5    Long, C.6    Chen, S.7    Zhang, Y.8    Li, X.9
  • 32
    • 84894574057 scopus 로고    scopus 로고
    • Identification of the self-incompatibility locus F-box protein-containing complex in Petunia inflata
    • Li S., Sun P., Williams J.S., Kao T.-H. Identification of the self-incompatibility locus F-box protein-containing complex in Petunia inflata. Plant Reprod 2014, 27:31-45.
    • (2014) Plant Reprod , vol.27 , pp. 31-45
    • Li, S.1    Sun, P.2    Williams, J.S.3    Kao, T.-H.4
  • 36
  • 37
    • 84874089670 scopus 로고    scopus 로고
    • Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry
    • Lavallée-Adam M., Rousseau J., Domecq C., Bouchard A., Forget D., Faubert D., Blanchette M., Coulombe B. Discovery of cell compartment specific protein-protein interactions using affinity purification combined with tandem mass spectrometry. J Proteome Res 2013, 12:272-281.
    • (2013) J Proteome Res , vol.12 , pp. 272-281
    • Lavallée-Adam, M.1    Rousseau, J.2    Domecq, C.3    Bouchard, A.4    Forget, D.5    Faubert, D.6    Blanchette, M.7    Coulombe, B.8
  • 41
    • 1842430185 scopus 로고    scopus 로고
    • Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants
    • Rohila J.S., Chen M., Cerny R., Fromm M.E. Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J: Cell Mol Biol 2004, 38:172-181.
    • (2004) Plant J: Cell Mol Biol , vol.38 , pp. 172-181
    • Rohila, J.S.1    Chen, M.2    Cerny, R.3    Fromm, M.E.4
  • 44
    • 84857834641 scopus 로고    scopus 로고
    • Assignment of protein interactions from affinity purification/mass spectrometry data
    • Pardo M., Choudhary J.S. Assignment of protein interactions from affinity purification/mass spectrometry data. J Proteome Res 2012, 11:1462-1474.
    • (2012) J Proteome Res , vol.11 , pp. 1462-1474
    • Pardo, M.1    Choudhary, J.S.2
  • 45
    • 84893483262 scopus 로고    scopus 로고
    • Expression of a translationally fused TAP-tagged plasma membrane proton pump in Arabidopsis thaliana
    • Rodrigues R.B., Sabat G., Minkoff B.B., Burch H.L., Nguyen T.T., Sussman M.R. Expression of a translationally fused TAP-tagged plasma membrane proton pump in Arabidopsis thaliana. Biochemistry 2014, 53:566-578.
    • (2014) Biochemistry , vol.53 , pp. 566-578
    • Rodrigues, R.B.1    Sabat, G.2    Minkoff, B.B.3    Burch, H.L.4    Nguyen, T.T.5    Sussman, M.R.6
  • 56
    • 79953857473 scopus 로고    scopus 로고
    • Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development
    • Zhu H., Hu F., Wang R., Zhou X., Sze S.-H., Liou L.W., Barefoot A., Dickman M., Zhang X. Arabidopsis Argonaute10 specifically sequesters miR166/165 to regulate shoot apical meristem development. Cell 2011, 145:242-256.
    • (2011) Cell , vol.145 , pp. 242-256
    • Zhu, H.1    Hu, F.2    Wang, R.3    Zhou, X.4    Sze, S.-H.5    Liou, L.W.6    Barefoot, A.7    Dickman, M.8    Zhang, X.9
  • 57
    • 84907030959 scopus 로고    scopus 로고
    • A generic protocol for the purification and characterization of water-soluble complexes of affinity-tagged proteins and lipids
    • Maeda K., Poletto M., Chiapparino A., Gavin A.-C. A generic protocol for the purification and characterization of water-soluble complexes of affinity-tagged proteins and lipids. Nat Protoc 2014, 9:2256-2266.
    • (2014) Nat Protoc , vol.9 , pp. 2256-2266
    • Maeda, K.1    Poletto, M.2    Chiapparino, A.3    Gavin, A.-C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.