Applied systematics

Laboratory Diagnosis of Bacterial Infections

Volumn , Issue , 2001, Pages 9-32

  Magee, John T ^a  

^a CARDIFF UNIVERSITY   (United Kingdom)

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[No Author keywords available]

Indexed keywords

EID: 84920994713     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (56)

1. Cowan ST. Taxonomic rank of the Enterobacteriaceae ‘groups’. J Gen Microbiol 1956; 15: 345-349.
2. Cowan ST. The microbial species - a macromyth? In: Ainsworth GC, Sneath PHA, eds. Microbial Classification. Cambridge:Cambridge University Press, 1962:433-455.
3. Cowan ST. A Dictionary of Microbial Taxonomy. Cambridge:Cambridge University Press, 1978.
4. Barrow GI, Feltham RKA. Cowan and Steel's Manual for the Identification of Medical Bacteria, 3rd edition. Cambridge:Cambridge University Press, 1993.
5. Logan NA. Bacterial Systematics. Oxford:Blackwell Science, 1995.
6. Priest FG, Austin B. Modem Bacterial Taxonomy. London:Chapman & Hall, 1994.
7. Sokal RR, Sneath PHA. Principles ofNumerical Taxonomy. San Francisco:Freeman, 1963.
8. Sneath PHA, Sokal RR. Numerical Taxonomy: The Principles and Practice of Numerical Classification. San Francisco:Freeman, 1973.
9. Dunn G, Everitt BS. An Introduction to Mathematical Taxonomy. Cambridge:Cambridge University Press, 1982.
10. Goodfellow M, Minnikin DE, eds. Chemical Methods in Bacterial Systematics. London:Academic Press, 1985.
11. Goodfellow M, O’Donnell AG, eds. Handbook of New Bacterial Systematics. London:Academic Press, 1993.
12. Stackebrandt E, Goodfellow M, eds. Nucleic Acid Techniques in Bacterial Systematics. ChichesterJohn Wiley and Sons, 1991.
13. Claridge MF, Dawah HA, Wilson MR, eds. Species: The Units of Biodiversity. London:Chapman & Hall, 1997.
14. Sneath PHA. International Code of Nomenclature of Bacteria, 1990 Revision. Washington DC: American Society for Microbiology, 1992.
15. Skennan VBD, McGowan V, Sneath PHA. Approved lists of bacterial names. Int J Syst Bacteriol 1980; 30:225-420.
16. Skerman VBD, McGowan V, Sneath PHA. Approved Lists of Bacterial Names (Amended Edition). Washington DC:American Society for Microbiology, 1989.
17. Holt JG - ed. Bergey's Manual of Systematic Bacteriology. Baltimore:Williams & Wilkins, 1984.
18. Levy-Frebault VB, Portaels F. Proposed minimal standards for the genus Mycobacterium and for description of new slowly growing Mycobacterium species. Int J Syst Bacteriol 1992; 42:315-323.
19. Ursing JB, Lior H, Owen RJ. Proposal for minimal standards for describing new species of the family Campy- lobacteriaceae. Int J Syst Bacteriol 1994; 44:42-45.
20. ICSB Subcommittee on Taxonomy of the Mollicutes. Revised minimal standards for description of new species of the class Mollicutes. Int J Syst Bacteriol 1995; 45:605-612.
21. Bousefield IJ. Bacterial nomenclature and its role in systematics. In: Goodfellow M, O’Donnell AG, eds. Handbook of New Bacterial Sytematics. London:Academic Press, 1993:318-338.
22. MacAdoo TO. Nomenclature! literacy. In: Goodfellow M, O’Donnell AG, eds. Handbook of New Bacterial Sytematics. London:Academic Press, 1993:339-358.
23. Murray RGE, Schleifer KH. Taxonomic note: a proposal for recording the properties of putative taxa of procaryotes. Int J Syst Bacteriol 1994; 44:174-176.
24. Murray RGE. Stackebrandt E. Taxonomic note: implementation of the provisional status Candidates for incompletely described prokaryotes. Int J Syst Bacteriol 1995; 45:186.
25. Mackenzie DWR, Odds FC. Non-identity and authentication of two major reference strains of Candida albicans. J Med Vet Microbiol 1991; 29:225-261.
26. Magee JT. Whole organism fingerprinting. In: Goodfellow M, O’Donnell AG, eds. Handbook of New Bacterial Systematics. London: Academic Press, 1993:383-427.
27. Goodacre R, Timmins EM, Burton R, Kaderbhai N, Woodward AM, Kell DB, Rooney PJ. Rapid identification of urinary tract infection bacteria using hyperspectral, whole organism fingerprinting and artificial neural networks. Microbiology 1998; 144:1157-1170.
28. Hauge JG. Kinctics and specificity of glucose dehydrogenase from Bacterium anitratum. Biochem Biophys Acta 1960; 45:263-269.
29. Murdoch DA. Gram-positive anaerobic cocci. Clin Microbiol Rev 1998; 11:81-122.
30. Moss CW, Dees SB. Identification of micro-organisms by gas chromatography-mass spectrometric analysis of cellular fatty acids. J Chromatogr 1975; 112:595-604.
31. Magee JT. Analytical fingerprinting methods. In: Goodfellow M, O’Donnell AG, eds. Chemical Methods in the Classification of Prokaryotes. ChichestenJohn Wiley and Sons, 1994:523-553.
32. Claydon MA. Davey SN, Edwards-Jones V, Gordon DB. The rapid identification of intact microorganisms using mass spectrometry. Nature Biotechnol 1996; 14:1584-1586.
33. Naumann D, Helm D, Labischinski H, Giesbrecht P. The characterisation of microorganisms by Fourier- transform infrared spectroscopy (FT-IR). In: Nelson WH, ed. Modem Techniques for Rapid Microbiological Analysis. New York:VCH Publishers. 1991:43-96.
34. Goodacre R, Timmins EM, Rooney PJ, Rowland JJ, Kell DB. Rapid identification of Streptococcus and Entero- coccus species using diffuse reflectance-absorbance Fourier Transform infrared spectroscopy and artificial neural networks. FEMS Microbiol Lett 1996; 140:233-239.
35. Nelson WH, Sperry JF. UV resonance Raman spectroscopic detection and identification of bacteria and other microorganisms. In: Nelson WH, ed. Modem Techniques for Rapid Microbiological Analysis. New York:VCH Publishers, 1991:97-143.
36. Vauterin L, Swings J, Kersters K. Protein electrophoresis and classification. In: Goodfellow M, O’Donnell AG, eds. Handbook of New Bacterial Systematics. London: Academic Press, 1993:251-280.
37. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler P, Krichevsky MI, Moore LH, Moore WEC, Murray RGE, Stackebrandt E, Starr MP, Truper HG. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 1987; 37:463-464.
38. Stackebrandt E, Goebel BM. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 1994; 44:846-849.
39. Persing D, Smith TF, Tenover FC, White TJ. Diagnostic Molecular Microbiology. Washington DC:American Society for Microbiology, 1993.
40. Rocha AD, Leite CD, Torres HM, deMiranda AB, Lopes MQP, Degrave WM, Suffys PN. Use of PCR- restriction fragment length polymorphisms analysis of the hp65 gene for rapid identification of mycobacteria in Brazil. J Microbiol Methods'l999; 37:223-229.
41. Hall V, O'Neill G, Magee JT, Duerden BI. Amplified ribosomal DNA restriction analysis for identification of Actinomyces species. J Clin Microbiol 1999; 37:2255-2261.
42. Vaneechoutte M. Cartwright CP, Williams EC, Jager B. Tichy H-V, De Baere T, De Rouck A, Verschraegen G. Evaluation of 16S rRNA gene restriction analysis for the identification of cultured organisms of clinically important Clostridium species. Anaerobe 1996; 2:249-256.
43. Johnston M. Gene chips: array of hope for understanding gene regulation. Curr Biol 1998; 8:R171-RI74
44. Lamture JB, Beattie KL, Burke BE, Eggers MD, Ehrlich DJ, Fowler R, Hollis MA, Kosicki BB, Reich RK, Smith SR, Varma RS, Hogan ME. Direct detection of nucleic acid hybridization on the surface of a charge coupled device. Nucleic Acids Res 1994; 22:2121-2125.
45. Cheng J, Sheldon EL, Wu L, Uribe A, Gerrue LO, Carrino J, Heller MJ, O'Connell JP. Preparation and hybridization analysis of DNA/RNA from E coli on microfabricated bioelectronic chips. Nature Biotechnol 1998;16:541-546
46. Pethig R. Electrokinetic manipulation of bioparticles. In: Coombs RRH, Robinson DW, eds. Nanotechnology in Medicine and the Biosciences. Amsterdam:Gordon & Breach, 1996:153-168.
47. Kopp MU, Mello AJ, Manz A. Chemical amplification: continuous-flow PCR on a chip. Science 1998; 280:1046-1048.
48. Cohn F. Untersuchungen flber bacterien. Beitr Biol Pfl I heft 1872; 2:127.
49. Murray RGE. Fine structure and taxonomy of bacteria. In: Ainsworth GC, Sneath PHA. eds. Microbial Classification. Cambridge:Cambridge University Press, 1962.
50. Gibbons NE, Murray RGE. Proposals concerning the higher taxa of bacteria. Int J Syst Bacteriol 1978; 28:1-6.
51. Sogin ML, Silberman JD, Hinkel G, Morrison HG. Problems with molecular diversity in the Eukarya. In: Roberts DMcL, Sharp P, Alderson G, Collins M, eds. Evolution of Microbial Life. Cambridge.Cambridge University Press, 1996:167-184.
52. Fenchel T. Eukaryotic life: anaerobic physiology. In: Roberts DMcL. Sharp P, Alderson G, Collins M, eds. Evolution of Microbial Life. Cambridge:Cambridge University Press, 1996:185-203.
53. Willcox WR, LaPage SP, Holmes B. A review of numerical methods in bacterial identification. Antonie van Leeuwenhoek 1980; 46:233-299.
54. Colwell RR. Polyphasic taxonomy of bacteria In: Iizuka H, Hasegawa T, eds. Culture Collections of Microorganisms. Tokyo:University of Tokyo Press, 1970:421-436.
55. Woese CR. Bacterial evolution. Microbiol Rev 1987; 51:221-271.
56. Batchelor BI, Brindle RJ, Gilks GF, Selkon JB. Biochemical misidentification of Brucella melitensis and subsequent laboratory-acquired infections. J Hosp Infect 1992; 22:159-162.