-
1
-
-
33746807366
-
Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation
-
Agius, F., Kapoor, A., and, Zhu, J.K., (2006) Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation. Proc. Natl Acad. Sci. USA, 103, 11796-11801.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 11796-11801
-
-
Agius, F.1
Kapoor, A.2
Zhu, J.K.3
-
2
-
-
79961001437
-
Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
-
Ahmed, I., Sarazin, A., Bowler, C., et al. (2011) Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis. Nucleic Acids Res. 39, 6919-6931.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 6919-6931
-
-
Ahmed, I.1
Sarazin, A.2
Bowler, C.3
-
4
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative.
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
5
-
-
64349091471
-
Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells
-
Ball, M.P., Li, J.B., Gao, Y., et al. (2009) Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. Nat. Biotech. 27, 361-368.
-
(2009)
Nat. Biotech.
, vol.27
, pp. 361-368
-
-
Ball, M.P.1
Li, J.B.2
Gao, Y.3
-
6
-
-
2942672959
-
Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems
-
Bao, X., Franks, R.G., Levin, J.Z., et al. (2004) Repression of AGAMOUS by BELLRINGER in floral and inflorescence meristems. Plant Cell, 16, 1478-1489.
-
(2004)
Plant Cell
, vol.16
, pp. 1478-1489
-
-
Bao, X.1
Franks, R.G.2
Levin, J.Z.3
-
7
-
-
84864303162
-
First exon length controls active chromatin signatures and transcription
-
Bieberstein, N.I., Carrillo Oesterreich, F., Straube, K., et al. (2012) First exon length controls active chromatin signatures and transcription. Cell Rep. 2, 62-68.
-
(2012)
Cell Rep.
, vol.2
, pp. 62-68
-
-
Bieberstein, N.I.1
Carrillo Oesterreich, F.2
Straube, K.3
-
8
-
-
0036144048
-
DNA methylation patterns and epigenetic memory
-
Bird, A., (2002) DNA methylation patterns and epigenetic memory. Genes Dev. 16, 6-21.
-
(2002)
Genes Dev.
, vol.16
, pp. 6-21
-
-
Bird, A.1
-
9
-
-
0027518011
-
Control of flower development in Arabidopsis thaliana by APETALA1 and interacting genes
-
Bowman, J.L., Alvarez, J., Weigel, D., et al. (1993) Control of flower development in Arabidopsis thaliana by APETALA1 and interacting genes. Development, 119, 721-743.
-
(1993)
Development
, vol.119
, pp. 721-743
-
-
Bowman, J.L.1
Alvarez, J.2
Weigel, D.3
-
10
-
-
51849126044
-
Longer first introns are a general property of eukaryotic gene structure
-
Bradnam, K.R., and, Korf, I., (2008) Longer first introns are a general property of eukaryotic gene structure. PLoS One, 3, e3093.
-
(2008)
PLoS One
, vol.3
, pp. e3093
-
-
Bradnam, K.R.1
Korf, I.2
-
11
-
-
79251567720
-
DNA methylation of the first exon is tightly linked to transcriptional silencing
-
Brenet, F., Moh, M., Funk, P., et al. (2011) DNA methylation of the first exon is tightly linked to transcriptional silencing. PLoS One, 6, e14524.
-
(2011)
PLoS One
, vol.6
, pp. e14524
-
-
Brenet, F.1
Moh, M.2
Funk, P.3
-
12
-
-
17744364327
-
Gardening the genome: DNA methylation in Arabidopsis thaliana
-
Chan, S.W., Henderson, I.R., and, Jacobsen, S.E., (2005) Gardening the genome: DNA methylation in Arabidopsis thaliana. Nat. Rev. Genet. 6, 351-360.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 351-360
-
-
Chan, S.W.1
Henderson, I.R.2
Jacobsen, S.E.3
-
13
-
-
78751566735
-
Molecular control of microsporogenesis in Arabidopsis
-
Chang, F., Wang, Y., Wang, S., et al. (2011) Molecular control of microsporogenesis in Arabidopsis. Curr. Opin. Plant Biol. 14, 66-73.
-
(2011)
Curr. Opin. Plant Biol.
, vol.14
, pp. 66-73
-
-
Chang, F.1
Wang, Y.2
Wang, S.3
-
14
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu, R.K., Feng, S., Bernatavichute, Y.V., et al. (2010) Relationship between nucleosome positioning and DNA methylation. Nature, 466, 388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
-
15
-
-
84866864992
-
Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons
-
Chuang, T.J., Chen, F.C., and, Chen, Y.Z., (2012) Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons. Proc. Natl Acad. Sci. USA, 109, 15841-15846.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 15841-15846
-
-
Chuang, T.J.1
Chen, F.C.2
Chen, Y.Z.3
-
16
-
-
79960572626
-
The MspJI family of modification-dependent restriction endonucleases for epigenetic studies
-
Cohen-Karni, D., Xu, D., Apone, L., et al. (2011) The MspJI family of modification-dependent restriction endonucleases for epigenetic studies. Proc. Natl Acad. Sci. USA, 108, 11040-11045.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 11040-11045
-
-
Cohen-Karni, D.1
Xu, D.2
Apone, L.3
-
17
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus, S.J., Feng, S., Zhang, X., et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature, 452, 215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
-
18
-
-
0033731176
-
LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development
-
Conner, J., and, Liu, Z., (2000) LEUNIG, a putative transcriptional corepressor that regulates AGAMOUS expression during flower development. Proc. Natl Acad. Sci. USA, 97, 12902-12907.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 12902-12907
-
-
Conner, J.1
Liu, Z.2
-
19
-
-
68249145361
-
Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIA
-
Das, P., Ito, T., Wellmer, F., et al. (2009) Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIA. Development, 136, 1605-1611.
-
(2009)
Development
, vol.136
, pp. 1605-1611
-
-
Das, P.1
Ito, T.2
Wellmer, F.3
-
20
-
-
77952734605
-
Conservation and divergence of methylation patterning in plants and animals
-
Feng, S., Cokus, S.J., Zhang, X., et al. (2010) Conservation and divergence of methylation patterning in plants and animals. Proc. Natl Acad. Sci. USA, 107, 8689-8694.
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 8689-8694
-
-
Feng, S.1
Cokus, S.J.2
Zhang, X.3
-
21
-
-
84868017347
-
GFOLD: A generalized fold change for ranking differentially expressed genes from RNA-seq data
-
Feng, J., Meyer, C.A., Wang, Q., et al. (2012) GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data. Bioinformatics, 28, 2782-2788.
-
(2012)
Bioinformatics
, vol.28
, pp. 2782-2788
-
-
Feng, J.1
Meyer, C.A.2
Wang, Q.3
-
22
-
-
0037653800
-
Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER
-
Ferrandiz, C., Gu, Q., Martienssen, R., et al. (2000) Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER. Development, 127, 725-734.
-
(2000)
Development
, vol.127
, pp. 725-734
-
-
Ferrandiz, C.1
Gu, Q.2
Martienssen, R.3
-
23
-
-
0029738387
-
Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development
-
Finnegan, E.J., Peacock, W.J., and, Dennis, E.S., (1996) Reduced DNA methylation in Arabidopsis thaliana results in abnormal plant development. Proc. Natl Acad. Sci. USA, 93, 8449-8454.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 8449-8454
-
-
Finnegan, E.J.1
Peacock, W.J.2
Dennis, E.S.3
-
24
-
-
33644753234
-
The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms
-
Finnegan, E.J., Kovac, K.A., Jaligot, E., et al. (2005) The downregulation of FLOWERING LOCUS C (FLC) expression in plants with low levels of DNA methylation and by vernalization occurs by distinct mechanisms. Plant J. 44, 420-432.
-
(2005)
Plant J.
, vol.44
, pp. 420-432
-
-
Finnegan, E.J.1
Kovac, K.A.2
Jaligot, E.3
-
25
-
-
84880806371
-
Functional roles of histone modification, chromatin remodeling and microRNAs in Arabidopsis flower development
-
Waltham, MA: Academic Press
-
Gan, E.-S., Huang, J., and, Ito, T., (2013) Functional roles of histone modification, chromatin remodeling and microRNAs in Arabidopsis flower development. In International Review of Cell and Molecular Biology (, Kwang, W.J., ed). Waltham, MA: Academic Press, pp. 115-161.
-
(2013)
International Review of Cell and Molecular Biology
, pp. 115-161
-
-
Gan, E.-S.1
Huang, J.2
Ito, T.3
Kwang, W.J.4
-
26
-
-
78649291880
-
Signaling and transcriptional control of reproductive development in Arabidopsis
-
Ge, X., Chang, F., and, Ma, H., (2010) Signaling and transcriptional control of reproductive development in Arabidopsis. Curr. Biol. 20, R988-R997.
-
(2010)
Curr. Biol.
, vol.20
, pp. R988-R997
-
-
Ge, X.1
Chang, F.2
Ma, H.3
-
27
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring, M., Bubb, K.L., and, Henikoff, S., (2009) Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science, 324, 1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
28
-
-
84875971371
-
CHH islands: De novo DNA methylation in near-gene chromatin regulation in maize
-
Gent, J.I., Ellis, N.A., Guo, L., et al. (2013) CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize. Genome Res. 23, 628-637.
-
(2013)
Genome Res.
, vol.23
, pp. 628-637
-
-
Gent, J.I.1
Ellis, N.A.2
Guo, L.3
-
29
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll, M.G., and, Bestor, T.H., (2005) Eukaryotic cytosine methyltransferases. Annu. Rev. Biochem. 74, 481-514.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
30
-
-
14044270789
-
Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis
-
Gomez-Mena, C., de Folter, S., Costa, M.M., et al. (2005) Transcriptional program controlled by the floral homeotic gene AGAMOUS during early organogenesis. Development, 132, 429-438.
-
(2005)
Development
, vol.132
, pp. 429-438
-
-
Gomez-Mena, C.1
De Folter, S.2
Costa, M.M.3
-
31
-
-
0037074009
-
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase
-
Gong, Z., Morales-Ruiz, T., Ariza, R.R., et al. (2002) ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell, 111, 803-814.
-
(2002)
Cell
, vol.111
, pp. 803-814
-
-
Gong, Z.1
Morales-Ruiz, T.2
Ariza, R.R.3
-
32
-
-
84977794765
-
Gviz: Plotting data and annotation information along genomic coordinates
-
Hahne, F., Durinck, S., Ivanek, R., Mueller, A., Lianoglou, S., Tan, G., and, Parsons, L., (2013) Gviz: Plotting data and annotation information along genomic coordinates. R package version, 1 (8), 4.
-
(2013)
R Package Version
, vol.1
, Issue.8
, pp. 4
-
-
Hahne, F.1
Durinck, S.2
Ivanek, R.3
Mueller, A.4
Lianoglou, S.5
Tan, G.6
Parsons, L.7
-
33
-
-
79952535972
-
Regulation and function of DNA methylation in plants and animals
-
He, X.J., Chen, T., and, Zhu, J.K., (2011) Regulation and function of DNA methylation in plants and animals. Cell Res. 21, 442-465.
-
(2011)
Cell Res.
, vol.21
, pp. 442-465
-
-
He, X.J.1
Chen, T.2
Zhu, J.K.3
-
34
-
-
84868142098
-
Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease
-
Horton, J.R., Mabuchi, M.Y., Cohen-Karni, D., et al. (2012) Structure and cleavage activity of the tetrameric MspJI DNA modification-dependent restriction endonuclease. Nucleic Acids Res. 40, 9763-9773.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 9763-9773
-
-
Horton, J.R.1
Mabuchi, M.Y.2
Cohen-Karni, D.3
-
35
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh, T.F., Ibarra, C.A., Silva, P., et al. (2009) Genome-wide demethylation of Arabidopsis endosperm. Science, 324, 1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.F.1
Ibarra, C.A.2
Silva, P.3
-
36
-
-
84879038863
-
High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI
-
Huang, X., Lu, H., Wang, J.W., et al. (2013) High-throughput sequencing of methylated cytosine enriched by modification-dependent restriction endonuclease MspJI. BMC Genet. 14, 56.
-
(2013)
BMC Genet.
, vol.14
, pp. 56
-
-
Huang, X.1
Lu, H.2
Wang, J.W.3
-
37
-
-
0034708232
-
Ectopic hypermethylation of flower-specific genes in Arabidopsis
-
Jacobsen, S.E., Sakai, H., Finnegan, E.J., et al. (2000) Ectopic hypermethylation of flower-specific genes in Arabidopsis. Curr. Biol. 10, 179-186.
-
(2000)
Curr. Biol.
, vol.10
, pp. 179-186
-
-
Jacobsen, S.E.1
Sakai, H.2
Finnegan, E.J.3
-
38
-
-
84876072593
-
A potential role for CHH DNA methylation in cotton fiber growth patterns
-
Jin, X., Pang, Y., Jia, F., et al. (2013) A potential role for CHH DNA methylation in cotton fiber growth patterns. PLoS One, 8, e60547.
-
(2013)
PLoS One
, vol.8
, pp. e60547
-
-
Jin, X.1
Pang, Y.2
Jia, F.3
-
39
-
-
0033398983
-
RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing
-
Jones, L., Hamilton, A.J., Voinnet, O., et al. (1999) RNA-DNA interactions and DNA methylation in post-transcriptional gene silencing. Plant Cell, 11, 2291-2301.
-
(1999)
Plant Cell
, vol.11
, pp. 2291-2301
-
-
Jones, L.1
Hamilton, A.J.2
Voinnet, O.3
-
40
-
-
77955844620
-
DNA methylation reprogramming during plant sexual reproduction?
-
Jullien, P.E., and, Berger, F., (2010) DNA methylation reprogramming during plant sexual reproduction? Trends Genet. 26, 394-399.
-
(2010)
Trends Genet.
, vol.26
, pp. 394-399
-
-
Jullien, P.E.1
Berger, F.2
-
41
-
-
84867405328
-
DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana
-
Jullien, P.E., Susaki, D., Yelagandula, R., et al. (2012) DNA methylation dynamics during sexual reproduction in Arabidopsis thaliana. Curr. Biol. 22, 1825-1830.
-
(2012)
Curr. Biol.
, vol.22
, pp. 1825-1830
-
-
Jullien, P.E.1
Susaki, D.2
Yelagandula, R.3
-
42
-
-
0029861897
-
Developmental abnormalities and epimutations associated with DNA hypomethylation mutations
-
Kakutani, T., Jeddeloh, J.A., Flowers, S.K., et al. (1996) Developmental abnormalities and epimutations associated with DNA hypomethylation mutations. Proc. Natl Acad. Sci. USA, 93, 12406-12411.
-
(1996)
Proc. Natl Acad. Sci. USA
, vol.93
, pp. 12406-12411
-
-
Kakutani, T.1
Jeddeloh, J.A.2
Flowers, S.K.3
-
43
-
-
77950500412
-
Orchestration of floral initiation by APETALA1
-
Kaufmann, K., Wellmer, F., Muino, J.M., et al. (2010) Orchestration of floral initiation by APETALA1. Science, 328, 85-89.
-
(2010)
Science
, vol.328
, pp. 85-89
-
-
Kaufmann, K.1
Wellmer, F.2
Muino, J.M.3
-
44
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law, J.A., and, Jacobsen, S.E., (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11, 204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
45
-
-
42549090878
-
High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression
-
Li, X., Wang, X., He, K., et al. (2008) High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression. Plant Cell, 20, 259-276.
-
(2008)
Plant Cell
, vol.20
, pp. 259-276
-
-
Li, X.1
Wang, X.2
He, K.3
-
46
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman, Z., Gendrel, A.V., Black, M., et al. (2004) Role of transposable elements in heterochromatin and epigenetic control. Nature, 430, 471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.1
Gendrel, A.V.2
Black, M.3
-
47
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister, R., O'Malley, R.C., Tonti-Filippini, J., et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell, 133, 523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
-
48
-
-
20444391729
-
Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants
-
Ma, H., (2005) Molecular genetic analyses of microsporogenesis and microgametogenesis in flowering plants. Annu. Rev. Plant Biol. 56, 393-434.
-
(2005)
Annu. Rev. Plant Biol.
, vol.56
, pp. 393-434
-
-
Ma, H.1
-
49
-
-
0036911605
-
Distribution and characterization of regulatory elements in the human genome
-
Majewski, J., and, Ott, J., (2002) Distribution and characterization of regulatory elements in the human genome. Genome Res. 12, 1827-1836.
-
(2002)
Genome Res.
, vol.12
, pp. 1827-1836
-
-
Majewski, J.1
Ott, J.2
-
50
-
-
0035839055
-
DNA methylation and epigenetic inheritance in plants and filamentous fungi
-
Martienssen, R.A., and, Colot, V., (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science, 293, 1070-1074.
-
(2001)
Science
, vol.293
, pp. 1070-1074
-
-
Martienssen, R.A.1
Colot, V.2
-
51
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
Mette, M.F., Aufsatz, W., van der Winden, J., et al. (2000) Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J. 19, 5194-5201.
-
(2000)
EMBO J.
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
Van Der Winden, J.3
-
52
-
-
0026649411
-
Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity
-
Mizukami, Y., and, Ma, H., (1992) Ectopic expression of the floral homeotic gene AGAMOUS in transgenic Arabidopsis plants alters floral organ identity. Cell, 71, 119-131.
-
(1992)
Cell
, vol.71
, pp. 119-131
-
-
Mizukami, Y.1
Ma, H.2
-
53
-
-
0030087727
-
Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity
-
Park, Y.D., Papp, I., Moscone, E.A., et al. (1996) Gene silencing mediated by promoter homology occurs at the level of transcription and results in meiotically heritable alterations in methylation and gene activity. Plant J. 9, 183-194.
-
(1996)
Plant J.
, vol.9
, pp. 183-194
-
-
Park, Y.D.1
Papp, I.2
Moscone, E.A.3
-
54
-
-
0034636418
-
B and C floral organ identity functions require SEPALLATA MADS-box genes
-
Pelaz, S., Ditta, G.S., Baumann, E., et al. (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature, 405, 200-203.
-
(2000)
Nature
, vol.405
, pp. 200-203
-
-
Pelaz, S.1
Ditta, G.S.2
Baumann, E.3
-
55
-
-
0029765771
-
Demethylation-induced developmental pleiotropy in Arabidopsis
-
Ronemus, M.J., Galbiati, M., Ticknor, C., et al. (1996) Demethylation-induced developmental pleiotropy in Arabidopsis. Science, 273, 654-657.
-
(1996)
Science
, vol.273
, pp. 654-657
-
-
Ronemus, M.J.1
Galbiati, M.2
Ticknor, C.3
-
56
-
-
26444479664
-
DNA methylation increases throughout Arabidopsis development
-
Ruiz-Garcia, L., Cervera, M.T., and, Martinez-Zapater, J.M., (2005) DNA methylation increases throughout Arabidopsis development. Planta, 222, 301-306.
-
(2005)
Planta
, vol.222
, pp. 301-306
-
-
Ruiz-Garcia, L.1
Cervera, M.T.2
Martinez-Zapater, J.M.3
-
57
-
-
84874991260
-
Patterns of population epigenomic diversity
-
Schmitz, R.J., Schultz, M.D., Urich, M.A., et al. (2013) Patterns of population epigenomic diversity. Nature, 495, 193-198.
-
(2013)
Nature
, vol.495
, pp. 193-198
-
-
Schmitz, R.J.1
Schultz, M.D.2
Urich, M.A.3
-
58
-
-
78649596173
-
Merged consensus clustering to assess and improve class discovery with microarray data
-
Simpson, T.I., Armstrong, J.D., and, Jarman, A.P., (2010) Merged consensus clustering to assess and improve class discovery with microarray data. BMC Bioinformatics, 11, 590.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 590
-
-
Simpson, T.I.1
Armstrong, J.D.2
Jarman, A.P.3
-
59
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin, R.K., Vaughn, M., Borges, F., et al. (2009) Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell, 136, 461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.2
Borges, F.3
-
60
-
-
84888000150
-
Sexual dimorphic floral development in dioecious plants revealed by transcriptome, phytohormone, and DNA methylation analysis in Populus tomentosa
-
Song, Y., Ma, K., Ci, D., et al. (2013) Sexual dimorphic floral development in dioecious plants revealed by transcriptome, phytohormone, and DNA methylation analysis in Populus tomentosa. Plant Mol. Biol. 83, 559-576.
-
(2013)
Plant Mol. Biol.
, vol.83
, pp. 559-576
-
-
Song, Y.1
Ma, K.2
Ci, D.3
-
61
-
-
0033637356
-
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene
-
Soppe, W.J., Jacobsen, S.E., Alonso-Blanco, C., et al. (2000) The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol. Cell, 6, 791-802.
-
(2000)
Mol. Cell
, vol.6
, pp. 791-802
-
-
Soppe, W.J.1
Jacobsen, S.E.2
Alonso-Blanco, C.3
-
62
-
-
3843094797
-
Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development
-
Sridhar, V.V., Surendrarao, A., Gonzalez, D., et al. (2004) Transcriptional repression of target genes by LEUNIG and SEUSS, two interacting regulatory proteins for Arabidopsis flower development. Proc. Natl Acad. Sci. USA, 101, 11494-11499.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 11494-11499
-
-
Sridhar, V.V.1
Surendrarao, A.2
Gonzalez, D.3
-
63
-
-
0031796374
-
Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: Implications for posttranscriptional silencing of homologous host genes in plants
-
Stam, M., Viterbo, A., Mol, J.N., et al. (1998) Position-dependent methylation and transcriptional silencing of transgenes in inverted T-DNA repeats: implications for posttranscriptional silencing of homologous host genes in plants. Mol. Cell. Biol. 18, 6165-6177.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 6165-6177
-
-
Stam, M.1
Viterbo, A.2
Mol, J.N.3
-
64
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud, H., Do, T., Du, J., et al. (2014) Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat. Struct. Mol. Biol. 21, 64-72.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
-
65
-
-
43749098985
-
DNA methylation landscapes: Provocative insights from epigenomics
-
Suzuki, M.M., and, Bird, A., (2008) DNA methylation landscapes: provocative insights from epigenomics. Nat. Rev. Genet. 9, 465-476.
-
(2008)
Nat. Rev. Genet.
, vol.9
, pp. 465-476
-
-
Suzuki, M.M.1
Bird, A.2
-
66
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L., and, Salzberg, S.L., (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
67
-
-
33746591797
-
Genome-wide analysis of gene expression during early Arabidopsis flower development
-
Wellmer, F., Alves-Ferreira, M., Dubois, A., et al. (2006) Genome-wide analysis of gene expression during early Arabidopsis flower development. PLoS Genet. 2, e117.
-
(2006)
PLoS Genet.
, vol.2
, pp. e117
-
-
Wellmer, F.1
Alves-Ferreira, M.2
Dubois, A.3
-
68
-
-
50849106398
-
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis
-
Woo, H.R., Dittmer, T.A., and, Richards, E.J., (2008) Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet. 4, e1000156.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000156
-
-
Woo, H.R.1
Dittmer, T.A.2
Richards, E.J.3
-
69
-
-
84865176413
-
Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA
-
Wuest, S.E., O'Maoileidigh, D.S., Rae, L., et al. (2012) Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA. Proc. Natl Acad. Sci. USA, 109, 13452-13457.
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 13452-13457
-
-
Wuest, S.E.1
O'Maoileidigh, D.S.2
Rae, L.3
-
70
-
-
33745466921
-
DNA methylation is critical for Arabidopsis embryogenesis and seed viability
-
Xiao, W., Custard, K.D., Brown, R.C., et al. (2006) DNA methylation is critical for Arabidopsis embryogenesis and seed viability. Plant Cell, 18, 805-814.
-
(2006)
Plant Cell
, vol.18
, pp. 805-814
-
-
Xiao, W.1
Custard, K.D.2
Brown, R.C.3
-
71
-
-
79551643605
-
The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: The complexity and evolution of the meiotic process
-
Yang, H., Lu, P., Wang, Y., et al. (2011) The transcriptome landscape of Arabidopsis male meiocytes from high-throughput sequencing: the complexity and evolution of the meiotic process. Plant J. 65, 503-516.
-
(2011)
Plant J.
, vol.65
, pp. 503-516
-
-
Yang, H.1
Lu, P.2
Wang, Y.3
-
72
-
-
77952355762
-
Genome-wide evolutionary analysis of eukaryotic DNA methylation
-
Zemach, A., McDaniel, I.E., Silva, P., et al. (2010) Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science, 328, 916-919.
-
(2010)
Science
, vol.328
, pp. 916-919
-
-
Zemach, A.1
McDaniel, I.E.2
Silva, P.3
-
73
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang, X., Yazaki, J., Sundaresan, A., et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell, 126, 1189-1201.
-
(2006)
Cell
, vol.126
, pp. 1189-1201
-
-
Zhang, X.1
Yazaki, J.2
Sundaresan, A.3
-
74
-
-
77956500617
-
A unique family of Mrr-like modification-dependent restriction endonucleases
-
Zheng, Y., Cohen-Karni, D., Xu, D., et al. (2010) A unique family of Mrr-like modification-dependent restriction endonucleases. Nucleic Acids Res. 38, 5527-5534.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 5527-5534
-
-
Zheng, Y.1
Cohen-Karni, D.2
Xu, D.3
-
75
-
-
84873587727
-
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
-
Zhong, S., Fei, Z., Chen, Y.R., et al. (2013) Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat. Biotechnol. 31, 154-159.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 154-159
-
-
Zhong, S.1
Fei, Z.2
Chen, Y.R.3
-
76
-
-
3142640878
-
Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats
-
Zilberman, D., Cao, X., Johansen, L.K., et al. (2004) Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr. Biol. 14, 1214-1220.
-
(2004)
Curr. Biol.
, vol.14
, pp. 1214-1220
-
-
Zilberman, D.1
Cao, X.2
Johansen, L.K.3
-
77
-
-
33845880624
-
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
-
Zilberman, D., Gehring, M., Tran, R. K., et al. (2007) Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat. Genet. 39, 61-69.
-
(2007)
Nat. Genet.
, vol.39
, pp. 61-69
-
-
Zilberman, D.1
Gehring, M.2
Tran, R.K.3
|