-
1
-
-
84878941023
-
Signal recognition particle: an essential protein-targeting machine
-
Akopian, D., Shen, K., Zhang, X., and Shan, S.O. (2013) Signal recognition particle: an essential protein-targeting machine. Annu Rev Biochem 82: 693-721.
-
(2013)
Annu Rev Biochem
, vol.82
, pp. 693-721
-
-
Akopian, D.1
Shen, K.2
Zhang, X.3
Shan, S.O.4
-
2
-
-
58249094402
-
Analysis of mRNA decay in Bacillus subtilis
-
Bechhofer, D.H., Oussenko, I.A., Deikus, G., Yao, S., Mathy, N., and Condon, C. (2008) Analysis of mRNA decay in Bacillus subtilis. Methods Enzymol 447: 259-276.
-
(2008)
Methods Enzymol
, vol.447
, pp. 259-276
-
-
Bechhofer, D.H.1
Oussenko, I.A.2
Deikus, G.3
Yao, S.4
Mathy, N.5
Condon, C.6
-
3
-
-
33845719997
-
Maturation of the 5′ end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1
-
Britton, R.A., Wen, T., Schaefer, L., Pellegrini, O., Uicker, W.C., Mathy, N., etal. (2007) Maturation of the 5′ end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol Microbiol 63: 127-138.
-
(2007)
Mol Microbiol
, vol.63
, pp. 127-138
-
-
Britton, R.A.1
Wen, T.2
Schaefer, L.3
Pellegrini, O.4
Uicker, W.C.5
Mathy, N.6
-
4
-
-
67650514021
-
Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing
-
Commichau, F.M., Rothe, F.M., Herzberg, C., Wagner, E., Hellwig, D., Lehnik-Habrink, M., etal. (2009) Novel activities of glycolytic enzymes in Bacillus subtilis: interactions with essential proteins involved in mRNA processing. Mol Cell Proteomics 8: 1350-1360.
-
(2009)
Mol Cell Proteomics
, vol.8
, pp. 1350-1360
-
-
Commichau, F.M.1
Rothe, F.M.2
Herzberg, C.3
Wagner, E.4
Hellwig, D.5
Lehnik-Habrink, M.6
-
5
-
-
0035257090
-
Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function
-
Condon, C., Brechemier-Baey, D., Beltchev, B., Grunberg-Manago, M., and Putzer, H. (2001) Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: mature 5S rRNA is dispensable for ribosome function. RNA 7: 242-253.
-
(2001)
RNA
, vol.7
, pp. 242-253
-
-
Condon, C.1
Brechemier-Baey, D.2
Beltchev, B.3
Grunberg-Manago, M.4
Putzer, H.5
-
6
-
-
84859229689
-
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
-
Durand, S., Gilet, L., Bessieres, P., Nicolas, P., and Condon, C. (2012a) Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 8: e1002520.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002520
-
-
Durand, S.1
Gilet, L.2
Bessieres, P.3
Nicolas, P.4
Condon, C.5
-
7
-
-
84872010039
-
The essential function of B.subtilis RNase III is to silence foreign toxin genes
-
Durand, S., Gilet, L., and Condon, C. (2012b) The essential function of B.subtilis RNase III is to silence foreign toxin genes. PLoS Genet 8: e1003181.
-
(2012)
PLoS Genet
, vol.8
, pp. e1003181
-
-
Durand, S.1
Gilet, L.2
Condon, C.3
-
8
-
-
84877989998
-
Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence
-
Figaro, S., Durand, S., Gilet, L., Cayet, N., Sachse, M., and Condon, C. (2013) Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence. J Bacteriol 195: 2340-2348.
-
(2013)
J Bacteriol
, vol.195
, pp. 2340-2348
-
-
Figaro, S.1
Durand, S.2
Gilet, L.3
Cayet, N.4
Sachse, M.5
Condon, C.6
-
9
-
-
84880736920
-
The task force that rescues stalled ribosomes in bacteria
-
Giudice, E., and Gillet, R. (2013) The task force that rescues stalled ribosomes in bacteria. Trends Biochem Sci 38: 403-411.
-
(2013)
Trends Biochem Sci
, vol.38
, pp. 403-411
-
-
Giudice, E.1
Gillet, R.2
-
10
-
-
33749334411
-
Analysis of RNase P protein (rnpA) expression in Bacillus subtilis utilizing strains with suppressible rnpA expression
-
Gößringer, M., Kretschmer-Kazemi Far, R., and Hartmann, R.K. (2006) Analysis of RNase P protein (rnpA) expression in Bacillus subtilis utilizing strains with suppressible rnpA expression. J Bacteriol 188: 6816-6823.
-
(2006)
J Bacteriol
, vol.188
, pp. 6816-6823
-
-
Gößringer, M.1
Kretschmer-Kazemi Far, R.2
Hartmann, R.K.3
-
11
-
-
84869093362
-
Extensive degradation of RNA precursors by the exosome in wild-type cells
-
Gudipati, R.K., Xu, Z., Lebreton, A., Seraphin, B., Steinmetz, L.M., Jacquier, A., and Libri, D. (2012) Extensive degradation of RNA precursors by the exosome in wild-type cells. Mol Cell 48: 409-421.
-
(2012)
Mol Cell
, vol.48
, pp. 409-421
-
-
Gudipati, R.K.1
Xu, Z.2
Lebreton, A.3
Seraphin, B.4
Steinmetz, L.M.5
Jacquier, A.6
Libri, D.7
-
12
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
Guerrier-Takada, C., Gardiner, K., Marsh, T., Pace, N., and Altman, S. (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35: 849-857.
-
(1983)
Cell
, vol.35
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
13
-
-
84861141850
-
PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis
-
Gutmann, B., Gobert, A., and Giege, P. (2012) PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. Genes Dev 26: 1022-1027.
-
(2012)
Genes Dev
, vol.26
, pp. 1022-1027
-
-
Gutmann, B.1
Gobert, A.2
Giege, P.3
-
14
-
-
84905228696
-
Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis
-
Guy, M.P., Young, D.L., Payea, M.J., Zhang, X., Kon, Y., Dean, K.M., etal. (2014) Identification of the determinants of tRNA function and susceptibility to rapid tRNA decay by high-throughput in vivo analysis. Genes Dev 28: 1721-1732.
-
(2014)
Genes Dev
, vol.28
, pp. 1721-1732
-
-
Guy, M.P.1
Young, D.L.2
Payea, M.J.3
Zhang, X.4
Kon, Y.5
Dean, K.M.6
-
15
-
-
0034533785
-
Endoribonuclease RNase III is essential in Bacillus subtilis
-
Herskovitz, M.A., and Bechhofer, D.H. (2000) Endoribonuclease RNase III is essential in Bacillus subtilis. Mol Microbiol 38: 1027-1033.
-
(2000)
Mol Microbiol
, vol.38
, pp. 1027-1033
-
-
Herskovitz, M.A.1
Bechhofer, D.H.2
-
16
-
-
54549088876
-
RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme
-
Holzmann, J., Frank, P., Loffler, E., Bennett, K.L., Gerner, C., and Rossmanith, W. (2008) RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme. Cell 135: 462-474.
-
(2008)
Cell
, vol.135
, pp. 462-474
-
-
Holzmann, J.1
Frank, P.2
Loffler, E.3
Bennett, K.L.4
Gerner, C.5
Rossmanith, W.6
-
17
-
-
0029765533
-
Mutational analysis of RNA structures and sequences postulated to affect 3′ processing of M1 RNA, the RNA component of Escherichia coli RNase P
-
Kim, S., Kim, H., Park, I., and Lee, Y. (1996) Mutational analysis of RNA structures and sequences postulated to affect 3′ processing of M1 RNA, the RNA component of Escherichia coli RNase P. J Biol Chem 271: 19330-19337.
-
(1996)
J Biol Chem
, vol.271
, pp. 19330-19337
-
-
Kim, S.1
Kim, H.2
Park, I.3
Lee, Y.4
-
18
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli
-
Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K., and Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91: 9223-9227.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
19
-
-
77955351104
-
The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex
-
Lehnik-Habrink, M., Pfortner, H., Rempeters, L., Pietack, N., Herzberg, C., and Stulke, J. (2010) The RNA degradosome in Bacillus subtilis: identification of CshA as the major RNA helicase in the multiprotein complex. Mol Microbiol 77: 958-971.
-
(2010)
Mol Microbiol
, vol.77
, pp. 958-971
-
-
Lehnik-Habrink, M.1
Pfortner, H.2
Rempeters, L.3
Pietack, N.4
Herzberg, C.5
Stulke, J.6
-
20
-
-
0032539857
-
3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li, Z., Pandit, S., and Deutscher, M.P. (1998a) 3′ exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95: 2856-2861.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
21
-
-
0032514754
-
Polyadenylation of stable RNA precursors in vivo
-
Li, Z., Pandit, S., and Deutscher, M.P. (1998b) Polyadenylation of stable RNA precursors in vivo. Proc Natl Acad Sci USA 95: 12158-12162.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 12158-12162
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.P.3
-
22
-
-
0036500552
-
RNA quality control: degradation of defective transfer RNA
-
Li, Z., Reimers, S., Pandit, S., and Deutscher, M.P. (2002) RNA quality control: degradation of defective transfer RNA. EMBO J 21: 1132-1138.
-
(2002)
EMBO J
, vol.21
, pp. 1132-1138
-
-
Li, Z.1
Reimers, S.2
Pandit, S.3
Deutscher, M.P.4
-
23
-
-
0033607239
-
RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
-
Lin-Chao, S., Wei, C.L., and Lin, Y.T. (1999) RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc Natl Acad Sci USA 96: 12406-12411.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12406-12411
-
-
Lin-Chao, S.1
Wei, C.L.2
Lin, Y.T.3
-
24
-
-
0033733794
-
The 3′ substrate determinants for the catalytic efficiency of the Bacillus subtilis RNase P holoenzyme suggest autolytic processing of the RNase P RNA in vivo
-
Loria, A., and Pan, T. (2000) The 3′ substrate determinants for the catalytic efficiency of the Bacillus subtilis RNase P holoenzyme suggest autolytic processing of the RNase P RNA in vivo. RNA 6: 1413-1422.
-
(2000)
RNA
, vol.6
, pp. 1413-1422
-
-
Loria, A.1
Pan, T.2
-
25
-
-
84855777772
-
Search for poly(A) polymerase targets in E.coli reveals its implication in surveillance of Glu tRNA processing and degradation of stable RNAs
-
Maes, A., Gracia, C., Hajnsdorf, E., and Regnier, P. (2012) Search for poly(A) polymerase targets in E.coli reveals its implication in surveillance of Glu tRNA processing and degradation of stable RNAs. Mol Microbiol 83: 436-451.
-
(2012)
Mol Microbiol
, vol.83
, pp. 436-451
-
-
Maes, A.1
Gracia, C.2
Hajnsdorf, E.3
Regnier, P.4
-
26
-
-
0026534528
-
10Sa RNA: processing by and inhibition of RNase III
-
Makarov, E.M., and Apirion, D. (1992) 10Sa RNA: processing by and inhibition of RNase III. Biochem Int 26: 1115-1124.
-
(1992)
Biochem Int
, vol.26
, pp. 1115-1124
-
-
Makarov, E.M.1
Apirion, D.2
-
27
-
-
34249101864
-
5′-to-3′ exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5′ stability of mRNA
-
Mathy, N., Benard, L., Pellegrini, O., Daou, R., Wen, T., and Condon, C. (2007) 5′-to-3′ exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5′ stability of mRNA. Cell 129: 681-692.
-
(2007)
Cell
, vol.129
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
28
-
-
0026517258
-
Small cytoplasmic RNA of Bacillus subtilis: functional relationship with human signal recognition particle 7S RNA and Escherichia coli 4.5S RNA
-
Nakamura, K., Imai, Y., Nakamura, A., and Yamane, K. (1992) Small cytoplasmic RNA of Bacillus subtilis: functional relationship with human signal recognition particle 7S RNA and Escherichia coli 4.5S RNA. J Bacteriol 174: 2185-2192.
-
(1992)
J Bacteriol
, vol.174
, pp. 2185-2192
-
-
Nakamura, K.1
Imai, Y.2
Nakamura, A.3
Yamane, K.4
-
29
-
-
0032584720
-
Bacillus subtilis RNase III cleaves both 5′- and 3′-sites of the small cytoplasmic RNA precursor
-
Oguro, A., Kakeshita, H., Nakamura, K., Yamane, K., Wang, W., and Bechhofer, D.H. (1998) Bacillus subtilis RNase III cleaves both 5′- and 3′-sites of the small cytoplasmic RNA precursor. J Biol Chem 273: 19542-19547.
-
(1998)
J Biol Chem
, vol.273
, pp. 19542-19547
-
-
Oguro, A.1
Kakeshita, H.2
Nakamura, K.3
Yamane, K.4
Wang, W.5
Bechhofer, D.H.6
-
30
-
-
16844379766
-
Participation of 3′-to-5′ exoribonucleases in the turnover of Bacillus subtilis mRNA
-
Oussenko, I.A., Abe, T., Ujiie, H., Muto, A., and Bechhofer, D.H. (2005) Participation of 3′-to-5′ exoribonucleases in the turnover of Bacillus subtilis mRNA. J Bacteriol 187: 2758-2767.
-
(2005)
J Bacteriol
, vol.187
, pp. 2758-2767
-
-
Oussenko, I.A.1
Abe, T.2
Ujiie, H.3
Muto, A.4
Bechhofer, D.H.5
-
31
-
-
0025826411
-
Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli
-
Peck-Miller, K.A., and Altman, S. (1991) Kinetics of the processing of the precursor to 4.5 S RNA, a naturally occurring substrate for RNase P from Escherichia coli. J Mol Biol 221: 1-5.
-
(1991)
J Mol Biol
, vol.221
, pp. 1-5
-
-
Peck-Miller, K.A.1
Altman, S.2
-
32
-
-
0043239333
-
Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis
-
Pellegrini, O., Nezzar, J., Marchfelder, A., Putzer, H., and Condon, C. (2003) Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis. EMBO J 22: 4534-4543.
-
(2003)
EMBO J
, vol.22
, pp. 4534-4543
-
-
Pellegrini, O.1
Nezzar, J.2
Marchfelder, A.3
Putzer, H.4
Condon, C.5
-
33
-
-
84867398951
-
Activation of tRNA maturation by downstream uracil residues in B.subtilis
-
Pellegrini, O., Li de la Sierra-Gallay, I., Piton, J., Gilet, L., and Condon, C. (2012) Activation of tRNA maturation by downstream uracil residues in B.subtilis. Structure 20: 1769-1777.
-
(2012)
Structure
, vol.20
, pp. 1769-1777
-
-
Pellegrini, O.1
Li de la Sierra-Gallay, I.2
Piton, J.3
Gilet, L.4
Condon, C.5
-
34
-
-
0031854048
-
PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication
-
Petit, M.-A., Dervyn, E., Rose, M., Entian, K.-D., McGovern, S., Ehrlich, D.S., and Bruand, C. (1998) PcrA is an essential DNA helicase of Bacillus subtilis fulfilling functions both in repair and rolling-circle replication. Mol Microbiol 29: 261-273.
-
(1998)
Mol Microbiol
, vol.29
, pp. 261-273
-
-
Petit, M.-A.1
Dervyn, E.2
Rose, M.3
Entian, K.-D.4
McGovern, S.5
Ehrlich, D.S.6
Bruand, C.7
-
35
-
-
43049088477
-
Life without RNase P
-
Randau, L., Schroder, I., and Soll, D. (2008) Life without RNase P. Nature 453: 120-123.
-
(2008)
Nature
, vol.453
, pp. 120-123
-
-
Randau, L.1
Schroder, I.2
Soll, D.3
-
36
-
-
43449118061
-
Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B.subtilis
-
Redko, Y., Bechhofer, D.H., and Condon, C. (2008) Mini-III, an unusual member of the RNase III family of enzymes, catalyses 23S ribosomal RNA maturation in B.subtilis. Mol Microbiol 68: 1096-1106.
-
(2008)
Mol Microbiol
, vol.68
, pp. 1096-1106
-
-
Redko, Y.1
Bechhofer, D.H.2
Condon, C.3
-
37
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
Shahbabian, K., Jamalli, A., Zig, L., and Putzer, H. (2009) RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 28: 3523-3533.
-
(2009)
EMBO J
, vol.28
, pp. 3523-3533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
38
-
-
34247863976
-
In vivo and in vitro investigation of bacterial type B RNase P interaction with tRNA 3′-CCA
-
Wegscheid, B., and Hartmann, R.K. (2007) In vivo and in vitro investigation of bacterial type B RNase P interaction with tRNA 3′-CCA. Nucleic Acids Res 35: 2060-2073.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 2060-2073
-
-
Wegscheid, B.1
Hartmann, R.K.2
-
39
-
-
33645512683
-
Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences
-
Wegscheid, B., Condon, C., and Hartmann, R.K. (2006) Type A and B RNase P RNAs are interchangeable in vivo despite substantial biophysical differences. EMBO Rep 7: 411-417.
-
(2006)
EMBO Rep
, vol.7
, pp. 411-417
-
-
Wegscheid, B.1
Condon, C.2
Hartmann, R.K.3
-
40
-
-
21244498581
-
Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis
-
Wen, T., Oussenko, I.A., Pellegrini, O., Bechhofer, D.H., and Condon, C. (2005) Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis. Nucleic Acids Res 33: 3636-3643.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3636-3643
-
-
Wen, T.1
Oussenko, I.A.2
Pellegrini, O.3
Bechhofer, D.H.4
Condon, C.5
-
41
-
-
34547842522
-
Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site
-
Yao, S., Blaustein, J.B., and Bechhofer, D.H. (2007) Processing of Bacillus subtilis small cytoplasmic RNA: evidence for an additional endonuclease cleavage site. Nucleic Acids Res 35: 4464-4473.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4464-4473
-
-
Yao, S.1
Blaustein, J.B.2
Bechhofer, D.H.3
-
42
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
|