Identification of the gene encoding the 5S ribosomal RNA maturase in Bacillus subtilis: Mature 5S rRNA is dispensable for ribosome function

RNA

Volumn 7, Issue 2, 2001, Pages 242-253

  Condon, Ciarán ^a   Brechemier Baey, Dominique ^a   Beltchev, Beltcho ^a   Grunberg Manago, Marianne ^a   Putzer, Harald ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

5S rRNA processing; Bacillus subtilis; Ribonuclease M5; Ribosomal RNA; RNase E

Indexed keywords

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FIRMICUTES; NEGIBACTERIA; POSIBACTERIA;

BACTERIAL RNA; MESSENGER RIBONUCLEIC ACID MATURASE; NUCLEOTIDYLTRANSFERASE; PRIMER DNA; RIBONUCLEASE; RIBONUCLEASE E; RIBONUCLEASE M5; RNA 5S; RNA PRECURSOR;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS SUBTILIS; BASE PAIRING; CELL NUCLEUS; CELL SURVIVAL; CHEMISTRY; COMPARATIVE STUDY; GENETICS; METABOLISM; MOLECULAR GENETICS; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; RIBOSOME; RNA PROCESSING; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACILLUS SUBTILIS; BASE PAIRING; BASE SEQUENCE; BLOTTING, NORTHERN; CELL NUCLEUS; CELL SURVIVAL; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ENDORIBONUCLEASES; MOLECULAR SEQUENCE DATA; NUCLEOTIDYLTRANSFERASES; POLYMERASE CHAIN REACTION; RIBOSOMES; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, BACTERIAL; RNA, RIBOSOMAL, 5S; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0035257090     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838201002163     Document Type: Article

References (40)

1. Apirion D, Lassar AB. 1978. A conditional lethal mutant of Escherichia coli which affects processing of ribosomal RNA. J Biol Chem 253:1738-1742.
2. Bremer H, Dennis PP. 1987. Modulation of chemical composition and other parameters of the cell by growth rate. In: Neidhardt FC, Ingraham JL, Lin ECC, Low KB, Magasanik B, Schaechter M, Umbarger HE, eds. Escherichia coli and Salmonella typhimurium. Cellular and molecular biology. Washington, DC: American Society for Microbiology, pp 1527-1542.
3. Ceccarelli A, Dotto GP, Altruda F, Perlo C, Silengo L, Turco E, Mangiarotti G. 1978. Immature 50 S subunits in Escherichia coli polyribosomes. FEBS Lett 93:348-350.
4. Condon C, Putzer H, Luo D, Grunberg-Manago M. 1997. Processing of the Bacillus subtilis thrS leader mRNA is RNase E-dependent in Escherichia coli. J Mol Biol 268:235-242.
5. Cormack RS, Mackie GA. 1992. Structural requirements for the processing of Escherichia coli 5 S ribosomal RNA by RNAse E in vitro. J Mol Biol 228:1078-1090.
6. Douthwaite S, Garrett RA, Wagner R, Feunteun J. 1979. A ribonuclease-resistant region of 5S RNA and its relation to the RNA binding sites of proteins L18 and L25. Nucleic Acids Res 6: 2453-2470.
7. Egebjerg J, Christiansen J, Brown RS, Larsen N, Garrett RA. 1989. Protein L18 binds primarily at the junctions of helix II and internal loops A and B in Escherichia coli 5S RNA. Implications for 5S RNA structure. J Mol Biol 206:651-668.
8. Feunteun J, Jordan BR, Monier R. 1972. Study of the maturation of 5S RNA precursors in Escherichia coli. J Mol Biol 70:465-474.
9. Fox GW, Woese CR. 1975. 5S RNA secondary structure. Nature 256:505-507.
10. Ghora BK, Apirion D. 1978. Structural analysis and in vitro processing to p5S rRNA of a 9S RNA molecule isolated from an me mutant of E. coli. Cell 15:1055-1066.
11. Ghosh S, Deutscher MP. 1999. Oligoribonuclease is an essential component of the mRNA decay pathway. Proc Natl Acad Sci USA 96:4372-4377.
12. Gould H, Herbert BN, Loviny T. 1969. Polysomes from Bacillus subtilis and Bacillus thuringiensis. Nature 223:855-857.
13. Gray PN, Garrett RA, Stoffler G, Monier R. 1972. An attempt at the identification of the proteins involved in the incorporation of 5S RNA during 50S ribosomal subunit assembly. Eur J Biochem 28:412-421.
14. Grunberg-Manago M. 1999. Messenger RNA stability and its role in control of gene expression in bacteria and phages. Annu Rev Genet 33:193-227.
15. Hagege JM, Cohen SN. 1997. A developmentally regulated Streptomyces endoribonuclease resembles ribonuclease E of Escherichia coli. Mol Microbiol 25:1077-1090.
16. Helser TL, Davies JE, Dahlberg JE. 1971. Change in methylation of 16S ribosomal RNA associated with mutation to kasugamycin resistance in Escherichia coli. Nature New Biol 233:12-14.
17. Jaxel C, Duguet M, Nadal M. 1999. Analysis of DNA cleavage by reverse gyrase from Sulfolobus shibatae B12. Eur J Biochem 260:103-111.
18. Khaitovich P, Mankin AS. 1999. Effect of antibiotics on large ribosomal subunit assembly reveals possible function of 5 S rRNA. J Mol Biol 291:1025-1034.
19. Lazinski D, Grzadzielska E, Das A. 1989. Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif. Cell 59:207-218.
20. Li Z, Deutscher MP. 1994. The role of individual exoribonucleases in processing at the 3′ end of Escherichia coli tRNA precursors. J Biol Chem 269:6064-6071.
21. Li Z, Deutscher MP. 1995. The tRNA processing enzyme RNase T is essential for maturation of 5S rRNA. Proc Natl Acad Sci USA 92:6883-6886.
22. Li Z, Pandit S, Deutscher MP. 1999. RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J 18:2878-2885.
23. Mangiarotti G, Turco E, Ponzetto A, Altruda F. 1974. Precursor 16S RNA in active 30S ribosomes. Nature 247:147-148.
24. Mayford M, Weisblum B. 1989. Conformational alterations in the ermC transcript in vivo during induction. EMBO J 8:4307-4314.
25. Meyhack B, Pace NR. 1978. Involvement of the mature domain in the in vitro maturation of Bacillus subtilis precursor 5S ribosomal RNA. Biochemistry 17:5804-5809.
26. Meyhack B, Pace B, Uhlenbeck OC, Pace NR. 1978. Use of T4 RNA ligase to construct model substrates for a ribosomal RNA maturation endonuclease. Proc Natl Acad Sci USA 75:3045-3049.
27. Ono M, Kuwano M. 1979. A conditional lethal mutation in an E. coli strain with a longer chemical lifetime of messenger RNA. J Mol Biol 129:343-357.
28. Pace NR, Pace B. 1990. Ribosomal RNA terminal maturase: Ribonuclease M5 from Bacillus subtilis. Methods Enzymol 181:366-374.
29. Pace B, Stahl DA, Pace NR. 1984. The catalytic element of a ribosomal RNA-processing complex. J Biol Chem 259:11454-11458.
30. Sogin ML, Pace NR. 1974. In vitro maturation of precursors of 5S ribosomal RNA from Bacillus subtilis. Nature 252:598-600.
31. Sogin ML, Pace NR. 1976. Nucleotide sequence of 5S ribosomal RNA precursor from Bacillus subtilis. J Biol Chem 251:3480-3488.
32. Srivastava AK, Schlessinger D. 1988. Coregulation of processing and translation: Mature 5′ termini of Escherichia coli 23S ribosomal RNA form in polysomes. Proc Natl Acad Sci USA 85: 7144-7148.
33. Stahl DA, Meyhack B, Pace NR. 1980. Recognition of local nucleotide conformation in contrast to sequence by a rRNA processing endonuclease. Proc Natl Acad Sci USA 77:5644-5648.
34. Stahl DA, Pace B, Marsh T, Pace NR. 1984. The ribonucleoprotein substrate for a ribosomal RNA-processing nuclease. J Biol Chem 259:11448-11453.
35. Stiekema WJ, de Leede-Twente R, Raue HA, Planta RJ. 1980a. Nucleotide sequence analysis of precursor 5S RNA from Bacillus licheniformis. Nucleic Acids Res 8:4535-4541.
36. Stiekema WJ, Raue HA, Planta RJ. 1980b. Sequence analysis and in vitro maturation of five precursor 5S RNAs from Bacillus Q. Nucleic Acids Res 8:2193-2211.
37. Szewczyk B, Summers DF. 1988. Preparative elution of proteins blotted to Immobilon membranes. Anal Biochem 168:48-53.
38. Tock MR, Walsh AP, Carroll G, McDowall KJ. 2000. The CafA protein required for the 5′-maturation of 16 S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J Biol Chem 275:8726-8732.
39. Vagner V, Dervyn E, Ehrlich SD. 1998. A vector for systematic gene inactivation in Bacillus subtilis. Microbiology 144:3097-3104.
40. Varshney U, Lee CP, RajBhandary UL. 1991. Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase. J Biol Chem 266:24712-24718.