-
1
-
-
33745631476
-
Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives
-
Savichtcheva O, Okabe S, (2006) Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives. Water Res 40: 2463–2476.
-
(2006)
Water Res
, vol.40
, pp. 2463-2476
-
-
Savichtcheva, O.1
Okabe, S.2
-
3
-
-
0038691961
-
Do U.S. Environmental Protection Agency water quality guidelines for recreational waters prevent gastrointestinal illness? A systematic review and meta-analysis
-
Wade TJ, Pai N, Eisenberg JN, Colford JM, Jr (2003) Do U.S. Environmental Protection Agency water quality guidelines for recreational waters prevent gastrointestinal illness? A systematic review and meta-analysis. Environ Health Perspect 111: 1102–1109.
-
(2003)
Environ Health Perspect
, vol.111
, pp. 1102-1109
-
-
Wade, T.J.1
Pai, N.2
Eisenberg, J.N.3
Colford, J.M.4
-
4
-
-
79958706978
-
Are microbial indicators and pathogens correlated? A statistical analysis of 40 years of research
-
Wu J, Long SC, Das D, Dorner SM, (2011) Are microbial indicators and pathogens correlated? A statistical analysis of 40 years of research. J Water Health 9: 265–278.
-
(2011)
J Water Health
, vol.9
, pp. 265-278
-
-
Wu, J.1
Long, S.C.2
Das, D.3
Dorner, S.M.4
-
5
-
-
0016155986
-
Comparative survival of indicator bacteria and enteric pathogens in well water
-
McFeters GA, Bissonnette GK, Jezeski JJ, Thomson CA, Stuart DG, (1974) Comparative survival of indicator bacteria and enteric pathogens in well water. Appl Microbiol 27: 823–829.
-
(1974)
Appl Microbiol
, vol.27
, pp. 823-829
-
-
McFeters, G.A.1
Bissonnette, G.K.2
Jezeski, J.J.3
Thomson, C.A.4
Stuart, D.G.5
-
6
-
-
0347761194
-
Campylobacter spp., Giardia spp., Cryptosporidium spp., noroviruses, and indicator organisms in surface water in southwestern Finland, 2000–2001
-
Horman A, Rimhanen-Finne R, Maunula L, von Bonsdorff CH, Torvela N, et al. (2004) Campylobacter spp., Giardia spp., Cryptosporidium spp., noroviruses, and indicator organisms in surface water in southwestern Finland, 2000–2001. Appl Environ Microbiol 70: 87–95.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 87-95
-
-
Horman, A.1
Rimhanen-Finne, R.2
Maunula, L.3
von Bonsdorff, C.H.4
Torvela, N.5
-
7
-
-
0037817453
-
Role of nonhost environments in the lifestyles of Salmonella and Escherichia coli
-
Winfield MD, Groisman EA, (2003) Role of nonhost environments in the lifestyles of Salmonella and Escherichia coli. Appl Environ Microbiol 69: 3687–3694.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3687-3694
-
-
Winfield, M.D.1
Groisman, E.A.2
-
8
-
-
84891630221
-
Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes
-
Harwood VJ, Staley C, Badgley BD, Borges K, Korajkic A, (2013) Microbial source tracking markers for detection of fecal contamination in environmental waters: relationships between pathogens and human health outcomes. FEMS Microbiol Rev 38: 1–40.
-
(2013)
FEMS Microbiol Rev
, vol.38
, pp. 1-40
-
-
Harwood, V.J.1
Staley, C.2
Badgley, B.D.3
Borges, K.4
Korajkic, A.5
-
9
-
-
34547476651
-
Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution
-
Santo Domingo JW, Bambic DG, Edge TA, Wuertz S, (2007) Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. Water Res 41: 3539–3552.
-
(2007)
Water Res
, vol.41
, pp. 3539-3552
-
-
Santo Domingo, J.W.1
Bambic, D.G.2
Edge, T.A.3
Wuertz, S.4
-
10
-
-
0347928647
-
Molecular approaches to microbiological monitoring: fecal source detection
-
Field KG, Bernhard AE, Brodeur TJ, (2003) Molecular approaches to microbiological monitoring: fecal source detection. Environ Monit Assess 81: 313–326.
-
(2003)
Environ Monit Assess
, vol.81
, pp. 313-326
-
-
Field, K.G.1
Bernhard, A.E.2
Brodeur, T.J.3
-
12
-
-
79952574163
-
State of the art molecular markers for fecal pollution source tracking in water
-
Roslev P, Bukh AS, (2011) State of the art molecular markers for fecal pollution source tracking in water. Appl Microbiol Biotechnol 89: 1341–1355.
-
(2011)
Appl Microbiol Biotechnol
, vol.89
, pp. 1341-1355
-
-
Roslev, P.1
Bukh, A.S.2
-
13
-
-
0033774937
-
A PCR assay To discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard AE, Field KG, (2000) A PCR assay To discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl Environ Microbiol 66: 4571–4574.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
14
-
-
84887163231
-
Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study
-
Layton BA, Cao Y, Ebentier DL, Hanley K, Balleste E, et al. (2013) Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study. Water Res 47: 6897–6908.
-
(2013)
Water Res
, vol.47
, pp. 6897-6908
-
-
Layton, B.A.1
Cao, Y.2
Ebentier, D.L.3
Hanley, K.4
Balleste, E.5
-
15
-
-
84881436427
-
Performance characteristics of qPCR assays targeting human- and ruminant-associated bacteroidetes for microbial source tracking across sixteen countries on six continents
-
Reischer GH, Ebdon JE, Bauer JM, Schuster N, Ahmed W, et al. (2013) Performance characteristics of qPCR assays targeting human- and ruminant-associated bacteroidetes for microbial source tracking across sixteen countries on six continents. Environ Sci Technol 47: 8548–8556.
-
(2013)
Environ Sci Technol
, vol.47
, pp. 8548-8556
-
-
Reischer, G.H.1
Ebdon, J.E.2
Bauer, J.M.3
Schuster, N.4
Ahmed, W.5
-
16
-
-
84875779977
-
Schistosomiasis: number of people treated in 2011
-
WHO (2013) Schistosomiasis: number of people treated in 2011. Wkly Epidemiol Rec 88: 81–88.
-
(2013)
Wkly Epidemiol Rec
, vol.88
, pp. 81-88
-
-
-
18
-
-
85015522114
-
-
National Secretariate of Environmental Sanitation (2013) National System of Sanitation Information (SNIS).
-
-
-
-
19
-
-
33748757526
-
Human schistosomiasis
-
Gryseels B, Polman K, Clerinx J, Kestens L, (2006) Human schistosomiasis. Lancet 368: 1106–1118.
-
(2006)
Lancet
, vol.368
, pp. 1106-1118
-
-
Gryseels, B.1
Polman, K.2
Clerinx, J.3
Kestens, L.4
-
20
-
-
84883744033
-
Elucidating the temporal and spatial dynamics of Biomphalaria glabrata genetic diversity in three Brazilian villages
-
Thiele EA, Correa-Oliveira G, Gazzinelli A, Minchella DJ, (2013) Elucidating the temporal and spatial dynamics of Biomphalaria glabrata genetic diversity in three Brazilian villages. Trop Med Int Health 18: 1164–1173.
-
(2013)
Trop Med Int Health
, vol.18
, pp. 1164-1173
-
-
Thiele, E.A.1
Correa-Oliveira, G.2
Gazzinelli, A.3
Minchella, D.J.4
-
21
-
-
84892776903
-
Characteristics of the human host have little influence on which local Schistosoma mansoni populations are acquired
-
Barbosa LM, Silva LK, Reis EA, Azevedo TM, Costa JM, et al. (2013) Characteristics of the human host have little influence on which local Schistosoma mansoni populations are acquired. PLoS Negl Trop Dis 7: e2572.
-
(2013)
PLoS Negl Trop Dis
, vol.7
, pp. e2572
-
-
Barbosa, L.M.1
Silva, L.K.2
Reis, E.A.3
Azevedo, T.M.4
Costa, J.M.5
-
22
-
-
79961166881
-
Schistosoma mansoni population structure and persistence after praziquantel treatment in two villages of Bahia, Brazil
-
Blanton RE, Blank WA, Costa JM, Carmo TM, Reis EA, et al. (2011) Schistosoma mansoni population structure and persistence after praziquantel treatment in two villages of Bahia, Brazil. Int J Parasitol 41: 1093–1099.
-
(2011)
Int J Parasitol
, vol.41
, pp. 1093-1099
-
-
Blanton, R.E.1
Blank, W.A.2
Costa, J.M.3
Carmo, T.M.4
Reis, E.A.5
-
23
-
-
0015423525
-
A simple device for quantitative stool thick smear technique in schistosomiasis mansoni
-
Katz N, Chavez A, Pellegrino J, (1972) A simple device for quantitative stool thick smear technique in schistosomiasis mansoni. Rev Inst Med Trop Sao Paulo 14: 397–400.
-
(1972)
Rev Inst Med Trop Sao Paulo
, vol.14
, pp. 397-400
-
-
Katz, N.1
Chavez, A.2
Pellegrino, J.3
-
24
-
-
85015529257
-
-
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, et al., editors (1987) Current protocols in molecular biology. New York, NY: Green Publishing Associates and Wiley Inter-science.
-
(1987)
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
-
25
-
-
84896753991
-
A filtering method to generate high quality short reads using illumina paired-end technology
-
Eren AM, Vineis JH, Morrison HG, Sogin ML, (2013) A filtering method to generate high quality short reads using illumina paired-end technology. PLoS One 8: e66643.
-
(2013)
PLoS One
, vol.8
, pp. e66643
-
-
Eren, A.M.1
Vineis, J.H.2
Morrison, H.G.3
Sogin, M.L.4
-
26
-
-
84893161170
-
VAMPS: a website for visualization and analysis of microbial population structures
-
Huse SM, Mark Welch DB, Voorhis A, Shipunova A, Morrison HG, et al. (2014) VAMPS: a website for visualization and analysis of microbial population structures. BMC Bioinformatics 15: 41.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 41
-
-
Huse, S.M.1
Mark Welch, D.B.2
Voorhis, A.3
Shipunova, A.4
Morrison, H.G.5
-
27
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse SM, Dethlefsen L, Huber JA, Mark Welch D, Relman DA, et al. (2008) Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet 4: e1000255.
-
(2008)
PLoS Genet
, vol.4
, pp. e1000255
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Mark Welch, D.4
Relman, D.A.5
-
28
-
-
85015520353
-
Prevotella and Blautia sequences track general and human fecal pollution sources in Brazilian surface waters
-
Koskey AM, Fisher JC, Eren AM, Ponce Terashima R, Reis MG, et al. (2014) Prevotella and Blautia sequences track general and human fecal pollution sources in Brazilian surface waters. Environmental Microbiology and Environmental Microbiology Reports In press.
-
(2014)
Environmental Microbiology and Environmental Microbiology Reports
-
-
Koskey, A.M.1
Fisher, J.C.2
Eren, A.M.3
Ponce Terashima, R.4
Reis, M.G.5
-
29
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403–410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
30
-
-
56949085868
-
The effect of the number of stool samples on the observed prevalence and the infection intensity with Schistosoma mansoni among a population in an area of low transmission
-
Enk MJ, Lima AC, Drummond SC, Schall VT, Coelho PM, (2008) The effect of the number of stool samples on the observed prevalence and the infection intensity with Schistosoma mansoni among a population in an area of low transmission. Acta Trop 108: 222–228.
-
(2008)
Acta Trop
, vol.108
, pp. 222-228
-
-
Enk, M.J.1
Lima, A.C.2
Drummond, S.C.3
Schall, V.T.4
Coelho, P.M.5
-
31
-
-
77649110123
-
Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent
-
McLellan SL, Huse SM, Mueller-Spitz SR, Andreishcheva EN, Sogin ML, (2010) Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent. Environ Microbiol 12: 378–392.
-
(2010)
Environ Microbiol
, vol.12
, pp. 378-392
-
-
McLellan, S.L.1
Huse, S.M.2
Mueller-Spitz, S.R.3
Andreishcheva, E.N.4
Sogin, M.L.5
-
32
-
-
84865790893
-
Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure
-
Vandewalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, et al. (2012) Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure. Environ Microbiol 14: 2538–2552.
-
(2012)
Environ Microbiol
, vol.14
, pp. 2538-2552
-
-
Vandewalle, J.L.1
Goetz, G.W.2
Huse, S.M.3
Morrison, H.G.4
Sogin, M.L.5
-
33
-
-
43449093424
-
Presence of Arcobacter spp. in environmental waters correlates with high levels of fecal pollution
-
Collado L, Inza I, Guarro J, Figueras MJ, (2008) Presence of Arcobacter spp. in environmental waters correlates with high levels of fecal pollution. Environ Microbiol 10: 1635–1640.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1635-1640
-
-
Collado, L.1
Inza, I.2
Guarro, J.3
Figueras, M.J.4
-
34
-
-
67651028302
-
DNA-based real-time detection and quantification of aeromonads from fresh water beaches on Lake Ontario
-
Khan IU, Loughborough A, Edge TA, (2009) DNA-based real-time detection and quantification of aeromonads from fresh water beaches on Lake Ontario. J Water Health 7: 312–323.
-
(2009)
J Water Health
, vol.7
, pp. 312-323
-
-
Khan, I.U.1
Loughborough, A.2
Edge, T.A.3
-
35
-
-
0025832055
-
Comamonadaceae, a New Family Encompassing the Acidovorans rRNA Complex, Including Variovorax paradoxus gen. nov., comb. nov. for Alcaligenes paradoxus (Davis 1969)
-
Willems A, De Ley J, Gillis M, Kersters K, (1991) Comamonadaceae, a New Family Encompassing the Acidovorans rRNA Complex, Including Variovorax paradoxus gen. nov., comb. nov. for Alcaligenes paradoxus (Davis 1969). International Journal of Systematic Bacteriology 41: 445–450.
-
(1991)
International Journal of Systematic Bacteriology
, vol.41
, pp. 445-450
-
-
Willems, A.1
De Ley, J.2
Gillis, M.3
Kersters, K.4
-
36
-
-
84923080032
-
Gut microbiome of the Hadza hunter-gatherers
-
Schnorr SL, Candela M, Rampelli S, Centanni M, Consolandi C, et al. (2014) Gut microbiome of the Hadza hunter-gatherers. Nat Commun 5: 3654.
-
(2014)
Nat Commun
, vol.5
, pp. 3654
-
-
Schnorr, S.L.1
Candela, M.2
Rampelli, S.3
Centanni, M.4
Consolandi, C.5
-
37
-
-
82355190051
-
High diversity and differential persistence of fecal Bacteroidales population spiked into freshwater microcosm
-
Liang Z, He Z, Zhou X, Powell CA, Yang Y, et al. (2012) High diversity and differential persistence of fecal Bacteroidales population spiked into freshwater microcosm. Water Res 46: 247–257.
-
(2012)
Water Res
, vol.46
, pp. 247-257
-
-
Liang, Z.1
He, Z.2
Zhou, X.3
Powell, C.A.4
Yang, Y.5
-
38
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, et al. (2012) Human gut microbiome viewed across age and geography. Nature 486: 222–227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
-
39
-
-
14844358370
-
Dispersal in a parasitic worm and its two hosts: consequence for local adaptation
-
Prugnolle F, Theron A, Pointier JP, Jabbour-Zahab R, Jarne P, et al. (2005) Dispersal in a parasitic worm and its two hosts: consequence for local adaptation. Evolution 59: 296–303.
-
(2005)
Evolution
, vol.59
, pp. 296-303
-
-
Prugnolle, F.1
Theron, A.2
Pointier, J.P.3
Jabbour-Zahab, R.4
Jarne, P.5
-
40
-
-
1942533002
-
Spatial patterns of urinary schistosomiasis infection in a highly endemic area of coastal Kenya
-
Clennon JA, King CH, Muchiri EM, Kariuki HC, Ouma JH, et al. (2004) Spatial patterns of urinary schistosomiasis infection in a highly endemic area of coastal Kenya. Am J Trop Med Hyg 70: 443–448.
-
(2004)
Am J Trop Med Hyg
, vol.70
, pp. 443-448
-
-
Clennon, J.A.1
King, C.H.2
Muchiri, E.M.3
Kariuki, H.C.4
Ouma, J.H.5
-
41
-
-
0030618005
-
Spatial patterns of human water contact and Schistosoma mansoni transmission and infection in four rural areas in Machakos District, Kenya
-
Kloos H, Fulford AJ, Butterworth AE, Sturrock RF, Ouma JH, et al. (1997) Spatial patterns of human water contact and Schistosoma mansoni transmission and infection in four rural areas in Machakos District, Kenya. Soc Sci Med 44: 949–968.
-
(1997)
Soc Sci Med
, vol.44
, pp. 949-968
-
-
Kloos, H.1
Fulford, A.J.2
Butterworth, A.E.3
Sturrock, R.F.4
Ouma, J.H.5
-
42
-
-
42149168057
-
Improved real-time PCR assays for the detection of fecal indicator bacteria in surface waters with different instrument and reagent systems
-
Siefring S, Varma M, Atikovic E, Wymer L, Haugland RA, (2008) Improved real-time PCR assays for the detection of fecal indicator bacteria in surface waters with different instrument and reagent systems. J Water Health 6: 225–237.
-
(2008)
J Water Health
, vol.6
, pp. 225-237
-
-
Siefring, S.1
Varma, M.2
Atikovic, E.3
Wymer, L.4
Haugland, R.A.5
-
43
-
-
4644301880
-
Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
-
Dick LK, Field KG, (2004) Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl Environ Microbiol 70: 5695–5697.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5695-5697
-
-
Dick, L.K.1
Field, K.G.2
-
44
-
-
34547597968
-
16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
-
Kildare BJ, Leutenegger CM, McSwain BS, Bambic DG, Rajal VB, et al. (2007) 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Res 41: 3701–3715.
-
(2007)
Water Res
, vol.41
, pp. 3701-3715
-
-
Kildare, B.J.1
Leutenegger, C.M.2
McSwain, B.S.3
Bambic, D.G.4
Rajal, V.B.5
-
45
-
-
79959798623
-
Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment
-
Sauer EP, Vandewalle JL, Bootsma MJ, McLellan SL, (2010) Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment. Water Res 45: 4081–4091.
-
(2010)
Water Res
, vol.45
, pp. 4081-4091
-
-
Sauer, E.P.1
Vandewalle, J.L.2
Bootsma, M.J.3
McLellan, S.L.4
-
46
-
-
82955227659
-
Lachnospiraceae and Bacteroidales alternative fecal indicators reveal chronic human sewage contamination in an urban harbor
-
Newton RJ, Vandewalle JL, Borchardt MA, Gorelick MH, McLellan SL, (2011) Lachnospiraceae and Bacteroidales alternative fecal indicators reveal chronic human sewage contamination in an urban harbor. Appl Environ Microbiol 77: 6972–6981.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 6972-6981
-
-
Newton, R.J.1
Vandewalle, J.L.2
Borchardt, M.A.3
Gorelick, M.H.4
McLellan, S.L.5
-
47
-
-
33747783198
-
Accumulation and fate of green fluorescent labeled Escherichia coli in laboratory-scale drinking water biofilters
-
Li J, McLellan S, Ogawa S, (2006) Accumulation and fate of green fluorescent labeled Escherichia coli in laboratory-scale drinking water biofilters. Water Res 40: 3023–3028.
-
(2006)
Water Res
, vol.40
, pp. 3023-3028
-
-
Li, J.1
McLellan, S.2
Ogawa, S.3
-
48
-
-
33747329331
-
Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions
-
Reischer GH, Kasper DC, Steinborn R, Mach RL, Farnleitner AH, (2006) Quantitative PCR method for sensitive detection of ruminant fecal pollution in freshwater and evaluation of this method in alpine karstic regions. Appl Environ Microbiol 72: 5610–5614.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5610-5614
-
-
Reischer, G.H.1
Kasper, D.C.2
Steinborn, R.3
Mach, R.L.4
Farnleitner, A.H.5
|