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Volumn 46, Issue 1, 2012, Pages 247-257

High diversity and differential persistence of fecal Bacteroidales population spiked into freshwater microcosm

Author keywords

Bacteroidales population; Denaturing gradient gel electrophoresis; Diversity; Fecal pollution; Freshwater; Persistence

Indexed keywords

ELECTROPHORESIS; ESCHERICHIA COLI; MAMMALS; RNA; WATER; WATER POLLUTION;

EID: 82355190051     PISSN: 00431354     EISSN: 18792448     Source Type: Journal    
DOI: 10.1016/j.watres.2011.11.004     Document Type: Article
Times cited : (36)

References (42)
  • 1
    • 70350773421 scopus 로고    scopus 로고
    • Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide
    • Bae S., Wuertz S. Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide. Water Research 2009, 43(19):4850-4859.
    • (2009) Water Research , vol.43 , Issue.19 , pp. 4850-4859
    • Bae, S.1    Wuertz, S.2
  • 2
    • 78649686533 scopus 로고    scopus 로고
    • Persistence of Bacteroides species populations in a river as measured by molecular and culture techniques
    • Balleste E., Blanch A.R. Persistence of Bacteroides species populations in a river as measured by molecular and culture techniques. Applied Environment Microbiology 2010, 76(22):7608-7616.
    • (2010) Applied Environment Microbiology , vol.76 , Issue.22 , pp. 7608-7616
    • Balleste, E.1    Blanch, A.R.2
  • 3
    • 0842264185 scopus 로고    scopus 로고
    • The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen
    • Baughn A.D., Malamy M.H. The strict anaerobe Bacteroides fragilis grows in and benefits from nanomolar concentrations of oxygen. Nature 2004, 427(6973):441-444.
    • (2004) Nature , vol.427 , Issue.6973 , pp. 441-444
    • Baughn, A.D.1    Malamy, M.H.2
  • 5
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • Bernhard A.E., Field K.G. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Applied Environment Microbiology 2000, 66(10):4571-4574.
    • (2000) Applied Environment Microbiology , vol.66 , Issue.10 , pp. 4571-4574
    • Bernhard, A.E.1    Field, K.G.2
  • 6
    • 0022649953 scopus 로고
    • Modeling enteric bacterial die-off - a review
    • Crane S.R., Moore J.A. Modeling enteric bacterial die-off - a review. Water, Air, & Soil Pollution 1986, 27(3-4):411-439.
    • (1986) Water, Air, & Soil Pollution , vol.27 , Issue.3-4 , pp. 411-439
    • Crane, S.R.1    Moore, J.A.2
  • 8
    • 77952247779 scopus 로고    scopus 로고
    • Relative decay of Bacteroidales microbial source tracking markers and cultivated Escherichia coli in freshwater microcosms
    • Dick L.K., Stelzer E.A., Bertke E.E., Fong D.L., Stoeckel D.M. Relative decay of Bacteroidales microbial source tracking markers and cultivated Escherichia coli in freshwater microcosms. Applied Environment Microbiology 2010, 76(10):3255-3262.
    • (2010) Applied Environment Microbiology , vol.76 , Issue.10 , pp. 3255-3262
    • Dick, L.K.1    Stelzer, E.A.2    Bertke, E.E.3    Fong, D.L.4    Stoeckel, D.M.5
  • 10
    • 33644952712 scopus 로고    scopus 로고
    • Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting
    • Eichler S., Christen R., Holtje C., Westphal P., Botel J., Brettar I., Mehling A., Hofle M.G. Composition and dynamics of bacterial communities of a drinking water supply system as assessed by RNA- and DNA-based 16S rRNA gene fingerprinting. Applied Environment Microbiology 2006, 72(3):1858-1872.
    • (2006) Applied Environment Microbiology , vol.72 , Issue.3 , pp. 1858-1872
    • Eichler, S.1    Christen, R.2    Holtje, C.3    Westphal, P.4    Botel, J.5    Brettar, I.6    Mehling, A.7    Hofle, M.G.8
  • 11
    • 71549165471 scopus 로고    scopus 로고
    • Evaluation of host-specific Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed
    • Fremaux B., Gritzfeld J., Boa T., Yost C.K. Evaluation of host-specific Bacteroidales 16S rRNA gene markers as a complementary tool for detecting fecal pollution in a prairie watershed. Water Research 2009, 43(19):4838-4849.
    • (2009) Water Research , vol.43 , Issue.19 , pp. 4838-4849
    • Fremaux, B.1    Gritzfeld, J.2    Boa, T.3    Yost, C.K.4
  • 12
    • 38949084160 scopus 로고    scopus 로고
    • Sediment-water exchange of Vibrio sp and fecal indicator bacteria: implications for persistence and transport in the Neuse River Estuary, North Carolina, USA
    • Fries J.S., Characklis G.W., Noble R.T. Sediment-water exchange of Vibrio sp and fecal indicator bacteria: implications for persistence and transport in the Neuse River Estuary, North Carolina, USA. Water Research 2008, 42(4-5):941-950.
    • (2008) Water Research , vol.42 , Issue.4-5 , pp. 941-950
    • Fries, J.S.1    Characklis, G.W.2    Noble, R.T.3
  • 14
    • 0028995187 scopus 로고
    • Modelling enteric bacteria survival in aquatic systems
    • Gonzalez J.M. Modelling enteric bacteria survival in aquatic systems. Hydrobiologia 1995, 316(2):109-116.
    • (1995) Hydrobiologia , vol.316 , Issue.2 , pp. 109-116
    • Gonzalez, J.M.1
  • 15
    • 34547754433 scopus 로고    scopus 로고
    • Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in French estuaries
    • Gourmelon M., Caprais M.P., Segura R., Le Mennec C., Lozach S., Piriou J.Y., Rince A. Evaluation of two library-independent microbial source tracking methods to identify sources of fecal contamination in French estuaries. Applied Environment Microbiology 2007, 73(15):4857-4866.
    • (2007) Applied Environment Microbiology , vol.73 , Issue.15 , pp. 4857-4866
    • Gourmelon, M.1    Caprais, M.P.2    Segura, R.3    Le Mennec, C.4    Lozach, S.5    Piriou, J.Y.6    Rince, A.7
  • 16
    • 0029294394 scopus 로고
    • Fecal bacteria in agricultural waters of the bluegrass region of Kentucky
    • Howell J.M., Coyne M.S., Cornelius P. Fecal bacteria in agricultural waters of the bluegrass region of Kentucky. Journal of Environmental Quality 1995, 24(3):411-419.
    • (1995) Journal of Environmental Quality , vol.24 , Issue.3 , pp. 411-419
    • Howell, J.M.1    Coyne, M.S.2    Cornelius, P.3
  • 18
    • 34547597968 scopus 로고    scopus 로고
    • 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach
    • Kildare B.J., Leutenegger C.M., McSwain B.S., Bambic D.G., Rajal V.B., Wuertz S. 16S rRNA-based assays for quantitative detection of universal, human-, cow-, and dog-specific fecal Bacteroidales: a Bayesian approach. Water Research 2007, 41(16):3701-3715.
    • (2007) Water Research , vol.41 , Issue.16 , pp. 3701-3715
    • Kildare, B.J.1    Leutenegger, C.M.2    McSwain, B.S.3    Bambic, D.G.4    Rajal, V.B.5    Wuertz, S.6
  • 19
    • 0028906052 scopus 로고
    • Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution
    • Kreader C.A. Design and evaluation of Bacteroides DNA probes for the specific detection of human fecal pollution. Applied Environment Microbiology 1995, 61(4):1171-1179.
    • (1995) Applied Environment Microbiology , vol.61 , Issue.4 , pp. 1171-1179
    • Kreader, C.A.1
  • 20
    • 0031714984 scopus 로고    scopus 로고
    • Persistence of PCR-detectable Bacteroides distasonis from human feces in river water
    • Kreader C.A. Persistence of PCR-detectable Bacteroides distasonis from human feces in river water. Applied Environment Microbiology 1998, 64(10):4103-4105.
    • (1998) Applied Environment Microbiology , vol.64 , Issue.10 , pp. 4103-4105
    • Kreader, C.A.1
  • 21
    • 33847730305 scopus 로고    scopus 로고
    • Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene
    • Lamendella R., Santo Domingo J.W., Oerther D.B., Vogel J.R., Stoeckel D.M. Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene. FEMS Microbiology Ecology 2007, 59(3):651-660.
    • (2007) FEMS Microbiology Ecology , vol.59 , Issue.3 , pp. 651-660
    • Lamendella, R.1    Santo Domingo, J.W.2    Oerther, D.B.3    Vogel, J.R.4    Stoeckel, D.M.5
  • 22
    • 33745153077 scopus 로고    scopus 로고
    • Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water
    • Layton A., McKay L., Williams D., Garrett V., Gentry R., Sayler G. Development of Bacteroides 16S rRNA gene TaqMan-based real-time PCR assays for estimation of total, human, and bovine fecal pollution in water. Applied Environment Microbiology 2006, 72(6):4214-4224.
    • (2006) Applied Environment Microbiology , vol.72 , Issue.6 , pp. 4214-4224
    • Layton, A.1    McKay, L.2    Williams, D.3    Garrett, V.4    Gentry, R.5    Sayler, G.6
  • 23
    • 34547912857 scopus 로고    scopus 로고
    • Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis)
    • Li K., Guan W., Wei G., Liu B., Xu J., Zhao L., Zhang Y. Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis). Journal of Applied Microbiology 2007, 103(3):675-682.
    • (2007) Journal of Applied Microbiology , vol.103 , Issue.3 , pp. 675-682
    • Li, K.1    Guan, W.2    Wei, G.3    Liu, B.4    Xu, J.5    Zhao, L.6    Zhang, Y.7
  • 24
    • 62649122287 scopus 로고    scopus 로고
    • Molecular diversity of Bacteroides spp. in human fecal microbiota as determined by group-specific 16S rRNA gene clone library analysis
    • Li M., Zhou H., Hua W., Wang B., Wang S., Zhao G., Li L., Zhao L., Pang X. Molecular diversity of Bacteroides spp. in human fecal microbiota as determined by group-specific 16S rRNA gene clone library analysis. Systematic and Applied Microbiology 2009, 32(3):193-200.
    • (2009) Systematic and Applied Microbiology , vol.32 , Issue.3 , pp. 193-200
    • Li, M.1    Zhou, H.2    Hua, W.3    Wang, B.4    Wang, S.5    Zhao, G.6    Li, L.7    Zhao, L.8    Pang, X.9
  • 26
    • 0037650127 scopus 로고    scopus 로고
    • Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers
    • Liu C.X., Song Y.L., McTeague M., Vu A.W., Wexler H., Finegold S.M. Rapid identification of the species of the Bacteroides fragilis group by multiplex PCR assays using group- and species-specific primers. FEMS Microbiology Letters 2003, 222(1):9-16.
    • (2003) FEMS Microbiology Letters , vol.222 , Issue.1 , pp. 9-16
    • Liu, C.X.1    Song, Y.L.2    McTeague, M.3    Vu, A.W.4    Wexler, H.5    Finegold, S.M.6
  • 27
    • 0028136885 scopus 로고
    • Bacterial gene-transfer by natural genetic-transformation in the environment
    • Lorenz M.G., Wackernagel W. Bacterial gene-transfer by natural genetic-transformation in the environment. Microbiology Reviews 1994, 58(3):563-602.
    • (1994) Microbiology Reviews , vol.58 , Issue.3 , pp. 563-602
    • Lorenz, M.G.1    Wackernagel, W.2
  • 28
    • 34548299909 scopus 로고    scopus 로고
    • Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity
    • Okabe S., Shimazu Y. Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity. Applied Microbiology and Biotechnology 2007, 76(4):935-944.
    • (2007) Applied Microbiology and Biotechnology , vol.76 , Issue.4 , pp. 935-944
    • Okabe, S.1    Shimazu, Y.2
  • 29
    • 17644371700 scopus 로고    scopus 로고
    • Molecular profiling of Bacteroides spp. in human feces by PCR-temperature gradient gel electrophoresis
    • Pang X.Y., Ding D.Z., Wei G.F., Zhang M.L., Wang L.H., Zhao L.P. Molecular profiling of Bacteroides spp. in human feces by PCR-temperature gradient gel electrophoresis. Journal of Microbiological Methods 2005, 61(3):413-417.
    • (2005) Journal of Microbiological Methods , vol.61 , Issue.3 , pp. 413-417
    • Pang, X.Y.1    Ding, D.Z.2    Wei, G.F.3    Zhang, M.L.4    Wang, L.H.5    Zhao, L.P.6
  • 30
    • 0141788349 scopus 로고    scopus 로고
    • The complex oxidative stress response of Bacteroides fragilis: the role of OxyR in control of gene expression
    • Rocha E.R., Herren C.D., Smalley D.J., Smith C.J. The complex oxidative stress response of Bacteroides fragilis: the role of OxyR in control of gene expression. Anaerobe 2003, 9(4):165-173.
    • (2003) Anaerobe , vol.9 , Issue.4 , pp. 165-173
    • Rocha, E.R.1    Herren, C.D.2    Smalley, D.J.3    Smith, C.J.4
  • 31
    • 0014950140 scopus 로고
    • Effect of secondary structure on degradation of ribosomal RNA
    • Rodgers A. Effect of secondary structure on degradation of ribosomal RNA. Biochimica et Biophysica Acta 1970, 217(2):540.
    • (1970) Biochimica et Biophysica Acta , vol.217 , Issue.2 , pp. 540
    • Rodgers, A.1
  • 32
    • 27744568115 scopus 로고    scopus 로고
    • Application of a direct fluorescence-based live/dead staining combined with fluorescence in situ hybridization for assessment of survival rate of Bacteroides spp. in drinking water
    • Savichtcheva O., Okayama N., Ito T., Okabe S. Application of a direct fluorescence-based live/dead staining combined with fluorescence in situ hybridization for assessment of survival rate of Bacteroides spp. in drinking water. Biotechnology and Bioengineering 2005, 92(3):356-363.
    • (2005) Biotechnology and Bioengineering , vol.92 , Issue.3 , pp. 356-363
    • Savichtcheva, O.1    Okayama, N.2    Ito, T.3    Okabe, S.4
  • 33
    • 0001140586 scopus 로고
    • Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium
    • Schaechter M., Maaloe O., Kjeldgaard N.O. Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium. Journal of General Microbiology 1958, 19(3):592-606.
    • (1958) Journal of General Microbiology , vol.19 , Issue.3 , pp. 592-606
    • Schaechter, M.1    Maaloe, O.2    Kjeldgaard, N.O.3
  • 34
    • 79955579268 scopus 로고    scopus 로고
    • Fecal Bacteroidales diversity and decay in response to variations in temperature and salinity
    • Schulz C.J., Childers G.W. Fecal Bacteroidales diversity and decay in response to variations in temperature and salinity. Applied Environment Microbiology 2011, 77(8):2563-2572.
    • (2011) Applied Environment Microbiology , vol.77 , Issue.8 , pp. 2563-2572
    • Schulz, C.J.1    Childers, G.W.2
  • 35
    • 12744260019 scopus 로고    scopus 로고
    • Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater
    • Seurinck S., Defoirdt T., Verstraete W., Siciliano S.D. Detection and quantification of the human-specific HF183 Bacteroides 16S rRNA genetic marker with real-time PCR for assessment of human faecal pollution in freshwater. Environmental Microbiology 2005, 7(2):249-259.
    • (2005) Environmental Microbiology , vol.7 , Issue.2 , pp. 249-259
    • Seurinck, S.1    Defoirdt, T.2    Verstraete, W.3    Siciliano, S.D.4
  • 36
    • 71549131006 scopus 로고    scopus 로고
    • Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces
    • Silkie S.S., Nelson K.L. Concentrations of host-specific and generic fecal markers measured by quantitative PCR in raw sewage and fresh animal feces. Water Research 2009, 43(19):4860-4871.
    • (2009) Water Research , vol.43 , Issue.19 , pp. 4860-4871
    • Silkie, S.S.1    Nelson, K.L.2
  • 37
    • 33746080907 scopus 로고    scopus 로고
    • Persistence and growth of fecal Bacteroidales assessed by bromodeoxyuridine immunocapture
    • Walters S.P., Field K.G. Persistence and growth of fecal Bacteroidales assessed by bromodeoxyuridine immunocapture. Applied Environment Microbiology 2006, 72(7):4532-4539.
    • (2006) Applied Environment Microbiology , vol.72 , Issue.7 , pp. 4532-4539
    • Walters, S.P.1    Field, K.G.2
  • 38
    • 66649133470 scopus 로고    scopus 로고
    • Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms
    • Walters S.P., Field K.G. Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms. Environmental Microbiology 2009, 11(6):1410-1421.
    • (2009) Environmental Microbiology , vol.11 , Issue.6 , pp. 1410-1421
    • Walters, S.P.1    Field, K.G.2
  • 39
    • 33947410785 scopus 로고    scopus 로고
    • Detection of Bacteroidales fecal indicators and the zoonotic pathogens E-Coli O157: H7, Salmonella, and Campylobacter in river water
    • Walters S.P., Gannon V.P.J., Field K.G. Detection of Bacteroidales fecal indicators and the zoonotic pathogens E-Coli O157: H7, Salmonella, and Campylobacter in river water. Environmental Science & Technology 2007, 41(6):1856-1862.
    • (2007) Environmental Science & Technology , vol.41 , Issue.6 , pp. 1856-1862
    • Walters, S.P.1    Gannon, V.P.J.2    Field, K.G.3
  • 40
    • 70350763183 scopus 로고    scopus 로고
    • Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters
    • Walters S.P., Yamahara K.M., Boehm A.B. Persistence of nucleic acid markers of health-relevant organisms in seawater microcosms: implications for their use in assessing risk in recreational waters. Water Research 2009, 43(19):4929-4939.
    • (2009) Water Research , vol.43 , Issue.19 , pp. 4929-4939
    • Walters, S.P.1    Yamahara, K.M.2    Boehm, A.B.3
  • 42
    • 79954425137 scopus 로고    scopus 로고
    • The development and stability of the genus Bacteriodes from human gut microbiota in HFA Mice model
    • Yuan J., Zeng B., Niu R., Tang H., Li W., Zhang Z., Wei H. The development and stability of the genus Bacteriodes from human gut microbiota in HFA Mice model. Current Microbiology 2011, 62(4):1107-1112.
    • (2011) Current Microbiology , vol.62 , Issue.4 , pp. 1107-1112
    • Yuan, J.1    Zeng, B.2    Niu, R.3    Tang, H.4    Li, W.5    Zhang, Z.6    Wei, H.7


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