-
1
-
-
84884179284
-
Mapping the cysteine proteome: Analysis of redox-sensing thiols
-
Go, Y. M., and Jones, D. P. (2013) Mapping the cysteine proteome: analysis of redox-sensing thiols. J. Biol. Chem. 288, 26512-26520
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 26512-26520
-
-
Go, Y.M.1
Jones, D.P.2
-
2
-
-
0042164949
-
Redox proteomics: Identification of oxidatively modified proteins
-
Ghezzi, P., and Bonetto, V. (2003) Redox proteomics: identification of oxidatively modified proteins. Proteomics 3, 1145-1153
-
(2003)
Proteomics
, vol.3
, pp. 1145-1153
-
-
Ghezzi, P.1
Bonetto, V.2
-
3
-
-
20544459926
-
Proteomic detection of hydrogen peroxide-sensitive thiol proteins in jurkat cells
-
Barty, J. W., Hampton, M. B., and Winterbourn, C. C. (2005) Proteomic detection of hydrogen peroxide-sensitive thiol proteins in Jurkat cells. Biochem. J. 389, 785-795
-
(2005)
Biochem. J.
, vol.389
, pp. 785-795
-
-
Barty, J.W.1
Hampton, M.B.2
Winterbourn, C.C.3
-
4
-
-
34447130271
-
Thioredoxin-linked proteins are reduced during germination of medicago truncatula seeds
-
Alkhalfioui, F., Renard, M., Vensel, W. H., Wong, J., Tanaka, C. K., Hurkman, W. J., Buchanan, B. B., and Montrichard, F. (2007) Thioredoxin-linked proteins are reduced during germination of Medicago truncatula seeds. Plant Physiol. 144, 1559-1579
-
(2007)
Plant Physiol.
, vol.144
, pp. 1559-1579
-
-
Alkhalfioui, F.1
Renard, M.2
Vensel, W.H.3
Wong, J.4
Tanaka, C.K.5
Hurkman, W.J.6
Buchanan, B.B.7
Montrichard, F.8
-
5
-
-
57549086038
-
Proteomic analysis of in vivo redox regulated proteins in arabidopsis
-
Alvarez, S., Wilson, G. H., and Chen, S. (2009) Proteomic analysis of in vivo redox regulated proteins in Arabidopsis. J. Chromatogr. B 877, 101-104
-
(2009)
J. Chromatogr. B
, vol.877
, pp. 101-104
-
-
Alvarez, S.1
Wilson, G.H.2
Chen, S.3
-
6
-
-
55249116799
-
Quantitative analysis of redox-sensitive proteome with DIGE and ICAT
-
Fu, C., Hu, J., Liu, T., Ago, T., Sadoshima, J., and Li, H. (2008) Quantitative analysis of redox-sensitive proteome with DIGE and ICAT. J. Proteome Res. 7, 3789-3802
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3789-3802
-
-
Fu, C.1
Hu, J.2
Liu, T.3
Ago, T.4
Sadoshima, J.5
Li, H.6
-
7
-
-
84899660067
-
Thiol-based redox proteins in abscisic acid and methyl jasmonate signaling in brassica napus guard cells
-
Zhu, M., Zhu, N., Song, W., Harmon, A., Assmann, S. M., and Chen, S. (2014) Thiol-based redox proteins in abscisic acid and methyl jasmonate signaling in Brassica napus guard cells. Plant J. 78, 491-515
-
(2014)
Plant J.
, vol.78
, pp. 491-515
-
-
Zhu, M.1
Zhu, N.2
Song, W.3
Harmon, A.4
Assmann, S.M.5
Chen, S.6
-
8
-
-
84899867980
-
Integrated redox proteomics and metabolomics of mitochondria to identify mechanisms of cd toxicity
-
Go, Y. M., Roede, J. R., Orr, M., Liang, Y., and Jones, D. P. (2014) Integrated redox proteomics and metabolomics of mitochondria to identify mechanisms of Cd toxicity. Toxicol. Sci. 139, 59-73
-
(2014)
Toxicol. Sci.
, vol.139
, pp. 59-73
-
-
Go, Y.M.1
Roede, J.R.2
Orr, M.3
Liang, Y.4
Jones, D.P.5
-
9
-
-
84863758944
-
Profiling thiol redox proteome using isotope tagging mass spectrometry
-
Parker, J., Zhu, N., Zhu, M., and Chen, S. (2012) Profiling thiol redox proteome using isotope tagging mass spectrometry. J. Vis. Exp. 61, 3766-3791
-
(2012)
J. Vis. Exp.
, vol.61
, pp. 3766-3791
-
-
Parker, J.1
Zhu, N.2
Zhu, M.3
Chen, S.4
-
10
-
-
84887934400
-
Application of iTRAQ reagents to relatively quantify the reversible redox state of cysteine residues
-
McDonagh, B., Martínez-Acedo, P., Várquez, J., Padilla, A., Sheehan, D., and Bárcena, J. A. (2012) Application of iTRAQ reagents to relatively quantify the reversible redox state of cysteine residues. Int. J. Proteomics 2012, 1-9
-
(2012)
Int. J. Proteomics 2012
, pp. 1-9
-
-
McDonagh, B.1
Martínez-Acedo, P.2
Várquez, J.3
Padilla, A.4
Sheehan, D.5
Bárcena, J.A.6
-
11
-
-
84355166576
-
CysTRAQ - A combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes
-
Tambor, V., Hunter, C. L., Seymour, S. L., Kacerovsky, M., Stulik, J., and Lenco, J. (2012) cysTRAQ - a combination of iTRAQ and enrichment of cysteinyl peptides for uncovering and quantifying hidden proteomes. J. Proteomics 75, 857-867
-
(2012)
J. Proteomics
, vol.75
, pp. 857-867
-
-
Tambor, V.1
Hunter, C.L.2
Seymour, S.L.3
Kacerovsky, M.4
Stulik, J.5
Lenco, J.6
-
12
-
-
84887900161
-
Redox proteomics: From residue modifications to putative biomarker identification by gel- and LC-MS-based approaches
-
Mermelekas, G., Makridakis, M., Koeck, T., and Vlahou, A. (2013) Redox proteomics: from residue modifications to putative biomarker identification by gel- and LC-MS-based approaches. Expert Rev. Proteomics 10, 537-549
-
(2013)
Expert Rev. Proteomics
, vol.10
, pp. 537-549
-
-
Mermelekas, G.1
Makridakis, M.2
Koeck, T.3
Vlahou, A.4
-
13
-
-
84895766026
-
Identification of redox-sensitive cysteines in the arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method
-
Liu, P., Zhang, H., Wang, H., and Xia, Y. (2014) Identification of redox-sensitive cysteines in the Arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method. Proteomics 14, 750-762
-
(2014)
Proteomics
, vol.14
, pp. 750-762
-
-
Liu, P.1
Zhang, H.2
Wang, H.3
Xia, Y.4
-
14
-
-
84894103105
-
Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling
-
Su, D., Gaffrey, M. J., Guo, J., Hatchell, K. E., Chu, R. K., Clauss, T. R. W., Aldrich, J. T., Wu, S., Purvine, S., Camp, D. G., Smith, R. D., Thrall, B. D., and Qian, W. (2014) Proteomic identification and quantification of S-glutathionylation in mouse macrophages using resin-assisted enrichment and isobaric labeling. Radic. Biol. Med. 67, 460-470
-
(2014)
Radic. Biol. Med.
, vol.67
, pp. 460-470
-
-
Su, D.1
Gaffrey, M.J.2
Guo, J.3
Hatchell, K.E.4
Chu, R.K.5
Clauss, T.R.W.6
Aldrich, J.T.7
Wu, S.8
Purvine, S.9
Camp, D.G.10
Smith, R.D.11
Thrall, B.D.12
Qian, W.13
-
15
-
-
33750588336
-
Advance in plant proteomics
-
Chen, S., and Harmon, A. (2006) Advance in plant proteomics. Proteomics 6, 5504-5516
-
(2006)
Proteomics
, vol.6
, pp. 5504-5516
-
-
Chen, S.1
Harmon, A.2
-
16
-
-
84865540710
-
Differential redox proteomics allows identification of proteins reversibly oxidized at cysteine residues in endothelial cells in response to acute hypoxia
-
Izquierdo-Alvarez, A., Ramos, E., Villanueva, J., Hernansanz-Augustín, P., Fernández-Rodriguez, R., Tello, D., Carrascal, M., and Martínez-Ruiz, A. (2012) Differential redox proteomics allows identification of proteins reversibly oxidized at cysteine residues in endothelial cells in response to acute hypoxia. J. Proteomics 75, 5449-5462
-
(2012)
J. Proteomics
, vol.75
, pp. 5449-5462
-
-
Izquierdo-Alvarez, A.1
Ramos, E.2
Villanueva, J.3
Hernansanz-Augustín, P.4
Fernández-Rodriguez, R.5
Tello, D.6
Carrascal, M.7
Martínez-Ruiz, A.8
-
17
-
-
84880156410
-
The hydrogen-sensitive proteome of the chloroplast in vitro and in vivo
-
Muthuramalingam, M., Matros, A., Scheibe, R., Mock, H. P., and Dietz, K. J. (2013) The hydrogen-sensitive proteome of the chloroplast in vitro and in vivo. Front. Plant Sci. 19, 4-54
-
(2013)
Front. Plant Sci.
, vol.19
, pp. 4-54
-
-
Muthuramalingam, M.1
Matros, A.2
Scheibe, R.3
Mock, H.P.4
Dietz, K.J.5
-
18
-
-
33646570847
-
Isobaric tags for relative and absolute quantification (iTRAQ) reproducibility: Implication of multiple injections
-
Chong, P. K., Gan, C. S., Pham, T. K., and Wright, P. C. (2006) Isobaric tags for relative and absolute quantification (iTRAQ) reproducibility: implication of multiple injections. J. Proteome Res. 5, 1232-1240
-
(2006)
J. Proteome Res.
, vol.5
, pp. 1232-1240
-
-
Chong, P.K.1
Gan, C.S.2
Pham, T.K.3
Wright, P.C.4
-
19
-
-
80053340729
-
A label-free quantitative shotgun proteomics analysis of rice grain development
-
Lee, J., and Koh, H. J. (2011) A label-free quantitative shotgun proteomics analysis of rice grain development. Proteome Sci. 9, 51-61
-
(2011)
Proteome Sci.
, vol.9
, pp. 51-61
-
-
Lee, J.1
Koh, H.J.2
-
20
-
-
0032560621
-
Ionization-reactivity relationships for cysteine thiols in polypeptides
-
Bulaj, G., Kortemme, T., and Goldenber, D. P. (1998) Ionization-reactivity relationships for cysteine thiols in polypeptides. Biochem. 37, 8965-8972
-
(1998)
Biochem.
, vol.37
, pp. 8965-8972
-
-
Bulaj, G.1
Kortemme, T.2
Goldenber, D.P.3
-
21
-
-
46149125288
-
Quantifying changes in the thiol redox proteome upon oxidative stress in vivo
-
Leichert, L. I., Gehrke, F., Gudiseva, H. V., Blachwell, T., Ilbert, M., Walker, A. K., Strahler, J. R., Andrews, P. C., and Jakob, U. (2008) Quantifying changes in the thiol redox proteome upon oxidative stress in vivo. Proc. Natl. Acad. Sci. U.S.A. 105, 8197-8202
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 8197-8202
-
-
Leichert, L.I.1
Gehrke, F.2
Gudiseva, H.V.3
Blachwell, T.4
Ilbert, M.5
Walker, A.K.6
Strahler, J.R.7
Andrews, P.C.8
Jakob, U.9
-
22
-
-
84863758944
-
Profiling thiol redox proteome using isotope tagging mass spectrometry
-
Parker, J., Zhu, N., Zhu, M., and Chen, S. (2012) Profiling thiol redox proteome using isotope tagging mass spectrometry. J. Vis. Exp. 61, 3766-3791
-
(2012)
J. Vis. Exp.
, vol.61
, pp. 3766-3791
-
-
Parker, J.1
Zhu, N.2
Zhu, M.3
Chen, S.4
-
23
-
-
40749141227
-
OutlierD: An R package for outlier detection using quantile regression on mass spectrometry data
-
Cho, H., Kim, Y., Jun, H. J., Lee, S., and Lee, J. W. (2008) OutlierD: an R package for outlier detection using quantile regression on mass spectrometry data. Bioinformatics 24, 882-884
-
(2008)
Bioinformatics
, vol.24
, pp. 882-884
-
-
Cho, H.1
Kim, Y.2
Jun, H.J.3
Lee, S.4
Lee, J.W.5
-
24
-
-
84875716859
-
Neutron-encoded mass signatures for multiplexed proteome quantification
-
Hebert, A. S., Merrill, A. E., Bailey, D. J., Still, A. J., Westphall, M. S., Strieter, E. R., Pagliarini, D. J., and Coon, J. J. (2013) Neutron-encoded mass signatures for multiplexed proteome quantification. Nat. Methods 10, 332-334
-
(2013)
Nat. Methods
, vol.10
, pp. 332-334
-
-
Hebert, A.S.1
Merrill, A.E.2
Bailey, D.J.3
Still, A.J.4
Westphall, M.S.5
Strieter, E.R.6
Pagliarini, D.J.7
Coon, J.J.8
-
25
-
-
75249085783
-
Methods for combining peptide intensities to estimate relative protein abundance
-
Carrillo, B., Yanofsky, C., Laboissiere, S., Nadon, R., and Kearney, R. E. (2010) Methods for combining peptide intensities to estimate relative protein abundance. Bioinformatics 26, 98-103
-
(2010)
Bioinformatics
, vol.26
, pp. 98-103
-
-
Carrillo, B.1
Yanofsky, C.2
Laboissiere, S.3
Nadon, R.4
Kearney, R.E.5
-
26
-
-
0036020892
-
A direct approach to false discovery rates
-
Storey, J. D. (2002) A direct approach to false discovery rates. J. R. Stat. Soc. B 64, 479-498
-
(2002)
J. R. Stat. Soc. B
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
27
-
-
14044257165
-
Protein thiol modifications visualized in vivo
-
Lichert, L. I., and Jakob, U. (2004) Protein thiol modifications visualized in vivo. PLoS Biol. 2, e333
-
(2004)
PLoS Biol.
, vol.2
, pp. e333
-
-
Lichert, L.I.1
Jakob, U.2
-
28
-
-
80155124832
-
MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics
-
Ting, L., Rad, R., Gygi, S. P., and Haas, W. (2011) MS3 eliminates ratio distortion in isobaric multiplexed quantitative proteomics. Nat. Methods 8, 937-940
-
(2011)
Nat. Methods
, vol.8
, pp. 937-940
-
-
Ting, L.1
Rad, R.2
Gygi, S.P.3
Haas, W.4
-
29
-
-
80155205237
-
Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging
-
Wenger, C. D., Lee, M. V., Hebert, A. S., McAlister, G. C., Phanstiel, D. H., Westphall, M. S., and Coon, J. J. (2011) Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging. Nat. Methods 8, 933-935
-
(2011)
Nat. Methods
, vol.8
, pp. 933-935
-
-
Wenger, C.D.1
Lee, M.V.2
Hebert, A.S.3
McAlister, G.C.4
Phanstiel, D.H.5
Westphall, M.S.6
Coon, J.J.7
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