Spatial and temporal activity of the foxtail millet (Setaria italica) seed-specific promoter pF128

Planta

Volumn 241, Issue 1, 2015, Pages 57-67

  Pan, Yanlin ^a   Ma, Xin ^a   Liang, Hanwen ^a   Zhao, Qian ^a   Zhu, Dengyun ^a   Yu, Jingjuan ^a  

^a CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Embryo; Endosperm transfer cell; Foxtail millet; Lipid transfer proteins; Promoter

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; POACEAE; SETARIA ITALICA; ZEA MAYS;

BETA GLUCURONIDASE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; PLANT GENOME; PLANT SEED; POLLINATION; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY; SETARIA (PLANT); TIME; TRANSGENIC PLANT;

AMINO ACID SEQUENCE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; GLUCURONIDASE; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; POLLINATION; PROMOTER REGIONS, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDS; SEQUENCE HOMOLOGY, AMINO ACID; SETARIA PLANT; TIME FACTORS;

EID: 84920158808     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-014-2164-5     Document Type: Article

References (70)

1. Alvarez ML, Guelman S, Halford NG, Lustig S, Reggiardo MI, Ryabushkina N, Schewry P, Stein J, Vallejos RH (2000) Silencing of HMW glutenins in transgenic wheat expressing extra HMW subunits. Theor Appl Genet 100:319–327
2. Arnold K, Bordoli L, Kopp J, Schwede T (2006) The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics 22: 195-201Belanger FC, Kriz AL (1989) Molecular characterization of the major maize embryo globulin encoded by the Glb1 gene. Plant Physiol 91:636–643
3. Belanger FC, Kriz AL (1989) Molecular characterization of the major maize embryo globulin encoded by the Glb1 gene. Plant Physiol 91:636–643
4. Bendtsen JD, Nielsen H, Heijne GV, Brunak S (2004) Improved prediction of signal peptides: signalP 3.0. J Mol Biol 340:783–795
5. Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Kerrie B, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye C, Herrera MM, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM (2012) Reference genome sequence of the model plant Setaria. Nat Biotechnol 30:555–561
6. Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254
7. Cai G, Faleri C, Casino CD, Hueros G, Thompson RD, Cresti M (2002) Subcellular localisation of BETL-1, -2 and -4 in Zea mays L. endosperm. Sex Plant Reprod 15:85–98
8. Chung K, Hwang S, Hahn B, Kim K, Kim J, Kim Y, Yang J, Ha S (2008) Authentic seed-specific activity of the Perilla oleosin 19 gene promoter in transgenic Arabidopsis. Plant Cell Rep 27:29–37
9. Clough SJ, Bent AF (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735–743
10. Doust AN, Kellogg EA, Devos KM, Bennetzen JL (2009) Foxtail millet: a sequence-driven grass model system. Plant Physiol 149:137–141
11. Ezcurra IS, ME M, Wycliffe P, Lberg KS, Rask L (1999) Interaction between composite elements in the napA promoter: both the B-box ABA-responsive complex and the RY/G complex are necessary for seed-specific expression. Plant Mol Biol 40:699–709
12. Ezcurra I, Wycliffe P, Nehlin L, Ellerstrom M, Rask L (2000) Transactivation of the Brassica napus napin promoter by ABI3 requires interaction of the conserved B2 and B3 domains of ABI3 with different cis-elements: B2 mediates activation through an ABRE, whereas B3 interacts with an RY/G-box. Plant J 24:57–66
13. Fujiwara T, Nambara E, Yamagishi K, Goto DB, Naito S (2002) Storage proteins. In: Somerville CR, Meyerowitz EM (eds) The Arabidopsis book. American Society of Plant Biologists, Rockville, pp 1–12
14. Giovinazzo G, Manzocchi LA, Bianchi MW, Coraggio I, Viotti A (1992) Functional analysis of the regulatory region of a zein gene in transiently transformed protoplasts. Plant Mol Biol 19:257–263
15. Gutierrez-Marcos JF, Costa LM, Biderre-Petit C, Khbaya B, O’Sullivan DM, Wormald M, Perez P, Dickinson HG (2004) Maternally expressed gene1 is a novel maize endosperm transfer cell specific gene with a maternal parent-of-origin pattern of expression. Plant Cell 16:1288–1301
16. Hood EE, Bailey MR, Beifuss K, Magallanes-Lundback M, Horn ME, Callaway E, Drees C, Delaney DE, Clough R, Howard JA (2003) Criteria for high-level expression of a fungal laccase gene in transgenic maize. Plant Biotechnol J 1:129–140
17. Horvath H, Huang J, Wong O, Kohl E, Okita T, Kannangara CG, von Wettstein D (2000) The production of recombinant proteins in transgenic barley grains. Proc Natl Acad Sci USA 97:1914–1919
18. Huang AH (1996) Oleosins and oil bodies in seeds and other organs. Plant Physiol 110:1055–1061
19. Hueros G, Varotto S, Salamini F, Thompson RD (1995) Molecular characterization of BET1, a gene expressed in the endosperm transfer cells of maize. Plant Cell 7:747–757
20. Hueros G, Rahfeld J, Salamini F, Thompson R (1998) A maize FK506-sensitive immunophilin, mzFKBP-66, is a peptidylproline cis-trans-isomerase that interacts with calmodulin and a 36-kDa cytoplasmic protein. Planta 205:121–131
21. Hwang YS, Yang D, McCullar C, Wu L, Chen L, Pham P, Nandi S, Huang N (2002) Analysis of the rice endosperm-specific globulin promoter in transformed rice cells. Plant Cell Rep 20:842–847
22. Ingle J, Beitz D, Hageman RH (1965) Changes in composition during development and maturation of maize seeds. Plant Physiol 40:835
23. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901–3907
24. Jia G, Huang X, Zhi H, Zhao Y, Zhao Q, Li W, Chai Y, Yang L, Liu K, Lu H, Zhu C, Lu Y, Zhou C, Fan D, Weng Q, Guo Y, Huang T, Zhang L, Lu T, Feng Q, Hao H, Liu H, Lu P, Zhang N, Li Y, Guo E, Wang S, Wang S, Liu J, Zhang W, Chen G, Zhang B, Li W, Wang Y, Li H, Zhao B, Li J, Diao X, Han B (2013) A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet 45:957–961
25. Kader J (1996) Lipid-transfer proteins in plants. Annu Rev Plant Physiol 47:627–654
26. Kader J (1997) Lipid-transfer proteins: a puzzling family of plant proteins. Trends Plant Sci 2:66–70
27. Kalla R, Shimamoto K, Potter R, Nielsen PS, Linnestad C, Olsen OA (1994) The promoter of the barley aleurone-specific gene encoding a putative 7 kDa lipid transfer protein confers aleurone cell-specific expression in transgenic rice. Plant J 6:849–860
28. Kim SY, Chung HJ, Thomas TL (1997) Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system. Plant J 11:1237–1251
29. Kovalchuk N, Smith J, Pallotta M, Singh R, Ismagul A, Eliby S, Bazanova N, Milligan AS, Hrmova M, Langridge P, Lopato S (2009) Characterization of the wheat endosperm transfer cell-specific protein TaPR60. Plant Mol Biol 71:81–98
30. Kovalchuk N, Li M, Wittek F, Reid N, Singh R, Shirley N, Ismagul A, Eliby S, Johnson A, Milligan AS, Hrmova M, Langridge P, Lopato S (2010) Defensin promoters as potential tools for engineering disease resistance in cereal grains. Plant Biotechnol J 8:47–64
31. Kovalchuk N, Smith J, Bazanova N, Pyvovarenko T, Singh R, Shirley N, Ismagul A, Johnson A, Milligan AS, Hrmova M, Langridge P, Lopato S (2012) Characterization of the wheat gene encoding a grain-specific lipid transfer protein TdPR61, and promoter activity in wheat, barley and rice. J Exp Bot 63:2025–2040
32. Kridl JC, McCarter DW, Rose RE, Scherer DE, Knutzon DS, Radke SE, Knauf VC (1991) Isolation and characterization of an expressed napin gene from Brassica rapa. Seed Sci Res 1:209–219
33. Kriz AL, Boston RS, Larkins BA (1987) Structural and transcriptional analysis of DNA sequences flanking genes that encode 19 kilodalton zeins. Mol Gen Genet 207:90–98
34. Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouz P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327
35. Li Y (1997) Millet breeding. China agriculture press, Beijin
36. Li M, Singh R, Bazanova N, Milligan AS, Shirley N, Langridge P, Lopato S (2008) Spatial and temporal expression of endosperm transfer cell-specific promoters in transgenic rice and barley. Plant Biotechnol J 6:465–476
37. Liu S, Kriz A (1996) Tissue-specific and ABA-regulated Maize Glb1 gene expression in transgenic tobacco. Plant Cell Rep 16:158–162
38. Liu Y, Whittier RF (1995) Thermal asymmetric interlaced PCR: automatable amplification and sequencing of insert end fragments from P1 and YAC clones for chromosome walking. Genomics 25:674–681
39. Liu Y, Yu J, Ao G, Zhao Q (2007) Factors influencing Agrobacterium-mediated transformation of foxtail millet (setraria italica). Chin J Biochem Mol 23:531–536
40. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods 25:402–408
41. Magnard J, Lehouque GL, Massonneau A, Frangne N, Heckel T, Gutierrez-Marcos JF, Perez P, Dumas C, Rogowsky PM (2003) ZmEBE genes show a novel, continuous expression pattern in the central cell before fertilization and in specific domains of the resulting endosperm after fertilization. Plant Mol Biol 53:821–836
42. Maitz M, Santandrea G, Zhang Z, Lal S, Hannah LC, Salamini F, Thompson RD (2000) Rgf1, a mutation reducing grain filling in maize through effects on basal endosperm and pedicel development. Plant J 23:29–42
43. Motto M, Hartings H, Fracassetti M, Consonni G (2012) Grain quality-related traits in maize: gene identification and exploitation. Maydica 56:291–314
44. Offler CE, McCurdy DW, Patrick JW, Talbot MJ (2003) Transfer cells: cells specialized for a special purpose. Annu Rev Plant Biol 54:431–454
45. Panaud O (2006) Foxtail millet. In: Chittaranjan K (ed) Cereals and millets. Springer-Verlag, Heidelberg, pp 325–332
46. Qin F, Zhao Q, Ao G, Yu J (2008) Co-suppression of Si401, a maize pollen specific Zm401 homologous gene, results in aberrant anther development in foxtail millet. Euphytica 163:103–111
47. Quattrocchio F, Tolk MA, Coraggio I, Mol JN, Viotti A, Koes RE (1990) The maize zein gene zE19 contains two distinct promoters which are independently activated in endosperm and anthers of transgenic Petunia plants. Plant Mol Biol 15:81–93
48. Radke SE, Andrews BM, Moloney MM, Crouch ML, Kridl JC, Knauf VC (1988) Transformation of Brassica napus L. using Agrobacterium tumefaciens: developmentally regulated expression of a reintroduced napin gene. Theor Appl Genet 75:685–694
49. Rascon-Cruz Q, Sinagawa-Garcia S, Osuna-Castro JA, Bohorova N, Paredes-Lopez O (2004) Accumulation, assembly, and digestibility of amarantin expressed in transgenic tropical maize. Theor Appl Genet 108:335–342
50. Rasmussen TB, Donaldson IA (2006) Investigation of the endosperm-specific sucrose synthase promoter from rice using transient expression of reporter genes in guar seed tissue. Plant Cell Rep 25:1035–1042
51. Sanchez R, Sali A (1998) Large-scale protein structure modeling of the Saccharomyces cerevisiae genome. Proc Natl Acad Sci USA 95:13597–13602
52. Serna A, Maitz M, O’Connell T, Santandrea G, Thevissen K, Tienens K, Hueros G, Faleri C, Cai G, Lottspeich F (2001) Maize endosperm secretes a novel antifungal protein into adjacent maternal tissue. Plant J 25:687–698
53. Smirnova OG, Kochetov AV (2012) Wheat promoter sequences for transgene expression. Russ J Genet: Applied Research 2:434–439
54. Soderman EM, Brocard IM, Lynch TJ, Finkelstein RR (2000) Regulation and function of the Arabidopsis ABA-insensitive4 gene in seed and abscisic acid response signaling networks. Plant Physiol 124:1752–1765
55. Stalberg K, Ellerstom M, Ezcurra I, Ablov S, Rask L (1996) Disruption of an overlapping E-box/ABRE motif abolished high transcription of the napA storage-protein promoter in transgenic Brassica napus seeds. Planta 199:515–519
56. Stoger E, Ma JKC, Fischer R, Christou P (2005) Sowing the seeds of success: pharmaceutical proteins from plants. Curr Opin Biotechnol 16:167–173
57. Thompson RD, Hueros G, Becker H, Maitz M (2001) Development and functions of seed transfer cells. Plant Sci 160:775–783
58. Vicente-Carbajosa J, Carbonero P (2005) Seed maturation: developing an intrusive phase to accomplish a quiescent state. Int J Dev Biol 49:645–651
59. Wang D, Zhao Q, Zhu D, Ao G, Yu J (2006) Particle-bombardment-mediated co-transformation of maize with a lysine rich protein gene (sb401) from potato. Euphytica 150:75–85
60. Wang M, Pan Y, Li C, Liu C, Zhao Q, Ao G, Yu J (2011) Culturing of immature inflorescences and Agrobacterium-mediated transformation of foxtail millet (Setaria italica). Afri J Biotechnol 10:16466–16479
61. Wang M, Liu C, Li S, Zhu D, Zhao Q, Yu J (2013) Improved Nutritive Quality and Salt Resistance in Transgenic Maize by Simultaneously Overexpression of a Natural Lysine-Rich Protein Gene, SBgLR, and an ERF Transcription Factor Gene, TSRF1. Int J Mol Sci 14(5):9459–9474
62. Washida H, Wu CY, Suzuki A, Yamanouchi U, Akihama T, Harada K, Takaiwa F (1999) Identification of cis-regulatory elements required for endosperm expression of the rice storage protein glutelin gene GluB-1. Plant Mol Biol 40:1–12
63. Weigel D, Glazebrook J (2002) Arabidopsis: a Laboratory Manual. Cold Spring Harbor Laboratory Press, New York
64. Wu C, Washida H, Onodera Y, Harada K, Takaiwa F (2000) Quantitative nature of the Prolamin-box, ACGT and AACA motifs in a rice glutelin gene promoter: minimal cis-element requirements for endosperm-specific gene expression. Plant J 23:415–421
65. Xue J, Yu J, Zhao Q, Zhu D, Ao G (2004) Cloning and Characterization of Seed-specific Expression f128 Gene in Setaria italica. J Agri Biotechnol. doi:10.3969/j.issn.1674-7968.2004.05.004
66. Yu J, Peng P, Zhang X, Zhao Q, Zhu D, Sun X, Liu J, Ao G (2004) Seed-specific expression of the lysine-rich protein sb401 gene significantly increases both lysine and total protein content in maize seeds. Mol Breeding 14:1–7
67. Zavallo D, Bilbao ML, Hopp HE, Heinz R (2010) Isolation and functional characterization of two novel seed-specific promoters from sunflower (Helianthus annuus L.). Plant Cell Rep 29:239–248
68. Zee SY, O’Brien TP (1971) Aleurone transfer cells and other structural features of the spikelet of millet. Aust J Biol Sci 24:391–395
69. Zhang G, Liu X, Quan Z, Cheng S, Xu X, Pan S, Xie M, Zeng P, Yue Z, Wang W, Tao Y, Bian C, Han C, Xia Q, Peng X, Cao R, Yang X, Zhan D, Hu J, Zhang Y, Li H, Li H, Li N, Wang J, Wang C, Wang R, Guo T, Cai Y, Liu C, Xiang H, Shi Q, Huang P, Chen Q, Li Y, Wang J, Zhao Z, Wang J (2012) Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol 30:549–554
70. Zheng Y, Wang Z (2010) Current opinions on endosperm transfer cells in maize. Plant Cell Rep 29:935–942