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Volumn 15, Issue 1, 2014, Pages

Highly sensitive amplicon-based transcript quantification by semiconductor sequencing

Author keywords

Digital transcript imaging; Multiplex analysis; Semiconductor RNA sequencing

Indexed keywords

COMPLEMENTARY DNA; JANUS KINASE; MESSENGER RNA; NITRIC OXIDE SYNTHASE; RAS PROTEIN; WNT PROTEIN; TRANSCRIPTOME;

EID: 84920103030     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-565     Document Type: Article
Times cited : (25)

References (33)
  • 2
    • 28544446736 scopus 로고    scopus 로고
    • Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection
    • Dunbar SA. Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection. Clin Chimica Acta Int J Clin Chem 2006, 363(1-2):71-82.
    • (2006) Clin Chimica Acta Int J Clin Chem , vol.363 , Issue.1-2 , pp. 71-82
    • Dunbar, S.A.1
  • 5
    • 0025861818 scopus 로고
    • Detection of specific polymerase chain reaction product by utilizing the 5'--3' exonuclease activity of Thermus aquaticus DNA polymerase
    • Holland PM, Abramson RD, Watson R, Gelfand DH. Detection of specific polymerase chain reaction product by utilizing the 5'--3' exonuclease activity of Thermus aquaticus DNA polymerase. Proc Natl Acad Sci U S A 1991, 88(16):7276-7280.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , Issue.16 , pp. 7276-7280
    • Holland, P.M.1    Abramson, R.D.2    Watson, R.3    Gelfand, D.H.4
  • 6
    • 84897121708 scopus 로고    scopus 로고
    • Evaluation of a New High-Throughput Next-Generation Sequencing Method Based on a Custom AmpliSeq Library and Ion Torrent PGM Sequencing for the Rapid Detection of Genetic Variations in Long QT Syndrome
    • [Epub ahead of print]
    • Millat G, Chanavat V, Rousson R. Evaluation of a New High-Throughput Next-Generation Sequencing Method Based on a Custom AmpliSeq Library and Ion Torrent PGM Sequencing for the Rapid Detection of Genetic Variations in Long QT Syndrome. Mol Diagn Therapy 2014, [Epub ahead of print].
    • (2014) Mol Diagn Therapy
    • Millat, G.1    Chanavat, V.2    Rousson, R.3
  • 7
    • 84887472968 scopus 로고    scopus 로고
    • Targeted next-generation sequencing panel (ThyroSeq) for detection of mutations in thyroid cancer
    • Nikiforova MN, Wald AI, Roy S, Durso MB, Nikiforov YE. Targeted next-generation sequencing panel (ThyroSeq) for detection of mutations in thyroid cancer. J Clin Endocrinol Metab 2013, 98(11):E1852-E1860.
    • (2013) J Clin Endocrinol Metab , vol.98 , Issue.11
    • Nikiforova, M.N.1    Wald, A.I.2    Roy, S.3    Durso, M.B.4    Nikiforov, Y.E.5
  • 12
    • 84886052163 scopus 로고    scopus 로고
    • Molecular diagnostic profiling of lung cancer specimens with a semiconductor-based massive parallel sequencing approach: feasibility, costs, and performance compared with conventional sequencing
    • Endris V, Penzel R, Warth A, Muckenhuber A, Schirmacher P, Stenzinger A, Weichert W. Molecular diagnostic profiling of lung cancer specimens with a semiconductor-based massive parallel sequencing approach: feasibility, costs, and performance compared with conventional sequencing. J Mol Diagn 2013, 15(6):765-775.
    • (2013) J Mol Diagn , vol.15 , Issue.6 , pp. 765-775
    • Endris, V.1    Penzel, R.2    Warth, A.3    Muckenhuber, A.4    Schirmacher, P.5    Stenzinger, A.6    Weichert, W.7
  • 13
    • 84870495569 scopus 로고    scopus 로고
    • Progress in ion torrent semiconductor chip based sequencing
    • Merriman B, Rothberg JM. Progress in ion torrent semiconductor chip based sequencing. Electrophoresis 2012, 33(23):3397-3417.
    • (2012) Electrophoresis , vol.33 , Issue.23 , pp. 3397-3417
    • Merriman, B.1    Rothberg, J.M.2
  • 16
    • 0034668118 scopus 로고    scopus 로고
    • Quantitative reverse transcription-polymerase chain reaction to study mRNA decay: comparison of endpoint and real-time methods
    • Schmittgen TD, Zakrajsek BA, Mills AG, Gorn V, Singer MJ, Reed MW. Quantitative reverse transcription-polymerase chain reaction to study mRNA decay: comparison of endpoint and real-time methods. Anal Biochem 2000, 285(2):194-204.
    • (2000) Anal Biochem , vol.285 , Issue.2 , pp. 194-204
    • Schmittgen, T.D.1    Zakrajsek, B.A.2    Mills, A.G.3    Gorn, V.4    Singer, M.J.5    Reed, M.W.6
  • 19
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008, 18(9):1509-1517.
    • (2008) Genome Res , vol.18 , Issue.9 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 22
    • 80053611688 scopus 로고    scopus 로고
    • FOXA1: master of steroid receptor function in cancer
    • Augello MA, Hickey TE, Knudsen KE. FOXA1: master of steroid receptor function in cancer. EMBO J 2011, 30(19):3885-3894.
    • (2011) EMBO J , vol.30 , Issue.19 , pp. 3885-3894
    • Augello, M.A.1    Hickey, T.E.2    Knudsen, K.E.3
  • 24
    • 84885188685 scopus 로고    scopus 로고
    • Formation, signaling functions, and metabolisms of nitrated cyclic nucleotide
    • Sawa T, Ihara H, Ida T, Fujii S, Nishida M, Akaike T. Formation, signaling functions, and metabolisms of nitrated cyclic nucleotide. Nitric Oxide 2013, 34:10-18.
    • (2013) Nitric Oxide , vol.34 , pp. 10-18
    • Sawa, T.1    Ihara, H.2    Ida, T.3    Fujii, S.4    Nishida, M.5    Akaike, T.6
  • 25
    • 19644367000 scopus 로고    scopus 로고
    • Activation and signaling of the p38 MAP kinase pathway
    • Zarubin T, Han J. Activation and signaling of the p38 MAP kinase pathway. Cell Res 2005, 15(1):11-18.
    • (2005) Cell Res , vol.15 , Issue.1 , pp. 11-18
    • Zarubin, T.1    Han, J.2
  • 27
    • 54249119561 scopus 로고    scopus 로고
    • JNK signaling in apoptosis
    • Dhanasekaran DN, Reddy EP. JNK signaling in apoptosis. Oncogene 2008, 27(48):6245-6251.
    • (2008) Oncogene , vol.27 , Issue.48 , pp. 6245-6251
    • Dhanasekaran, D.N.1    Reddy, E.P.2
  • 28
    • 34547107319 scopus 로고    scopus 로고
    • WNT signaling pathway and stem cell signaling network
    • Katoh M. WNT signaling pathway and stem cell signaling network. Clin Cancer Res 2007, 13(14):4042-4045.
    • (2007) Clin Cancer Res , vol.13 , Issue.14 , pp. 4042-4045
    • Katoh, M.1
  • 29
    • 84864119729 scopus 로고    scopus 로고
    • Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
    • Li H. Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly. Bioinform (Oxford Engl) 2012, 28(14):1838-1844.
    • (2012) Bioinform (Oxford Engl) , vol.28 , Issue.14 , pp. 1838-1844
    • Li, H.1
  • 30
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinform (Oxford Engl) 2009, 25(14):1754-1760.
    • (2009) Bioinform (Oxford Engl) , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 31
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinform (Oxford Engl) 2010, 26(5):589-595.
    • (2010) Bioinform (Oxford Engl) , vol.26 , Issue.5 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 32
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • Ning Z, Cox AJ, Mullikin JC. SSAHA: a fast search method for large DNA databases. Genome Res 2001, 11(10):1725-1729.
    • (2001) Genome Res , vol.11 , Issue.10 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 33
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinform (Oxford Engl) 2010, 26(1):139-140.
    • (2010) Bioinform (Oxford Engl) , vol.26 , Issue.1 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.