-
2
-
-
0003717374
-
-
W.H. Freeman: New York, various pagings
-
Berg, J. M.; Tymoczko, J. L.; Stryer, L. Biochemistry, 5th ed.; W.H. Freeman: New York, 2002; p 1 v. (various pagings).
-
(2002)
Biochemistry, 5th Ed.
, pp. 1v
-
-
Berg, J.M.1
Tymoczko, J.L.2
Stryer, L.3
-
3
-
-
83755181765
-
The tricarboxylic acid cycle in cyanobacteria
-
Zhang, S.; Bryant, D. A. The tricarboxylic acid cycle in cyanobacteria. Science 2011, 334, 1551-1553.
-
(2011)
Science
, vol.334
, pp. 1551-1553
-
-
Zhang, S.1
Bryant, D.A.2
-
4
-
-
0025697659
-
A reverse krebs cycle in photosynthesis: Consensus at last
-
Buchanan, B. B.; Arnon, D. I. A reverse krebs cycle in photosynthesis: Consensus at last. Photosynth Res. 1990, 24, 47-53.
-
(1990)
Photosynth Res.
, vol.24
, pp. 47-53
-
-
Buchanan, B.B.1
Arnon, D.I.2
-
5
-
-
0030802448
-
The reductive tricarboxylic acid cycle of carbon dioxide assimilation: Initial studies and purification of atp-citrate lyase from the green sulfur bacterium chlorobium tepidum
-
Wahlund, T. M.; Tabita, F. R. The reductive tricarboxylic acid cycle of carbon dioxide assimilation: Initial studies and purification of atp-citrate lyase from the green sulfur bacterium chlorobium tepidum. J. Bacteriol. 1997, 179, 4859-67.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 4859-4867
-
-
Wahlund, T.M.1
Tabita, F.R.2
-
6
-
-
0026458643
-
Accumulation and utilization of polysaccharide by hot-spring phototrophs during a light-dark transition
-
Konopka, A. Accumulation and utilization of polysaccharide by hot-spring phototrophs during a light-dark transition. FEMS Microbiol. Ecol. 1992, 102, 27-32.
-
(1992)
FEMS Microbiol. Ecol.
, vol.102
, pp. 27-32
-
-
Konopka, A.1
-
7
-
-
78049356011
-
Both forward and reverse tca cycles operate in green sulfur bacteria
-
Tang, K. H.; Blankenship, R. E. Both forward and reverse tca cycles operate in green sulfur bacteria. J. Biol. Chem. 2010, 285, 35848-54.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 35848-35854
-
-
Tang, K.H.1
Blankenship, R.E.2
-
8
-
-
0038313100
-
Autotrophic co2 fixation pathways in archaea (crenarchaeota)
-
Hugler, M.; Huber, H.; Stetter, K. O.; Fuchs, G. Autotrophic co2 fixation pathways in archaea (crenarchaeota). Arch. Microbiol. 2003, 179, 160-173.
-
(2003)
Arch. Microbiol.
, vol.179
, pp. 160-173
-
-
Hugler, M.1
Huber, H.2
Stetter, K.O.3
Fuchs, G.4
-
9
-
-
17644414104
-
Evidence for autotrophic co2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria
-
Hugler, M.; Wirsen, C. O.; Fuchs, G.; Taylor, C. D.; Sievert, S. M. Evidence for autotrophic co2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria. J. Bacteriol. 2005, 187, 3020-3027.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3020-3027
-
-
Hugler, M.1
Wirsen, C.O.2
Fuchs, G.3
Taylor, C.D.4
Sievert, S.M.5
-
10
-
-
0021950232
-
The co2 assimilation via the reductive tricarboxylic-acid cycle in an obligately autotrophic, aerobic hydrogen-oxidizing bacterium, hydro-genobacter- thermophilus
-
Shiba, H.; Kawasumi, T.; Igarashi, Y.; Kodama, T.; Minoda, Y. The co2 assimilation via the reductive tricarboxylic-acid cycle in an obligately autotrophic, aerobic hydrogen-oxidizing bacterium, hydro-genobacter- thermophilus. Arch. Microbiol. 1985, 141, 198-203.
-
(1985)
Arch. Microbiol.
, vol.141
, pp. 198-203
-
-
Shiba, H.1
Kawasumi, T.2
Igarashi, Y.3
Kodama, T.4
Minoda, Y.5
-
11
-
-
0027303801
-
Enzymes of the reductive citric-acid cycle in the autotrophic eubacterium aquifex-pyrophilus and in the archaebacterium thermo-proteus- neutrophilus
-
Beh, M.; Strauss, G.; Huber, R.; Stetter, K. O.; Fuchs, G. Enzymes of the reductive citric-acid cycle in the autotrophic eubacterium aquifex-pyrophilus and in the archaebacterium thermo-proteus- neutrophilus. Arch. Microbiol. 1993, 160, 306-311.
-
(1993)
Arch. Microbiol.
, vol.160
, pp. 306-311
-
-
Beh, M.1
Strauss, G.2
Huber, R.3
Stetter, K.O.4
Fuchs, G.5
-
12
-
-
80053227684
-
Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life?
-
Fuchs, G. Alternative pathways of carbon dioxide fixation: Insights into the early evolution of life? Annu. Rev. Microbiol. 2011, 65, 631-58.
-
(2011)
Annu. Rev. Microbiol.
, vol.65
, pp. 631-658
-
-
Fuchs, G.1
-
13
-
-
84895727036
-
Pathway thermodynamics highlights kinetic obstacles in central metabolism
-
Noor, E.; Bar-Even, A.; Flamholz, A.; Reznik, E.; Liebermeister, W.; Milo, R. Pathway thermodynamics highlights kinetic obstacles in central metabolism. PLoS Comput. Biol. 2014, 10, e1003483.
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003483
-
-
Noor, E.1
Bar-Even, A.2
Flamholz, A.3
Reznik, E.4
Liebermeister, W.5
Milo, R.6
-
14
-
-
84905457086
-
Simulating metabolism with statistical thermodynamics
-
Cannon, W. R. Simulating metabolism with statistical thermodynamics. PLoS One 2014, 9, e103582.
-
(2014)
PLoS One
, vol.9
, pp. e103582
-
-
Cannon, W.R.1
-
15
-
-
33847717110
-
Stochastic thermodynamics of chemical reaction networks
-
Schmiedl, T.; Seifert, U. Stochastic thermodynamics of chemical reaction networks. J. Chem. Phys. 2007, 126, 044101.
-
(2007)
J. Chem. Phys.
, vol.126
, pp. 044101
-
-
Schmiedl, T.1
Seifert, U.2
-
16
-
-
27144483816
-
Entropy production along a stochastic trajectory and an integral fluctuation theorem
-
Seifert, U. Entropy production along a stochastic trajectory and an integral fluctuation theorem. Phys. Rev. Lett. 2005, 95, 040602.
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 040602
-
-
Seifert, U.1
-
17
-
-
0000765761
-
Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences
-
Crooks, G. E. Entropy production fluctuation theorem and the nonequilibrium work relation for free energy differences. Phys. Rev. E 1999, 60, 2721-2726.
-
(1999)
Phys. Rev. E
, vol.60
, pp. 2721-2726
-
-
Crooks, G.E.1
-
18
-
-
0000806622
-
Equilibrium microstates which generate 2nd law violating steady-states
-
Evans, D. J.; Searles, D. J. Equilibrium microstates which generate 2nd law violating steady-states. Phys. Rev. E 1994, 50, 1645-1648.
-
(1994)
Phys. Rev. E
, vol.50
, pp. 1645-1648
-
-
Evans, D.J.1
Searles, D.J.2
-
19
-
-
84860711174
-
Thermodynamic metrics and optimal paths
-
Sivak, D. A.; Crooks, G. E. Thermodynamic metrics and optimal paths. Phys. Rev. Lett. 2012, 108, 190602.
-
(2012)
Phys. Rev. Lett.
, vol.108
, pp. 190602
-
-
Sivak, D.A.1
Crooks, G.E.2
-
20
-
-
84868275654
-
Geometry of thermodynamic control
-
Zulkowski, P. R.; Sivak, D. A.; Crooks, G. E.; DeWeese, M. R. Geometry of thermodynamic control. Phys. Rev. E 2012, 86, 041148.
-
(2012)
Phys. Rev. E
, vol.86
, pp. 041148
-
-
Zulkowski, P.R.1
Sivak, D.A.2
Crooks, G.E.3
DeWeese, M.R.4
-
21
-
-
33847786887
-
Optimal finite-time processes in stochastic thermodynamics
-
Schmiedl, T.; Seifert, U. Optimal finite-time processes in stochastic thermodynamics. Phys. Rev. Lett. 2007, 98, 108301.
-
(2007)
Phys. Rev. Lett.
, vol.98
, pp. 108301
-
-
Schmiedl, T.1
Seifert, U.2
-
22
-
-
79955820940
-
Stochastic thermodynamics of single enzymes and molecular motors
-
Seifert, U. Stochastic thermodynamics of single enzymes and molecular motors. Eur. Phys. J. E 2011, 34, 26.
-
(2011)
Eur. Phys. J. E
, vol.34
, pp. 26
-
-
Seifert, U.1
-
24
-
-
36549090599
-
Treatment of rotational isomers in free energy evaluations. Analysis of the evaluation of free energy differences by molecular dynamics simulations of systems with rotational isomeric states
-
Straatsma, T. P.; McCammon, J. A. Treatment of rotational isomers in free energy evaluations. Analysis of the evaluation of free energy differences by molecular dynamics simulations of systems with rotational isomeric states. J. Chem. Phys. 1989, 90, 3300-3304.
-
(1989)
J. Chem. Phys.
, vol.90
, pp. 3300-3304
-
-
Straatsma, T.P.1
McCammon, J.A.2
-
25
-
-
84861429699
-
Equilibrator - The biochemical thermodynamics calculator
-
Flamholz, A.; Noor, E.; Bar-Even, A.; Milo, R. Equilibrator-the biochemical thermodynamics calculator. Nucleic Acids Res. 2012, 40, D770-5.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D770-D775
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Milo, R.4
-
26
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in escherichia coli
-
Bennett, B. D.; Kimball, E. H.; Gao, M.; Osterhout, R.; Van Dien, S. J.; Rabinowitz, J. D. Absolute metabolite concentrations and implied enzyme active site occupancy in escherichia coli. Nat. Chem. Biol. 2009, 5, 593-9.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
27
-
-
84859369657
-
A survey of carbon fixation pathways through a quantitative lens
-
Bar-Even, A.; Noor, E.; Milo, R. A survey of carbon fixation pathways through a quantitative lens. J. Exp. Bot. 2012, 63, 2325-2342.
-
(2012)
J. Exp. Bot.
, vol.63
, pp. 2325-2342
-
-
Bar-Even, A.1
Noor, E.2
Milo, R.3
-
28
-
-
0000013996
-
Network theory of microscopic and macroscopic behavior of master equation systems
-
Schnakenberg, J. Network theory of microscopic and macroscopic behavior of master equation systems. Rev. Mod. Phys. 1976, 48, 571-585.
-
(1976)
Rev. Mod. Phys.
, vol.48
, pp. 571-585
-
-
Schnakenberg, J.1
-
29
-
-
84878966835
-
Glycolytic strategy as a tradeoff between energy yield and protein cost
-
Flamholz, A.; Noor, E.; Bar-Even, A.; Liebermeister, W.; Milo, R. Glycolytic strategy as a tradeoff between energy yield and protein cost. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 10039-10044.
-
(2013)
Proc. Natl. Acad. Sci. U.S.A.
, vol.110
, pp. 10039-10044
-
-
Flamholz, A.1
Noor, E.2
Bar-Even, A.3
Liebermeister, W.4
Milo, R.5
-
30
-
-
34447523907
-
Systematic evaluation of objective functions for predicting intracellular fluxes in escherichia coli
-
Schuetz, R.; Kuepfer, L.; Sauer, U. Systematic evaluation of objective functions for predicting intracellular fluxes in escherichia coli. Mol. Syst. Biol. 2007, 3, 119.
-
(2007)
Mol. Syst. Biol.
, vol.3
, pp. 119
-
-
Schuetz, R.1
Kuepfer, L.2
Sauer, U.3
-
31
-
-
0000874614
-
Natural selection as a physical principle
-
Lotka, A. J. Natural selection as a physical principle. Proc. Natl. Acad. Sci. U.S.A. 1922, 8, 151-4.
-
(1922)
Proc. Natl. Acad. Sci. U.S.A.
, vol.8
, pp. 151-154
-
-
Lotka, A.J.1
-
32
-
-
0031851438
-
Integrating metabolic pathway fluxes with gene-to-enzyme expression rates
-
Hochachka, P. W.; McClelland, G. B.; Burness, G. P.; Staples, J. F.; Suarez, R. K. Integrating metabolic pathway fluxes with gene-to-enzyme expression rates. Comp. Biochem. Physiol., Part B 1998, 120, 17-26.
-
(1998)
Comp. Biochem. Physiol., Part B
, vol.120
, pp. 17-26
-
-
Hochachka, P.W.1
McClelland, G.B.2
Burness, G.P.3
Staples, J.F.4
Suarez, R.K.5
-
33
-
-
80052319918
-
A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway
-
Li, X.; Wu, F.; Qi, F.; Beard, D. A. A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway. Database 2011, 2011, bar005.
-
(2011)
Database
, vol.2011
, pp. bar005
-
-
Li, X.1
Wu, F.2
Qi, F.3
Beard, D.A.4
-
34
-
-
0025701406
-
Group contributions for estimating standard gibbs energies of formation of biochemical-compounds in aqueous-solution
-
Mavrovouniotis, M. L. Group contributions for estimating standard gibbs energies of formation of biochemical-compounds in aqueous-solution. Biotechnol. Bioeng. 1990, 36, 1070-1082.
-
(1990)
Biotechnol. Bioeng.
, vol.36
, pp. 1070-1082
-
-
Mavrovouniotis, M.L.1
-
35
-
-
11744252033
-
Additivity rules for the estimation of molecular properties - Thermodynamic properties
-
Benson, S. W.; Buss, J. H. Additivity rules for the estimation of molecular properties - thermodynamic properties. J. Chem. Phys. 1958, 29, 546-572.
-
(1958)
J. Chem. Phys.
, vol.29
, pp. 546-572
-
-
Benson, S.W.1
Buss, J.H.2
-
36
-
-
84962360267
-
Estimating the thermodynamics and kinetics of chlorinated hydrocarbon degradation
-
Bylaska, E. J. Estimating the thermodynamics and kinetics of chlorinated hydrocarbon degradation. Theor. Chem. Acc. 2006, 116, 281-296.
-
(2006)
Theor. Chem. Acc.
, vol.116
, pp. 281-296
-
-
Bylaska, E.J.1
-
37
-
-
77951095380
-
Free energies of solvation with surface, volume, and local electrostatic effects and atomic surface tensions to represent the first solvation shell
-
Liu, J. J.; Kelly, C. P.; Goren, A. C.; Marenich, A. V.; Cramer, C. J.; Truhlar, D. G.; Zhan, C. G. Free energies of solvation with surface, volume, and local electrostatic effects and atomic surface tensions to represent the first solvation shell. J. Chem. Theory Comput. 2010, 6, 1109-1117.
-
(2010)
J. Chem. Theory Comput.
, vol.6
, pp. 1109-1117
-
-
Liu, J.J.1
Kelly, C.P.2
Goren, A.C.3
Marenich, A.V.4
Cramer, C.J.5
Truhlar, D.G.6
Zhan, C.G.7
|