Remarkable diversity of the lichen family Graphidaceae in the Amazon rain forest of Rondônia, Brazil

Phytotaxa

Volumn 189, Issue 1, 2014, Pages 087-136

  Cáceres, Marcela E S ^a   Aptroot, André ^b   Parnmen, Sittiporn ^c   Lücking, Robert ^d  

^a FEDERAL UNIVERSITY OF SERGIPE   (Brazil)

^b ABL HERBARIUM   (Netherlands)

^c MINISTRY OF PUBLIC HEALTH   (Thailand)

^d FIELD MUSEUM OF NATURAL HISTORY   (United States)

Author keywords

Amazonia; High species richness

Indexed keywords

CERES; COLUMELLA; DIORYGMA; FISSURINA; FUNGI; GRAPHIDACEAE; GRAPHIS; MACROSPORA; MYRIOTREMA; NIA; OCELLULARIA; OCELLULARIA PERFORATA; PINICOLA; PLATYGRAMME; PLATYGRAMME CAESIOPRUINOSA;

EID: 84919621335     PISSN: 11793155     EISSN: 11793163     Source Type: Journal    
DOI: 10.11646/phytotaxa.189.1.8     Document Type: Article

References (79)

1. Adanson, M. (1763) Familles des Plantes. Vol. II. Paris. http://dx.doi.org/10.5962/bhl.title.271
2. Ahti, T. (2000) Cladoniaceae. Flora Neotropica Monograph 78: 1-362.
3. Aptroot, A. (1997) Lichen biodiversity in Papua New Guinea, with the report of 173 species on one tree. Bibliotheca Lichenologica 68: 203-213.
4. Aptroot, A. (1998) New lichens and lichen records from Papua New Guinea, with the description of Crustospathula, a new genus in the Bacidiaceae. Tropical Bryology 14: 25-34.
5. Aptroot, A. & Cáceres, M.E.S. (2013) Pyrenocarpous lichens (except Trypetheliaceae) in Rondônia. Lichenologist 45: 763-785 . http://dx.doi.org/10.1017/s0024282913000534
6. Aptroot, A. & Cáceres, M.E.S. (2014a) New lichen species from termite nests in rainforest in Brazilian Rondônia and adjacent Amazonas. Lichenologist 46: 365-372. http://dx.doi.org/10.1017/s0024282913000340
7. Aptroot, A. & Cáceres, M.E.S. (2014b) A key to the corticolous microfoliose, foliose and related crustose lichens from Rondônia, Brazil, with the description of four new species. Lichenologist 46(06): 763-799. http://dx.doi.org/10.1017/S0024282914000358
8. Aptroot, A., Lücking, R., Sipman, H.J.M., Umaña, L. & Chaves, J.L. (2008) Pyrenocarpous lichens with bitunicate asci: a first assessment of the lichen biodiversity inventory in Costa Rica. Bibliotheca Lichenologica 97: 1-162.
9. Aptroot, A., Sipman, H.J.M . & Cáceres, M.E.S. (2013) Twenty-one new species of Pyrenula from South America, with a note on over-mature ascospores. Lichenologist 45: 169-198. http://dx.doi.org/10.1017/s0024282912000734
10. Archer, A.W. (2007) Key and checklist for the lichen family Graphidaceae (lichenised Ascomycota) in the Solomon Islands. Systematics and Biodiversity 5: 9-22. http://dx.doi.org/10.1017/s1477200006002040
11. Archer, A. W. (2009). Graphidaceae. Flora of Australia 57: 84-194.
12. Cáceres, M.E.S., Rivas Plata, E. & Lücking, R. (2012) Malmographina, a new genus for Graphina malmei (Ascomycota: Ostropales: Graphidaceae). Lichenologist 44: 115-120. http://dx.doi.org/10.1017/s0024282911000697
13. Cáceres, M.E.S., Aptroot, A. & Ertz, D. (2014) Some new Arthoniales from the Amazon, Rondônia, Brazil. Lichenologist 46: 573-588. http://dx.doi.org/10.1017/S0024282914000036
14. Clements, F.E. (1909) The genera of fungi. New York.
15. Colinvaux, P.A., de Oliveira, P.E. & Bush, M.B. (2000) Amazonian and neotropical plant communities on glacial time-scales: the failure of the aridity and refuge hypotheses. Quaternary Science Reviews 19: 141-169. http://dx.doi.org/10.1016/s0277-3791(99)00059-1
16. Eschweiler, F.G. (1824) Systema lichenum, genera exhibens rite distincta, pluribus novis adaucta. Nürnberg.
17. Fée, A.L.A. (1825) Essai sur les cryptogames des écorces exotiques officinales. Paris.
18. Fée, A.L.A. (1874) Matériaux pour une flore lichénologique du Brésil, II. Les Graphidées. Bulletin de la Societé Botanique de France 21: 21-32.
19. Frisch, A. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae I. The lichen family Thelotremataceae in Africa. Bibliotheca Lichenologica 92: 3-370.
20. Frisch, A. & Kalb, K. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae II. A monograph of Thelotremataceae with a complex structure of the columella. Bibliotheca Lichenologica 92: 371-516.
21. Frisch, A. & Kalb, K. (2009) Chapsa species (Thelotremataceae) from Brazil. Bibliotheca Lichenologica 99: 133-142.
22. Frisch, A., Kalb, K. & Grube, M. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae. Bibliotheca Lichenologica 92: 1-556.
23. Frisch, A. & Ohmura, Y. (2012) Chaspa leprieurii, Ocellularia cavata and O. pyrenuloides (Graphidaceae, lichenized Ascomycota) new to Japan. Bulletin of the National Museum of Nature and Science Series B 38: 87-92.
24. Hale, M.E. (1973) Studies on the lichen family Thelotremataceae. 1. Phytologia 26: 413-420.
25. Hale, M.E. (1974a) Morden-Smithsonian Expedition to Dominica: The lichens (Thelotremataceae). Smithsonian Contributions to Botany 16: 1-46. http://dx.doi.org/10.5479/si.0081024x.16
26. Hale, M.E. (1974b) Studies on the lichen family Thelotremataceae. 2. Phytologia 27: 490-501.
27. Hale, M.E. (1978) A revision of the lichen family Thelotremataceae in Panama. Smithsonian Contributions to Botany 38: 1-60. http://dx.doi.org/10.5479/si.0081024x.38
28. Hale, M.E. (1980) Generic delimitation in the lichen family Thelotremataceae. Mycotaxon 11: 130-138.
29. Hale, M.E. (1981) A revision of the lichen family Thelotremataceae in Sri Lanka. Bulletin of the British Museum (Natural History), Botany Series 8: 227-332.
30. Hooghiemstra, H. & van der Hammen, T. (1998) Neogene and Quaternary development of the neotropical rain forest: the forest refugia hypothesis, and a literature overview. Earth-Science Reviews 44: 147-183. http://dx.doi.org/10.1016/s0012-8252(98)00027-0
31. Hue, A. (1891) Lichenes exoticos a professore W. Nylander descriptos vel recognitos et in herbario musei Parisiense pro maxima parte asservatos in ordine systematico deposuit. Archives du 3, Sér. 3: 33-120. http://dx.doi.org/10.5962/bhl.title.82290
32. Kalb, K. (2009) New taxa and new records of thelotremoid Graphidaceae. Herzogia 22: 17-42.
33. Kalb, K., Staiger, B. & Elix, J.A. (2004) A monograph of the lichen genus Diorygma-a first attempt. Symbolae Botanicae Upsalienses 34(1): 133-181.
34. Komposch, H. & Hafellner, J. (1999) List of lichenized fungi so far observed in the tropical lowland rain forest plot Surumoni (Venezuela, Estado Amazonas). Fritschiana 19: 1-10.
35. Kraichak, E., Parnmen, S., Lücking, R., Rivas Plata, E., Aptroot, A., Cáceres, M.E.S., Ertz, D., Mangold, A., Mercado-Díaz, J.A., Papong, K., Van den Broeck, D., Weerakoon, G. & Lumbsch, H.T. (2014) Revisiting the phylogeny of Ocellularieae, the second largest tribe within Graphidaceae (lichenized Ascomycota: Ostropales). Phytotaxa 189(1): 52-81. http://dx.doi.org/10.11646/phytotaxa.189.1.6
36. Lücking, R. (2008) Foliicolous lichenized fungi. Flora Neotropica Monograph 103: 1-866.
37. Lücking, R. (2009) The taxonomy of the genus Graphis sensu Staiger (Ascomycota: Ostropales: Graphidaceae). Lichenologist41: 319-362. http://dx.doi.org/10.1017/s0024282909008524
38. Lücking, R. & Rivas Plata, E. (2008) Clave y guía ilustrada para géneros de Graphidaceae. Glalia 1: 1-41.
39. Lücking, R, Archer, A.W. & Aptroot, A, (2009) A world-wide key to the genus Graphis (Ostropales: Graphidaceae). Lichenologist 41: 363-452. http://dx.doi.org/10.1017/s0024282909008305
40. th Tuckerman Workshop. Bulletin of the Florida Museum of Natural History, Biological Sciences 49: 127-186.
41. Lumbsch, H.T., Ahti, T., Altermann, S., Amo De Paz, G., Aptroot, A., Arup, U., Bárcenas Peña, A., Bawingan, P.A., Benatti, M.N., Betancourt, L., Björk, C.R., Boonpragob, K., Brand, M., Bungartz, F., Cáceres, M.E.S., Candan, M, Chaves, J.L., Clerc, P., Common, R., Coppins, B.J., Crespo, A., Dal Forno, M., Divakar, P.K., Duya, M. V., Elix, J.A., Elvebakk, A., Fankhauser, J.D., Farkas, E., Ferraro, L.I., Fischer, E., Galloway, D.J., Gaya, E., Giralt, M., Goward, T., Grube, M., Hafellner, J., Hernández M., J.E., Herrera Campos, M.A., Kalb, K., Kärnefelt, I., Kantvilas, G., Killmann, D., Kirika, P., Knudsen, K., Komposch, H., Kondratyuk, S., Lawrey, J.D., Mangold, A., Marcelli, M.P., Mccune, B., Ines Messuti, M., Michlig, A., Miranda González, R., Moncada, B., Naikatini, A., Nelsen, M.P., Øvstedal, D.O., Palice, Z., Papong, K., Parnmen, S., Pérez-Ortega, S., Printzen, C., Rico, V.J., Robayo, J., Rosabal, D., Ruprecht, U., Salazar Allen, N., Sancho, L., Santos De Jesus, L., Santos Vieira, T., Schultz, M., Seaward, M.R.D., Sérusiaux, E., Schmitt, I., Sipman, H.J.M., Sohrabi, M., Søchting, U., Zeuthen Søgaard, M., Sparrius, L.B., Spielmann, A., Spribille, T., Sutjaritturakan, J., Thammathaworn, A., Thell, A., Thor, G., Thüs, H., Timdal, E., Truong, C., Türk, R., Umaña Tenorio, L., Upreti, D.K., Van Den Boom, P., Vivas Rebuelta, M., Wedin, M., Will-Wolf, S., Wirth, V., Wirtz, N., Yahr, R., Yeshitela, K., Ziemmeck, F., Wheeler, T. & Lücking, R. (2011) One hundred new species of lichenized fungi: a signature of undiscovered global diversity. Phytotaxa 18: 1-127.
42. http://dx.doi.org/10.11646/phytotaxa.189.1.5
43. Mangold, A., Eli, J.A. & Lumbsch, H.T. (2009) Thelotremataceae. Flora of Australia 57: 195-420.
44. Massalongo, A.B. (1860) Esame comparativo di alcuni generi di licheni. Atti Reale Istituto Veneto Scientia Letteri Arti ser. 3,5: 247-276, 313-337.
45. Mercado-Diaz, J.A., Lücking, R. & Parnmen, S. (2014) Two new genera and twelve new species of Graphidaceae from Puerto Rico: a case for higher endemism of lichenized fungi in islands of the Caribbean? Phytotaxa 189(1): 186-203. http://dx.doi.org/10.11646/phytotaxa.189.1.14
46. Meyer, G.F.W. (1825) Nebenstunden meiner Beschaefftigungen im Gebiete der Pflanzenkunde. Erster Theil. Göttingen.
47. Montagne, C. (1842) Troisième centurie de plantes cellulaires exotiques nouvelles, Décades V-VIII. Annales des Sciences Naturelles, Botanie 18: 241-282.
48. Montagne, C. (1845) Plantae cellulares quas in insulis Philippinensibus a cl. Cuming collectas recensuit observationibus nonnullis descriptionibusque illustravit. London Journal of Botany 4: 1-6.
49. Müller, J. (1881) Lichenologische Beiträge 14. Flora 64: 505-511, 513-527.
50. Müller, J. (1882) Lichenologische Beiträge 16. Flora 65: 483-490, 499-505, 515-519.
51. Müller, J. (1887a) Lichenologische Beiträge 26. Flora 70: 268-273, 283-288, 316-322, 336-338, 396-402, 423-429.
52. Müller, J. (1887b) Graphideae Féeanae inclus. trib. affinibus nec non Graphidaea exoticae Acharii, El. Friesii et Zenkeri e novo studio speciminum originalium expositae et in novam dispositionem ordinatae. Mémoirs de la Société de Physique et Histore naturelle de Genève 29(8): 1-80.
53. Müller, J. (1892) Lichenes exotici. Hedwigia 31: 276-288.
54. Nakanishi, M., Kashiwadani, H. & Moon, K.H. (2003) Taxonomical notes on Japanese Graphidaceae (Ascomycotina), including some new combinations. Bulletin of the National Science Museum (Tokyo), Series B (Botany) 29: 83-90.
55. Orange, A, James, P.W., White, F.J. (2010) Microchemical methods for the identification of lichens. 2nd Ed. British Lichen Society, London.
56. Papong, K.B, Boonpragob, K., Mangold, A., Divakar, P.K. & Lumbsch, H.T. (2010) Thelotremoid lichen species recently described from Thailand: a re-evaluation. Lichenologist 42: 131-137. http://dx.doi.org/10.1017/s0024282909990405
57. Papong, K.B., Lücking, R., Kraichak, E., Parnmen, S., Von Konrat, M. & Lumbsch, H.T. (2014) Preliminary insights into the diversity of the lichen family Graphidaceae in New Caledonia (Ostropales, Ascomycota), with the description of 23 new species. Phytotaxa 189(1): 204-231. http://dx.doi.org/10.11646/phytotaxa.189.1.15
58. Parnmen, S., Lücking, R. & Lumbsch, H.T. (2012) Phylogenetic classification at generic level in the absence of distinct phylogenetic patterns of phenotypical variation: A case study in Graphidaceae (Ascomycota). PLoS One 7(12): e51392. http://dx.doi.org/10.1371/journal.pone.0051392
59. Parnmen, S., Cáceres, M.E.S., Lücking, R. & Lumbsch, H.T. (2013) Myriochapsa and Nitidochapsa, two new genera in Graphidaceae (Ascomycota: Ostropales) for chroodiscoid species in the Ocellularia clade. Bryologist 116: 127-133. http://dx.doi.org/10.1639/0007-2745-116.2.127
60. Redinger, K. (1933) Neue und wenig bekannte Flechten aus Brasilien. Hedwigia 73: 54-67.
61. Redinger, K. (1936) Thelotremataceae brasilienses imprimis e herbario Regnelliano cognitae praetereaque in herbariis Krempelhuberi, Mülleri Arg., Nylanderi, Wainionis et Zahlbruckneri asservatae. Arkiv för Botanik 28A(8): 1-122.
62. Rivas Plata, E. & Lücking, R. (2013) High diversity of Graphidaceae (lichenized Ascomycota: Ostropales) in Amazonian Perú. Fungal Diversity 58: 13-52. http://dx.doi.org/10.1007/s13225-012-0172-y
63. Rivas Plata, E. & Lumbsch, H.T. (2011) Parallel evolution and phenotypic divergence in lichenized fungi: a case study in the lichen-forming fungal family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales). Molecular Phylogenetics and Evolution 61: 45-63. http://dx.doi.org/10.1016/j.ympev.2011.04.025
64. Rivas Plata, E. Lücking, R. & Lumbsch, H.T. (2008) When family matters: an analysis of Thelotremataceae (lichenized Ascomycota: Ostropales) as bioindicators of ecological continuity in tropical forests. Biodiversity and Conservation 17: 1319-1351. http://dx.doi.org/10.1007/s10531-007-9289-9
65. Rivas Plata, E., Lücking, R., Sipman, H.J.M., Mangold, A., Kalb, K. & Lumbsch, H.T. (2010). A world-wide key to the thelotremoid Graphidaceae, excluding the Ocellularia-Myriotrema-Stegobolus clade. Lichenologist 42: 187-189. http://dx.doi.org/10.1017/s0024282909990491
66. Rivas-Plata, E., Hernández, J.E.M., Lücking, R., Staiger, B., Kalb, K. & Cáceres, M.E.S. (2011) Graphis is two genera: A remarkable case of parallel evolution in lichenized Ascomycota. Taxon 60: 99-107.
67. Rivas Plata, E., Lücking, R. & Lumbsch, H.T. (2012a) Molecular phylogeny and systematics of the Ocellularia clade (Ascomycota: Ostropales: Graphidaceae). Taxon 61: 1161-1179.
68. Rivas Plata, E., Lücking, R. & Lumbsch, H.T. (2012b) A new classification for the family Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales). Fungal Diversity 52: 107-121. http://dx.doi.org/10.1007/s13225-011-0135-8
69. Rivas Plata, E., Parnmen, S, Staiger, B., Mangold, A., Frisch, A., Weerakoon, G., Hernández M., J.E., Cáceres, M.E.S., Kalb, K., Sipman, H.J.M., Common, R.S., Lücking, R. & Lumbsch, H.T. (2013) A molecular phylogeny of Graphidaceae (Ascomycota: Lecanoromycetes: Ostropales) including 437 species. MycoKeys 5: 55-94. http://dx.doi.org/10.3897/mycokeys.6.3482
70. Schumm, F. & Aptroot, A. (2012) A microscopical atlas of some lichens from SE-Asia (Thailand, Cambodia, Philippines, Vietnam). Books on Demand, Norderstedt. 2 Vols.
71. Sipman, H.J.M. & Aptroot, A. (1992) Results of a botanical expedition to Mount Roraima, Guyana. II. Lichens. Tropical Bryology 5: 79-107.
72. Sipman, H.J.M., Lücking, R., Aptroot, A., Kalb, K., Chaves, J.L. & Umaña, L. (2012) A first assessment of the Ticolichen biodiversity inventory in Costa Rica and adjacent areas: the thelotremoid Graphidaceae (Ascomycota: Ostropales). Phytotaxa 55: 1-214.
73. Staiger, B. (2002) Die Flechtenfamilie Graphidaceae. Studien in Richtung einer natürlicheren Gliederung. Bibliotheca Lichenologica 85: 1-526.
74. Staiger, B. & Kalb, K. (1999) Acanthothecis and other graphidioid lichens with warty periphysoids or paraphysis-tips. Mycotaxon 73: 69-134.
75. Thell, A., Crespo, A. Divakar, P.K., Kärnefelt, I., Leavitt, S.D., Lumbsch, H.T. & Seaward, M.R.D. (2012) A review of the lichen family Parmeliaceae. Nordic Journal of Botany 30: 641-664. http://dx.doi.org/10.1111/j.1756-1051.2012.00008.x
76. Vainio, E.A. (1890) Étude sur la classification et la morphologie des lichens du Brésil I. Acta Societatis pro Fauna et Flora Fennica 7(2): 1-247. http://dx.doi.org/10.5962/bhl.title.2741
77. Vainio, E.A. (1921) Lichenes insularum Philippinarum III. Annales Academia Scientia Fennica, ser. A 15(6): 1-368.
78. Zahlbruckner, A. (1923) Catalogus Lichenum Universalis 2. Borntraeger, Leipzig.
79. Zahlbruckner, A. (1930) Lichenes (Übersicht über sämtliche bisher aus China bekannten Flechten). In: Handel-Mazetti, H., Symbolae sinicae. Botanische Ergebnisse der Expedition der Akademie der Wissenschaften in Wien nach Südwest-China 1914-1918. III. Springer,Wien.