-
1
-
-
0035167322
-
Common origin of four diverse families of large eukaryotic DNA viruses
-
Iyer LM, Aravind L, Koonin EV. 2001. Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 75:11720-11734. http://dx.doi.org/10.1128/JVI.75.23.11720-11734.2001.
-
(2001)
J Virol
, vol.75
, pp. 11720-11734
-
-
Iyer, L.M.1
Aravind, L.2
Koonin, E.V.3
-
2
-
-
33645076499
-
Evolutionary genomics of nucleo-cytoplasmic large DNA viruses
-
Iyer LM, Balaji S, Koonin EV, Aravind L. 2006. Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 117:156-184. http://dx.doi.org/10.1016/j.virusres.2006.01.009.
-
(2006)
Virus Res
, vol.117
, pp. 156-184
-
-
Iyer, L.M.1
Balaji, S.2
Koonin, E.V.3
Aravind, L.4
-
3
-
-
35949003882
-
Virusencoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS
-
Abergel C, Rudinger-Thirion J, Giegé R, Claverie JM. 2007. Virusencoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS. J Virol 81:12406-12417. http://dx.doi.org/10.1128/JVI.01107-07.
-
(2007)
J Virol
, vol.81
, pp. 12406-12417
-
-
Abergel, C.1
Rudinger-Thirion, J.2
Giegé, R.3
Claverie, J.M.4
-
4
-
-
77956633816
-
Identification of an L-rhamnose synthetic pathway in two nucleocytoplasmic large DNA viruses
-
Parakkottil Chothi M, Duncan GA, Armirotti A, Abergel C, Gurnon JR, Van Etten JL, Bernardi C, Damonte G, Tonetti M. 2010. Identification of an L-rhamnose synthetic pathway in two nucleocytoplasmic large DNA viruses. J Virol 84:8829-8838. http://dx.doi.org/10.1128/JVI.00770-10.
-
(2010)
J Virol
, vol.84
, pp. 8829-8838
-
-
Parakkottil Chothi, M.1
Duncan, G.A.2
Armirotti, A.3
Abergel, C.4
Gurnon, J.R.5
Van Etten, J.L.6
Bernardi, C.7
Damonte, G.8
Tonetti, M.9
-
5
-
-
84872048186
-
Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes
-
Jeudy S, Abergel C, Claverie JM, Legendre M. 2012. Translation in giant viruses: a unique mixture of bacterial and eukaryotic termination schemes. PLoS Genet 8:e1003122. http://dx.doi.org/10.1371/journal.pgen.1003122.
-
(2012)
PLoS Genet
, vol.8
-
-
Jeudy, S.1
Abergel, C.2
Claverie, J.M.3
Legendre, M.4
-
6
-
-
84890413091
-
Characterization of a UDP-N-acetylglucosamine biosynthetic pathway encoded by the giant DNA virus Mimivirus
-
Piacente F, Bernardi C, Marin M, Blanc G, Abergel C, Tonetti MG. 2014. Characterization of a UDP-N-acetylglucosamine biosynthetic pathway encoded by the giant DNA virus Mimivirus. Glycobiology 24:51-61. http://dx.doi.org/10.1093/glycob/cwt089.
-
(2014)
Glycobiology
, vol.24
, pp. 51-61
-
-
Piacente, F.1
Bernardi, C.2
Marin, M.3
Blanc, G.4
Abergel, C.5
Tonetti, M.G.6
-
7
-
-
84906860673
-
Giant virus Megavirus chilensis encodes the biosynthetic pathway for uncommon acetamido sugars
-
Piacente F, De Castro C, Jeudy S, Molinaro A, Salis A, Damonte G, Bernardi C, Abergel C, Tonetti M. 2014. Giant virus Megavirus chilensis encodes the biosynthetic pathway for uncommon acetamido sugars. J Biol Chem 289:24428-24439. http://dx.doi.org/10.1074/jbc.M114.588947.
-
(2014)
J Biol Chem
, vol.289
, pp. 24428-24439
-
-
Piacente, F.1
De Castro, C.2
Jeudy, S.3
Molinaro, A.4
Salis, A.5
Damonte, G.6
Bernardi, C.7
Abergel, C.8
Tonetti, M.9
-
8
-
-
80054814749
-
Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae
-
Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM. 2011. Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 108:17486-17491. http://dx.doi.org/10.1073/pnas.1110889108.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 17486-17491
-
-
Arslan, D.1
Legendre, M.2
Seltzer, V.3
Abergel, C.4
Claverie, J.M.5
-
9
-
-
8844266097
-
The 1.2-megabase genome sequence of Mimivirus
-
Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM. 2004. The 1.2-megabase genome sequence of Mimivirus. Science 306:1344-1350. http://dx.doi.org/10.1126/science.1101485.
-
(2004)
Science
, vol.306
, pp. 1344-1350
-
-
Raoult, D.1
Audic, S.2
Robert, C.3
Abergel, C.4
Renesto, P.5
Ogata, H.6
La Scola, B.7
Suzan, M.8
Claverie, J.M.9
-
10
-
-
84870866549
-
Genomics of Megavirus and the elusive fourth domain of life
-
Legendre M, Arslan D, Abergel C, Claverie JM. 2012. Genomics of Megavirus and the elusive fourth domain of life. Commun Integr Biol 5:102-106. http://dx.doi.org/10.4161/cib.18624.
-
(2012)
Commun Integr Biol
, vol.5
, pp. 102-106
-
-
Legendre, M.1
Arslan, D.2
Abergel, C.3
Claverie, J.M.4
-
11
-
-
45149118680
-
Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus
-
Zauberman N, Mutsafi Y, Halevy DB, Shimoni E, Klein E, Xiao C, Sun S, Minsky A. 2008. Distinct DNA exit and packaging portals in the virus Acanthamoeba polyphaga mimivirus. PLoS Biol 6:e114. http://dx.doi.org/10.1371/journal.pbio.0060114.
-
(2008)
PLoS Biol
, vol.6
-
-
Zauberman, N.1
Mutsafi, Y.2
Halevy, D.B.3
Shimoni, E.4
Klein, E.5
Xiao, C.6
Sun, S.7
Minsky, A.8
-
13
-
-
77956761906
-
Mimivirus: the emerging paradox of quasiautonomous viruses
-
Claverie JM, Abergel C. 2010. Mimivirus: the emerging paradox of quasiautonomous viruses. Trends Genet 26:431-437. http://dx.doi.org/10.1016/j.tig.2010.07.003.
-
(2010)
Trends Genet
, vol.26
, pp. 431-437
-
-
Claverie, J.M.1
Abergel, C.2
-
14
-
-
77950525146
-
Vaccinia-like cytoplasmic replication of the giant Mimivirus
-
Mutsafi Y, Zauberman N, Sabanay I, Minsky A. 2010. Vaccinia-like cytoplasmic replication of the giant Mimivirus. Proc Natl Acad Sci USA 107:5978-5982. http://dx.doi.org/10.1073/pnas.0912737107.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5978-5982
-
-
Mutsafi, Y.1
Zauberman, N.2
Sabanay, I.3
Minsky, A.4
-
15
-
-
33751250835
-
Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products
-
Renesto P, Abergel C, Decloquement P, Moinier D, Azza S, Ogata H, Fourquet P, Gorvel JP, Claverie JM. 2006. Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products. J Virol 80:11678-11685. http://dx.doi.org/10.1128/JVI.00940-06.
-
(2006)
J Virol
, vol.80
, pp. 11678-11685
-
-
Renesto, P.1
Abergel, C.2
Decloquement, P.3
Moinier, D.4
Azza, S.5
Ogata, H.6
Fourquet, P.7
Gorvel, J.P.8
Claverie, J.M.9
-
16
-
-
84888016591
-
"Megavirales," a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses
-
Colson P, De Lamballerie X, Yutin N, Asgari S, Bigot Y, Bideshi DK, Cheng XW, Federici BA, Van Etten JL, Koonin EV, La Scola B, Raoult D. 2013. "Megavirales," a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses. Arch Virol 158:2517-2521. http://dx.doi.org/10.1007/s00705-013-1768-6.
-
(2013)
Arch Virol
, vol.158
, pp. 2517-2521
-
-
Colson, P.1
De Lamballerie, X.2
Yutin, N.3
Asgari, S.4
Bigot, Y.5
Bideshi, D.K.6
Cheng, X.W.7
Federici, B.A.8
Van Etten, J.L.9
Koonin, E.V.10
La Scola, B.11
Raoult, D.12
-
17
-
-
84868146121
-
Provirophages and transpovirons as the diverse mobilome of giant viruses
-
Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D. 2012. Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc Natl Acad Sci USA 109:18078-18083. http://dx.doi.org/10.1073/pnas.1208835109.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 18078-18083
-
-
Desnues, C.1
La Scola, B.2
Yutin, N.3
Fournous, G.4
Robert, C.5
Azza, S.6
Jardot, P.7
Monteil, S.8
Campocasso, A.9
Koonin, E.V.10
Raoult, D.11
-
18
-
-
84876156192
-
Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage
-
Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV. 2012. Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the megavirus lineage. Genome Biol Evol 4:1324-1330. http://dx.doi.org/10.1093/gbe/evs109.
-
(2012)
Genome Biol Evol
, vol.4
, pp. 1324-1330
-
-
Yoosuf, N.1
Yutin, N.2
Colson, P.3
Shabalina, S.A.4
Pagnier, I.5
Robert, C.6
Azza, S.7
Klose, T.8
Wong, J.9
Rossmann, M.G.10
La Scola, B.11
Raoult, D.12
Koonin, E.V.13
-
19
-
-
84898019978
-
Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae
-
Yoosuf N, Pagnier I, Fournous G, Robert C, La Scola B, Raoult D, Colson P. 2014. Complete genome sequence of Courdo11 virus, a member of the family Mimiviridae. Virus Genes 48:218-223. http://dx.doi.org/10.1007/s11262-013-1016-x.
-
(2014)
Virus Genes
, vol.48
, pp. 218-223
-
-
Yoosuf, N.1
Pagnier, I.2
Fournous, G.3
Robert, C.4
La Scola, B.5
Raoult, D.6
Colson, P.7
-
21
-
-
0016655887
-
The effect of the presence of the metal prosthetic groups on the subunit structure of bovine superoxide dismutase in sodium dodecyl sulfate
-
Marmocchi F, Caulini G, Venardi G, Cocco D, Calabrese L, Rotilio G. 1975. The effect of the presence of the metal prosthetic groups on the subunit structure of bovine superoxide dismutase in sodium dodecyl sulfate. Physiol Chem Phys 7:465-471. http://dx.doi.org/10.1016/0301-0104(75)87030-3.
-
(1975)
Physiol Chem Phys
, vol.7
, pp. 465-471
-
-
Marmocchi, F.1
Caulini, G.2
Venardi, G.3
Cocco, D.4
Calabrese, L.5
Rotilio, G.6
-
22
-
-
0015501473
-
A direct demonstration of the catalytic action of superoxide dismutase through the use of pulse radiolysis
-
Klug D, Rabani J, Fridovich I. 1972. A direct demonstration of the catalytic action of superoxide dismutase through the use of pulse radiolysis. J Biol Chem 247:4839-4842. http://www.jbc.org/content/247/15/4839.
-
(1972)
J Biol Chem
, vol.247
, pp. 4839-4842
-
-
Klug, D.1
Rabani, J.2
Fridovich, I.3
-
23
-
-
0029918423
-
Analysis of 94 kb of the Chlorella virus PBCV-1 330-kb genome: map positions 88 to 182
-
Lu Z, Li Y, Que Q, Kutish GF, Rock DL, Van Etten JL. 1996. Analysis of 94 kb of the Chlorella virus PBCV-1 330-kb genome: map positions 88 to 182. Virology 216:102-123. http://dx.doi.org/10.1006/viro.1996.0038.
-
(1996)
Virology
, vol.216
, pp. 102-123
-
-
Lu, Z.1
Li, Y.2
Que, Q.3
Kutish, G.F.4
Rock, D.L.5
Van Etten, J.L.6
-
24
-
-
84908010601
-
Chlorovirus PBCV-1 encodes an active copper-zinc superoxide dismutase
-
Kang M, Duncan GA, Kuszynski C, Oyler G, Zheng J, Becker DF, Van Etten JL. 2014. Chlorovirus PBCV-1 encodes an active copper-zinc superoxide dismutase. J Virol 88:12541-12550. http://dx.doi.org/10.1128/JVI.02031-14.
-
(2014)
J Virol
, vol.88
, pp. 12541-12550
-
-
Kang, M.1
Duncan, G.A.2
Kuszynski, C.3
Oyler, G.4
Zheng, J.5
Becker, D.F.6
Van Etten, J.L.7
-
25
-
-
0025914179
-
A baculovirus homolog of a Cu/Zn superoxide dismutase gene
-
Tomalski MD, Eldridge R, Miller LK. 1991. A baculovirus homolog of a Cu/Zn superoxide dismutase gene. Virology 184:149-161. http://dx.doi.org/10.1016/0042-6822(91)90831-U.
-
(1991)
Virology
, vol.184
, pp. 149-161
-
-
Tomalski, M.D.1
Eldridge, R.2
Miller, L.K.3
-
26
-
-
0025828433
-
Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat
-
Smith GL, Chan YS, Howard ST. 1991. Nucleotide sequence of 42 kbp of vaccinia virus strain WR from near the right inverted terminal repeat. J Gen Virol 72:1349-1376. http://dx.doi.org/10.1099/0022-1317-72-6-1349.
-
(1991)
J Gen Virol
, vol.72
, pp. 1349-1376
-
-
Smith, G.L.1
Chan, Y.S.2
Howard, S.T.3
-
27
-
-
0033604621
-
The complete genome sequence of Shope (rabbit) fibroma virus
-
Willer DO, McFadden G, Evans DH. 1999. The complete genome sequence of Shope (rabbit) fibroma virus. Virology 264:319-343. http://dx.doi.org/10.1006/viro.1999.0002.
-
(1999)
Virology
, vol.264
, pp. 319-343
-
-
Willer, D.O.1
McFadden, G.2
Evans, D.H.3
-
28
-
-
0033604517
-
The complete DNA sequence of myxoma virus
-
Cameron C, Hota-Mitchell S, Chen L, Barrett J, Cao JX, Macaulay C, Willer D, Evans D, McFadden G. 1999. The complete DNA sequence of myxoma virus. Virology 264:298-318. http://dx.doi.org/10.1006/viro.1999.0001.
-
(1999)
Virology
, vol.264
, pp. 298-318
-
-
Cameron, C.1
Hota-Mitchell, S.2
Chen, L.3
Barrett, J.4
Cao, J.X.5
Macaulay, C.6
Willer, D.7
Evans, D.8
McFadden, G.9
-
29
-
-
0034663280
-
Complete genomic sequence of the Amsacta moorei entomopoxvirus: analysis and comparison with other poxviruses
-
Bawden AL, Glassberg KJ, Diggans J, Shaw R, Farmerie W, Moyer RW. 2000. Complete genomic sequence of the Amsacta moorei entomopoxvirus: analysis and comparison with other poxviruses. Virology 274:120-139. http://dx.doi.org/10.1006/viro.2000.0449.
-
(2000)
Virology
, vol.274
, pp. 120-139
-
-
Bawden, A.L.1
Glassberg, K.J.2
Diggans, J.3
Shaw, R.4
Farmerie, W.5
Moyer, R.W.6
-
30
-
-
0034953975
-
The vaccinia virus superoxide dismutase-like protein (A45R) is a virion component that is nonessential for virus replication
-
Almazán F, Tscharke DC, Smith GL. 2001. The vaccinia virus superoxide dismutase-like protein (A45R) is a virion component that is nonessential for virus replication. J Virol 75:7018-7029. http://dx.doi.org/10.1128/JVI.75.15.7018-7029.2001.
-
(2001)
J Virol
, vol.75
, pp. 7018-7029
-
-
Almazán, F.1
Tscharke, D.C.2
Smith, G.L.3
-
31
-
-
0036343518
-
Leporipoxvirus Cu-Zn superoxide dismutase homologs inhibit cellular superoxide dismutase, but are not essential for virus replication or virulence
-
Cao JX, Teoh ML, Moon M, McFadden G, Evans DH. 2002. Leporipoxvirus Cu-Zn superoxide dismutase homologs inhibit cellular superoxide dismutase, but are not essential for virus replication or virulence. Virology 296:125-135. http://dx.doi.org/10.1006/viro.2002.1383.
-
(2002)
Virology
, vol.296
, pp. 125-135
-
-
Cao, J.X.1
Teoh, M.L.2
Moon, M.3
McFadden, G.4
Evans, D.H.5
-
32
-
-
4544282943
-
Amsacta moorei entomopoxvirus expresses an active superoxide dismutase
-
Becker MN, Greenleaf WB, Ostrov DA, Moyer RW. 2004. Amsacta moorei entomopoxvirus expresses an active superoxide dismutase. J Virol 78:10265-10275. http://dx.doi.org/10.1128/JVI.78.19.10265-10275.2004.
-
(2004)
J Virol
, vol.78
, pp. 10265-10275
-
-
Becker, M.N.1
Greenleaf, W.B.2
Ostrov, D.A.3
Moyer, R.W.4
-
33
-
-
0041856214
-
Leporipoxvirus Cu,Znsuperoxide dismutase (SOD) homologs are catalytically inert decoy proteins that bind copper chaperone for SOD
-
Teoh ML, Walasek PJ, Evans DH. 2003. Leporipoxvirus Cu,Znsuperoxide dismutase (SOD) homologs are catalytically inert decoy proteins that bind copper chaperone for SOD. J Biol Chem 278:33175-33184. http://dx.doi.org/10.1074/jbc.M300644200.
-
(2003)
J Biol Chem
, vol.278
, pp. 33175-33184
-
-
Teoh, M.L.1
Walasek, P.J.2
Evans, D.H.3
-
34
-
-
0034768609
-
Overexpression, purification, crystallizationandpreliminaryX-raydiffraction analysis ofCu,Znsuperoxidedismutase from Peking duck
-
Liu W, Li PW, Li GP, Zhu RH, Wang DC. 2001. Overexpression, purification, crystallizationandpreliminaryX-raydiffraction analysis ofCu,Znsuperoxidedismutase from Peking duck. Acta Crystallogr D Biol Crystallogr 57:1646-1649. http://dx.doi.org/10.1107/S0907444901011106.
-
(2001)
Acta Crystallogr D Biol Crystallogr
, vol.57
, pp. 1646-1649
-
-
Liu, W.1
Li, P.W.2
Li, G.P.3
Zhu, R.H.4
Wang, D.C.5
-
35
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams PD, Afonine PV, Bunkoczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH. 2010. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213-221. http://dx.doi.org/10.1107/S0907444909052925.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
36
-
-
66249112826
-
Decisionmaking in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard
-
Terwilliger TC, Adams PD, Read RJ, McCoy AJ, Moriarty NW, Grosse-Kunstleve RW, Afonine PV, Zwart PH, Hung LW. 2009. Decisionmaking in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard. Acta CrystallogrDBiol Crystallogr 65:582-601. http://dx.doi.org/10.1107/S0907444909012098.
-
(2009)
Acta CrystallogrDBiol Crystallogr
, vol.65
, pp. 582-601
-
-
Terwilliger, T.C.1
Adams, P.D.2
Read, R.J.3
McCoy, A.J.4
Moriarty, N.W.5
Grosse-Kunstleve, R.W.6
Afonine, P.V.7
Zwart, P.H.8
Hung, L.W.9
-
37
-
-
0242629052
-
Substructure search procedures for macromolecular structures
-
Grosse-Kunstleve RW, Adams PD. 2003. Substructure search procedures for macromolecular structures. Acta Crystallogr D Biol Crystallogr 59: 1966-1973. http://dx.doi.org/10.1107/S0907444903018043.
-
(2003)
Acta Crystallogr D Biol Crystallogr
, vol.59
, pp. 1966-1973
-
-
Grosse-Kunstleve, R.W.1
Adams, P.D.2
-
38
-
-
34447508216
-
Phaser crystallographic software
-
McCoy AJ, Grosse-Kunstleve RW, Adams PD, Winn MD, Storoni LC, Read RJ. 2007. Phaser crystallographic software. J Appl Crystallogr 40: 658-674. http://dx.doi.org/10.1107/S0021889807021206.
-
(2007)
J Appl Crystallogr
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
39
-
-
0033896691
-
Maximum-likelihood density modification
-
Terwilliger TC. 2000. Maximum-likelihood density modification. Acta Crystallogr D Biol Crystallogr 56:965-972. http://dx.doi.org/10.1107/S0907444900005072.
-
(2000)
Acta Crystallogr D Biol Crystallogr
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
40
-
-
84860273177
-
Towards automated crystallographic structure refinement with phenix. refine
-
Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD. 2012. Towards automated crystallographic structure refinement with phenix. refine. Acta Crystallogr D Biol Crystallogr 68:352-367. http://dx.doi.org/10.1107/S0907444912001308.
-
(2012)
Acta Crystallogr D Biol Crystallogr
, vol.68
, pp. 352-367
-
-
Afonine, P.V.1
Grosse-Kunstleve, R.W.2
Echols, N.3
Headd, J.J.4
Moriarty, N.W.5
Mustyakimov, M.6
Terwilliger, T.C.7
Urzhumtsev, A.8
Zwart, P.H.9
Adams, P.D.10
-
41
-
-
74549178560
-
MolProbity: all-atom structure validation for macromolecular crystallography
-
Chen VB, Arendall WB, Headd JJ, Keedy DA, Immormino RM, Kapral GJ, Murray LW, Richardson JS, Richardson DC. 2010. MolProbity: all-atom structure validation for macromolecular crystallography. Acta Crystallogr D Biol Crystallogr 66:16-21. http://dx.doi.org/10.1107/S0907444909042073.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 16-21
-
-
Chen, V.B.1
Arendall, W.B.2
Headd, J.J.3
Keedy, D.A.4
Immormino, R.M.5
Kapral, G.J.6
Murray, L.W.7
Richardson, J.S.8
Richardson, D.C.9
-
42
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402. http://dx.doi.org/10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
43
-
-
27144489108
-
Protein database searches using compositionally adjusted substitution matrices
-
Altschul SF, Wootton JC, Gertz EM, Agarwala R, Morgulis A, Schäffer AA, Yu YK. 2005. Protein database searches using compositionally adjusted substitution matrices. FEBS J 272:5101-5109. http://dx.doi.org/10.1111/j.1742-4658.2005.04945.x.
-
(2005)
FEBS J
, vol.272
, pp. 5101-5109
-
-
Altschul, S.F.1
Wootton, J.C.2
Gertz, E.M.3
Agarwala, R.4
Morgulis, A.5
Schäffer, A.A.6
Yu, Y.K.7
-
44
-
-
78651310799
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Federhen S, Feolo M, Fingerman IM, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Phan L, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, Wilbur WJ, Yaschenko E, Ye J. 2011. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 39:D38-D51. http://dx.doi.org/10.1093/nar/gkq1172.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D38-D51
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
DiCuccio, M.9
Federhen, S.10
Feolo, M.11
Fingerman, I.M.12
Geer, L.Y.13
Helmberg, W.14
Kapustin, Y.15
Landsman, D.16
Lipman, D.J.17
Lu, Z.18
Madden, T.L.19
Madej, T.20
Maglott, D.R.21
Marchler-Bauer, A.22
Miller, V.23
Mizrachi, I.24
Ostell, J.25
Panchenko, A.26
Phan, L.27
Pruitt, K.D.28
Schuler, G.D.29
Sequeira, E.30
Sherry, S.T.31
Shumway, M.32
Sirotkin, K.33
Slotta, D.34
Souvorov, A.35
Starchenko, G.36
Tatusova, T.A.37
Wagner, L.38
Wang, Y.39
Wilbur, W.J.40
Yaschenko, E.41
Ye, J.42
more..
-
45
-
-
3242878412
-
3DCoffeeigs: A web server for combining sequences and structures into a multiple sequence alignment
-
Poirot O, Suhre K, Abergel C, O'Toole E, Notredame C. 2004. 3DCoffeeigs: a web server for combining sequences and structures into a multiple sequence alignment. Nucleic Acids Res 32:W37-W40. http://dx.doi.org/10.1093/nar/gkh382.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W37-W40
-
-
Poirot, O.1
Suhre, K.2
Abergel, C.3
O'Toole, E.4
Notredame, C.5
-
46
-
-
0026021532
-
Three-dimensional structure of Cu,Znsuperoxide dismutase from spinach at 2.0 A resolution
-
Kitagawa Y, Tanaka N, Hata Y, Kusunoki M, Lee GP, Katsube Y, Asada K, Aibara S, Morita Y. 1991. Three-dimensional structure of Cu,Znsuperoxide dismutase from spinach at 2.0 A resolution. J Biochem 109: 477-485.
-
(1991)
J Biochem
, vol.109
, pp. 477-485
-
-
Kitagawa, Y.1
Tanaka, N.2
Hata, Y.3
Kusunoki, M.4
Lee, G.P.5
Katsube, Y.6
Asada, K.7
Aibara, S.8
Morita, Y.9
-
47
-
-
84901012308
-
Assessment of Dengue virus helicase and methyltransferase as targets for fragment-based drug discovery
-
Coutard B, Decroly E, Li C, Sharff A, Lescar J, Bricogne G, Barral K. 2014. Assessment of Dengue virus helicase and methyltransferase as targets for fragment-based drug discovery. Antiviral Res 106:61-70. http://dx.doi.org/10.1016/j.antiviral.2014.03.013.
-
(2014)
Antiviral Res
, vol.106
, pp. 61-70
-
-
Coutard, B.1
Decroly, E.2
Li, C.3
Sharff, A.4
Lescar, J.5
Bricogne, G.6
Barral, K.7
-
48
-
-
0031554917
-
Spectrophotometric assay for superoxide dismutase based on tetrazolium salt 3'-{1-[(phenylamino)-carbonyl]-3,4-tetrazolium}-bis(4-methoxy-6-nitro)benzenesulfonic acid hydrate reduction by xanthine-xanthine oxidase
-
Ukeda H, Maeda S, Ishii T, Sawamura M. 1997. Spectrophotometric assay for superoxide dismutase based on tetrazolium salt 3'-{1-[(phenylamino)-carbonyl]-3,4-tetrazolium}-bis(4-methoxy-6-nitro)benzenesulfonic acid hydrate reduction by xanthine-xanthine oxidase. Anal Biochem 251:206-209. http://dx.doi.org/10.1006/abio.1997.2273.
-
(1997)
Anal Biochem
, vol.251
, pp. 206-209
-
-
Ukeda, H.1
Maeda, S.2
Ishii, T.3
Sawamura, M.4
-
49
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E, Henrick K. 2007. Inference of macromolecular assemblies from crystalline state. J Mol Biol 372:774-797. http://dx.doi.org/10.1016/j.jmb.2007.05.022.
-
(2007)
J Mol Biol
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
50
-
-
0030802648
-
The copper chaperone or superoxide dismutase
-
Culotta VC, Klomp LW, Strain J, Casareno RL, Krems B, Gitlin JD. 1997. The copper chaperone or superoxide dismutase. J Biol Chem 272: 23469-23472. http://dx.doi.org/10.1074/jbc.272.38.23469.
-
(1997)
J Biol Chem
, vol.272
, pp. 23469-23472
-
-
Culotta, V.C.1
Klomp, L.W.2
Strain, J.3
Casareno, R.L.4
Krems, B.5
Gitlin, J.D.6
-
51
-
-
33745821631
-
Posttranslational modifications in Cu,Zn-superoxide dismutase and mutations associated with amyotrophic lateral sclerosis
-
Furukawa Y, O'Halloran TV. 2006. Posttranslational modifications in Cu,Zn-superoxide dismutase and mutations associated with amyotrophic lateral sclerosis. Antioxid Redox Signal 8:847-867. http://dx.doi.org/10.1089/ars.2006.8.847.
-
(2006)
Antioxid Redox Signal
, vol.8
, pp. 847-867
-
-
Furukawa, Y.1
O'Halloran, T.V.2
-
52
-
-
69249119419
-
Activation of Cu,Zn-superoxide dismutase in the absence of oxygen and the copper chaperone CCS
-
Leitch JM, Jensen LT, Bouldin SD, Outten CE, Hart PJ, Culotta VC. 2009. Activation of Cu,Zn-superoxide dismutase in the absence of oxygen and the copper chaperone CCS. J Biol Chem 284:21863-21871. http://dx.doi.org/10.1074/jbc.M109.000489.
-
(2009)
J Biol Chem
, vol.284
, pp. 21863-21871
-
-
Leitch, J.M.1
Jensen, L.T.2
Bouldin, S.D.3
Outten, C.E.4
Hart, P.J.5
Culotta, V.C.6
-
53
-
-
0037013224
-
Familial amyotrophic lateral sclerosis-associated mutations decrease the thermal stability of distinctly metallated species of human copper/zinc superoxide dismutase
-
Rodriguez JA, Valentine JS, Eggers DK, Roe JA, Tiwari A, Brown RH, Jr, Hayward LJ. 2002. Familial amyotrophic lateral sclerosis-associated mutations decrease the thermal stability of distinctly metallated species of human copper/zinc superoxide dismutase. J Biol Chem 277:15932-15937. http://dx.doi.org/10.1074/jbc.M112088200.
-
(2002)
J Biol Chem
, vol.277
, pp. 15932-15937
-
-
Rodriguez, J.A.1
Valentine, J.S.2
Eggers, D.K.3
Roe, J.A.4
Tiwari, A.5
Brown Jr., R.H.6
Hayward, L.J.7
-
54
-
-
76749156792
-
Characterization of a covalent polysulfane bridge in copper-zinc superoxide dismutase
-
You Z, Cao X, Taylor AB, Hart PJ, Levine RL. 2010. Characterization of a covalent polysulfane bridge in copper-zinc superoxide dismutase. Biochemistry 49:1191-1198. http://dx.doi.org/10.1021/bi901844d.
-
(2010)
Biochemistry
, vol.49
, pp. 1191-1198
-
-
You, Z.1
Cao, X.2
Taylor, A.B.3
Hart, P.J.4
Levine, R.L.5
-
55
-
-
0015228520
-
Study of the metal sites of copper proteins. Ligands of copper in hemocuprein
-
Rotilio G, Finazzi Agrò A, Calabrese L, Bossa F, Guerrieri P, Mondovì B. 1971. Study of the metal sites of copper proteins. Ligands of copper in hemocuprein. Biochemistry 10:616-621.
-
(1971)
Biochemistry
, vol.10
, pp. 616-621
-
-
Rotilio, G.1
Finazzi Agrò, A.2
Calabrese, L.3
Bossa, F.4
Guerrieri, P.5
Mondovì, B.6
-
56
-
-
0032489361
-
Role of the dimeric structure in Cu,Zn superoxide dismutase. pH-dependent, reversible denaturation of the monomeric enzyme from Escherichia coli
-
Battistoni A, Folcarelli S, Cervoni L, Polizio F, Desideri A, Giartosio A, Rotilio G. 1998. Role of the dimeric structure in Cu,Zn superoxide dismutase. pH-dependent, reversible denaturation of the monomeric enzyme from Escherichia coli. J Biol Chem 273:5655-5661. http://dx.doi.org/10.1074/jbc.273.10.5655.
-
(1998)
J Biol Chem
, vol.273
, pp. 5655-5661
-
-
Battistoni, A.1
Folcarelli, S.2
Cervoni, L.3
Polizio, F.4
Desideri, A.5
Giartosio, A.6
Rotilio, G.7
-
57
-
-
10744228811
-
Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets
-
Abergel C, Coutard B, Byrne D, Chenivesse S, Claude JB, Deregnaucourt C, Fricaux T, Gianesini-Boutreux C, Jeudy S, Lebrun R, Maza C, Notredame C, Poirot O, Suhre K, Varagnol M, Claverie JM. 2003. Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets. J Struct Funct Genomics 4:141-157. http://dx.doi.org/10.1023/A:1026177202925.
-
(2003)
J Struct Funct Genomics
, vol.4
, pp. 141-157
-
-
Abergel, C.1
Coutard, B.2
Byrne, D.3
Chenivesse, S.4
Claude, J.B.5
Deregnaucourt, C.6
Fricaux, T.7
Gianesini-Boutreux, C.8
Jeudy, S.9
Lebrun, R.10
Maza, C.11
Notredame, C.12
Poirot, O.13
Suhre, K.14
Varagnol, M.15
Claverie, J.M.16
-
58
-
-
84904790793
-
Deciphering key features in protein structures with the new ENDscript server
-
Robert X, Gouet P. 2014. Deciphering key features in protein structures with the new ENDscript server. Nucleic Acids Res 42:W320-W324. http://dx.doi.org/10.1093/nar/gku316.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. W320-W324
-
-
Robert, X.1
Gouet, P.2
-
59
-
-
0029878720
-
VMD-Visual Molecular Dynamics
-
Humphrey W, Dalke A, Schulten K. 1996. VMD-Visual Molecular Dynamics. J Mol Graphics 14:33-38. http://dx.doi.org/10.1016/0263-7855(96)00018-5.
-
(1996)
J Mol Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
|