-
1
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews 1995, 59:143-169.
-
(1995)
Microbiological Reviews
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
2
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford K.E., Chuzhanova N.A., Fry J.C., Jones A.J., Weightman A.J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Applied and Environmental Microbiology 2005, 71:7724-7736.
-
(2005)
Applied and Environmental Microbiology
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
4
-
-
0034061976
-
Sequence variation of the 16S to 23S rRNA spacer region in Salmonella enterica
-
Christensen H., Moller P.L., Vogensen F.K., Olsen J.E. Sequence variation of the 16S to 23S rRNA spacer region in Salmonella enterica. Research in Microbiology 2000, 151:37-42.
-
(2000)
Research in Microbiology
, vol.151
, pp. 37-42
-
-
Christensen, H.1
Moller, P.L.2
Vogensen, F.K.3
Olsen, J.E.4
-
5
-
-
0032954830
-
Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus
-
Chun J., Huq A., Colwell R.R. Analysis of 16S-23S rRNA intergenic spacer regions of Vibrio cholerae and Vibrio mimicus. Applied and Environmental Microbiology 1999, 65:2202-2208.
-
(1999)
Applied and Environmental Microbiology
, vol.65
, pp. 2202-2208
-
-
Chun, J.1
Huq, A.2
Colwell, R.R.3
-
6
-
-
0242552653
-
Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes
-
Coenye T., Vandamme P. Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes. FEMS Microbiology Letters 2003, 228:45-49.
-
(2003)
FEMS Microbiology Letters
, vol.228
, pp. 45-49
-
-
Coenye, T.1
Vandamme, P.2
-
7
-
-
58149200948
-
The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis
-
Cole J.R., Wang Q., Cardenas E., Fish J., Chai B., Farris R.J., et al. The Ribosomal Database Project: Improved alignments and new tools for rRNA analysis. Nucleic Acids Research 2009, 37:D141-D145.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. D141-D145
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
9
-
-
33644856111
-
IWoCS: Analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships
-
D'Auria G., Pushker R., Rodriguez-Valera F. IWoCS: Analyzing ribosomal intergenic transcribed spacers configuration and taxonomic relationships. Bioinformatics 2006, 22:527-531.
-
(2006)
Bioinformatics
, vol.22
, pp. 527-531
-
-
D'Auria, G.1
Pushker, R.2
Rodriguez-Valera, F.3
-
10
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis T.Z., Hugenholtz P., Larsen N., Rojas M., Brodie E.L., Keller K., et al. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 2006, 72:5069-5072.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
-
12
-
-
84919449551
-
-
Geneious v6.1.6.
-
Drummond, A. J., Ashton, B., Buxton, S., Cheung, M., Cooper, A., Duran, C., Field, M., Heled, J., Kearse, M., Markowitz, S., Moir, R., Stones-Havas, S., Sturrock, S., Thierer, T., Wilson, A., 2013. Geneious v6.1.6. http://www.geneious.com/.
-
(2013)
-
-
Drummond, A.J.1
Ashton, B.2
Buxton, S.3
Cheung, M.4
Cooper, A.5
Duran, C.6
Field, M.7
Heled, J.8
Kearse, M.9
Markowitz, S.10
Moir, R.11
Stones-Havas, S.12
Sturrock, S.13
Thierer, T.14
Wilson, A.15
-
14
-
-
0035176879
-
RISSC: A novel database for ribosomal 16S-23S RNA genes spacer regions
-
Garcia-Martinez J., Bescos I., Rodriguez-Sala J.J., Rodriguez-Valera F. RISSC: A novel database for ribosomal 16S-23S RNA genes spacer regions. Nucleic Acids Research 2001, 29:178-180.
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 178-180
-
-
Garcia-Martinez, J.1
Bescos, I.2
Rodriguez-Sala, J.J.3
Rodriguez-Valera, F.4
-
15
-
-
33645074130
-
Variation in the 16S-23S rRNA intergenic spacer regions in Vibrio parahaemolyticus strains are due to indels nearby their tRNAGlu
-
Gonzalez-Escalona N., Romero J., Guzman C.A., Espejo R.T. Variation in the 16S-23S rRNA intergenic spacer regions in Vibrio parahaemolyticus strains are due to indels nearby their tRNAGlu. FEMS Microbiology Letters 2006, 256:38-43.
-
(2006)
FEMS Microbiology Letters
, vol.256
, pp. 38-43
-
-
Gonzalez-Escalona, N.1
Romero, J.2
Guzman, C.A.3
Espejo, R.T.4
-
16
-
-
0344172783
-
The role of recombination and mutation in 16S-23S rDNA spacer rearrangements
-
Gurtler V. The role of recombination and mutation in 16S-23S rDNA spacer rearrangements. Gene 1999, 238:241-252.
-
(1999)
Gene
, vol.238
, pp. 241-252
-
-
Gurtler, V.1
-
17
-
-
0029057279
-
Typing of Staphylococcus aureus strains by PCR-amplification of variable-length 16S-23S rDNA spacer regions: Characterization of spacer sequences
-
Gurtler V., Barrie H.D. Typing of Staphylococcus aureus strains by PCR-amplification of variable-length 16S-23S rDNA spacer regions: Characterization of spacer sequences. Microbiology (Reading, England) 1995, 141(Pt. 5):1255-1265.
-
(1995)
Microbiology (Reading, England)
, vol.141
, pp. 1255-1265
-
-
Gurtler, V.1
Barrie, H.D.2
-
18
-
-
84877120397
-
New opportunities for improved ribotyping of C. difficile clinical isolates by exploring their genomes
-
Gurtler V., Grando D. New opportunities for improved ribotyping of C. difficile clinical isolates by exploring their genomes. Journal of Microbiological Methods 2013, 93:257-272.
-
(2013)
Journal of Microbiological Methods
, vol.93
, pp. 257-272
-
-
Gurtler, V.1
Grando, D.2
-
19
-
-
30944461986
-
Direct identification of slowly growing Mycobacterium species by analysis of the intergenic 16S-23S rDNA spacer region (ISR) using a GelCompar II database containing sequence based optimization for restriction fragment site polymorphisms (RFLPs) for 12 enzymes
-
Gurtler V., Harford C., Bywater J., Mayall B.C. Direct identification of slowly growing Mycobacterium species by analysis of the intergenic 16S-23S rDNA spacer region (ISR) using a GelCompar II database containing sequence based optimization for restriction fragment site polymorphisms (RFLPs) for 12 enzymes. Journal of Microbiological Methods 2006, 64:185-199.
-
(2006)
Journal of Microbiological Methods
, vol.64
, pp. 185-199
-
-
Gurtler, V.1
Harford, C.2
Bywater, J.3
Mayall, B.C.4
-
20
-
-
0030054296
-
New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
-
Gurtler V., Stanisich V.A. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology (Reading, England) 1996, 142(Pt. 1):3-16.
-
(1996)
Microbiology (Reading, England)
, vol.142
, pp. 3-16
-
-
Gurtler, V.1
Stanisich, V.A.2
-
21
-
-
0026094568
-
Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA
-
Gurtler V., Wilson V.A., Mayall B.C. Classification of medically important clostridia using restriction endonuclease site differences of PCR-amplified 16S rDNA. Journal of General Microbiology 1991, 137:2673-2679.
-
(1991)
Journal of General Microbiology
, vol.137
, pp. 2673-2679
-
-
Gurtler, V.1
Wilson, V.A.2
Mayall, B.C.3
-
23
-
-
0036084147
-
RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database
-
Harmsen D., Rothganger J., Frosch M., Albert J. RIDOM: Ribosomal Differentiation of Medical Micro-organisms Database. Nucleic Acids Research 2002, 30:416-417.
-
(2002)
Nucleic Acids Research
, vol.30
, pp. 416-417
-
-
Harmsen, D.1
Rothganger, J.2
Frosch, M.3
Albert, J.4
-
24
-
-
33644935021
-
Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity
-
Hunt D.E., Klepac-Ceraj V., Acinas S.G., Gautier C., Bertilsson S., Polz M.F. Evaluation of 23S rRNA PCR primers for use in phylogenetic studies of bacterial diversity. Applied and Environmental Microbiology 2006, 72:2221-2225.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 2221-2225
-
-
Hunt, D.E.1
Klepac-Ceraj, V.2
Acinas, S.G.3
Gautier, C.4
Bertilsson, S.5
Polz, M.F.6
-
25
-
-
77957772756
-
The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment
-
Kelly W.J., Leahy S.C., Altermann E., Yeoman C.J., Dunne J.C., Kong Z., et al. The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment. PLoS One 2010, 5:e11942.
-
(2010)
PLoS One
, vol.5
, pp. e11942
-
-
Kelly, W.J.1
Leahy, S.C.2
Altermann, E.3
Yeoman, C.J.4
Dunne, J.C.5
Kong, Z.6
-
26
-
-
58149179980
-
RrnDB: Documenting the number of rRNA and tRNA genes in bacteria and archaea
-
Lee Z.M., Bussema C., Schmidt T.M. rrnDB: Documenting the number of rRNA and tRNA genes in bacteria and archaea. Nucleic Acids Research 2009, 37:D489-D493.
-
(2009)
Nucleic Acids Research
, vol.37
, pp. D489-D493
-
-
Lee, Z.M.1
Bussema, C.2
Schmidt, T.M.3
-
27
-
-
84912024870
-
Atypical bacterial rRNA operon structure is prevalent within the Lachnospiraceae, and use of the 16S-23S rRNA internal transcribed spacer region for the rapid identification of ruminal Butyrivibrio and Pseudobutyrivibrio strains
-
Li D., Leahy S., Henderson G., Kelly W., Cookson A., Attwood G., et al. Atypical bacterial rRNA operon structure is prevalent within the Lachnospiraceae, and use of the 16S-23S rRNA internal transcribed spacer region for the rapid identification of ruminal Butyrivibrio and Pseudobutyrivibrio strains. Annals of Microbiology 2014, 10.1007/s13213-014-0806-2.
-
(2014)
Annals of Microbiology
-
-
Li, D.1
Leahy, S.2
Henderson, G.3
Kelly, W.4
Cookson, A.5
Attwood, G.6
-
28
-
-
0042932747
-
Ribosomal RNA and ribosomal proteins in corynebacteria
-
Martín J.F., Barreiro C., González-Lavado E., Barriuso M. Ribosomal RNA and ribosomal proteins in corynebacteria. Journal of Biotechnology 2003, 104:41-53.
-
(2003)
Journal of Biotechnology
, vol.104
, pp. 41-53
-
-
Martín, J.F.1
Barreiro, C.2
González-Lavado, E.3
Barriuso, M.4
-
29
-
-
23744479443
-
Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species
-
Mohamed A.M., Kuyper D.J., Iwen P.C., Ali H.H., Bastola D.R., Hinrichs S.H. Computational approach involving use of the internal transcribed spacer 1 region for identification of Mycobacterium species. Journal of Clinical Microbiology 2005, 43:3811-3817.
-
(2005)
Journal of Clinical Microbiology
, vol.43
, pp. 3811-3817
-
-
Mohamed, A.M.1
Kuyper, D.J.2
Iwen, P.C.3
Ali, H.H.4
Bastola, D.R.5
Hinrichs, S.H.6
-
30
-
-
15144358617
-
Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies
-
Perez Luz S., Rodriguez-Valera F., Lan R., Reeves P.R. Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. Journal of Bacteriology 1998, 180:2144-2151.
-
(1998)
Journal of Bacteriology
, vol.180
, pp. 2144-2151
-
-
Perez Luz, S.1
Rodriguez-Valera, F.2
Lan, R.3
Reeves, P.R.4
-
31
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., et al. SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 2007, 35:7188-7196.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
-
32
-
-
33750972041
-
The mosaic nature of intergenic 16S-23S rRNA spacer regions suggests rRNA operon copy number variation in Clostridium difficile strains
-
Sadeghifard N., Gurtler V., Beer M., Seviour R.J. The mosaic nature of intergenic 16S-23S rRNA spacer regions suggests rRNA operon copy number variation in Clostridium difficile strains. Applied and Environmental Microbiology 2006, 72:7311-7323.
-
(2006)
Applied and Environmental Microbiology
, vol.72
, pp. 7311-7323
-
-
Sadeghifard, N.1
Gurtler, V.2
Beer, M.3
Seviour, R.J.4
-
33
-
-
84892486136
-
Evaluation of 16SpathDB 2.0, an automated 16S rRNA gene sequence database, using 689 complete bacterial genomes
-
Teng J.L., Ho T.C., Yeung R.S., Wong A.Y., Wang H., Chen C., et al. Evaluation of 16SpathDB 2.0, an automated 16S rRNA gene sequence database, using 689 complete bacterial genomes. Diagnostic Microbiology and Infectious Disease 2014, 78:105-115.
-
(2014)
Diagnostic Microbiology and Infectious Disease
, vol.78
, pp. 105-115
-
-
Teng, J.L.1
Ho, T.C.2
Yeung, R.S.3
Wong, A.Y.4
Wang, H.5
Chen, C.6
-
34
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly B.T., Brodersen D.V., Clemons W.M., Morgan-Warren R.J., Carter A.P., Vonhrheln C., et al. Structure of the 30S ribosomal subunit. Nature 2000, 407:327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.V.2
Clemons, W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonhrheln, C.6
-
36
-
-
84893976081
-
A simple one-step PCR walking method and its application of bacterial rRNA for sequencing identification
-
Zhang H., You C., Ren J., Xu D., Han M., Liao W. A simple one-step PCR walking method and its application of bacterial rRNA for sequencing identification. Current Microbiology 2014, 68:486-494.
-
(2014)
Current Microbiology
, vol.68
, pp. 486-494
-
-
Zhang, H.1
You, C.2
Ren, J.3
Xu, D.4
Han, M.5
Liao, W.6
|