Chikungunya virus, epidemiology, clinics and phylogenesis: A review

Asian Pacific Journal of Tropical Medicine

Volumn 7, Issue 12, 2014, Pages 925-932

  Lo Presti, Alessandra ^a   Lai, Alessia ^b   Cella, Eleonora ^a   Zehender, Gianguglielmo ^b   Ciccozzi, Massimo ^a,c  

^a ISTITUTO SUPERIORE DI SANITÀ   (Italy)

^b UNIVERSITY OF MILAN   (Italy)

^c UNIVERSITY CAMPUS BIO MEDICO   (Italy)

Author keywords

CHIKV; Epidemiology; Phylogeny

Indexed keywords

AFRICA; ARTICLE; ASIA; CHIKUNGUNYA; CHIKUNGUNYA ALPHAVIRUS; CLADISTICS; EPIDEMIC; GENOTYPE; GEOGRAPHY; HUMAN; INDIAN OCEAN; LABORATORY DIAGNOSIS; NIGERIA; NONHUMAN; PHYLOGENY; SENEGAL; SENSITIVITY AND SPECIFICITY; VIRUS ISOLATION; VIRUS STRAIN;

EID: 84918841671     PISSN: 19957645     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1995-7645(14)60164-4     Document Type: Article

References (82)

1. Schuffenecker I, Iteman I, Michault A, Murri S, Frangeul L, Vaney MC, et al. Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak. PLoS Med 2006, 3:e263.
2. Deller JJ, Russell PK An analysis of fevers of unknown origin in American soldiers in Vietnam. Ann Intern Med 1967, 66:1129-1143.
3. McGill PE Viral infections: alpha-viral arthropathy. Baillieres Clin Rheumatol 1995, 9:145-150.
4. Adebajo AO Rheumatic manifestations of tropical diseases. Curr Opin Rheumatol 1996, 8:85-89.
5. Ligon BL Reemergence of an unusual disease: the chikungunya epidemic. Semin Pediatr Infect Dis 2006, 17:99-104.
6. Robinson MC An epidemic of virus disease in southern province, Tanganyika territory, in 1952-53. Trans R Soc Trop Med Hyg 1955, 49:28-32.
7. Higashi N, Matsumoto A, Tabata K, Nagatomo Y Electron microscope study of development of Chikungunya virus in green monkey kidney stable (VERO) cells. Virology 1967, 33(1):55-69.
8. Simizu B, Yamamoto K, Hashimoto K, Ogata T Structural proteins of Chikungunya virus. J Virol 1984, 51:254-258.
9. Powers AM, Brault AC, Shirako Y, Strauss EG, Kang W, Strauss JH, et al. Evolutionary relationships and systematics of the alphaviruses. J Virol 2001, 75(21):10118-10131.
10. Khan AH, Morita K, Parquet Md, Mdel C, Hasebe F, Mathenge EG, et al. Complete nucleotide sequence of chikungunya virus and evidence for an internal polyadenylation site. J Gen Virol 2002, 83(12):3075-3084.
11. Barrett ADT, Weaver SC Arboviruses: alphaviruses, flaviviruses and bunyaviruses. Medical microbiology 2002, 484-501. Churchill Livingstone, London. 16 edn. D. Greenwood, R.C.B. Slack, J.F. Peutherer (Eds.).
12. Brooks GF, Butel JS, Morse SA Human arboviral infections. Melnick and Adelberg's Medical microbiology 2004, 514-524. Mc Graw Hill, Singapore. 23rd edn. Jawetz (Ed.).
13. Diallo M, Thonnon J, Traore Lamizana M, Fontenille D Vectors of Chikungunya virus in Senegal: current data and transmission cycles. Am J Trop Med Hyg 1999, 60:281-286.
14. Vanlandingham DL, Hong C, Klingler K, Tsetsarkin K, McElroy KL, Powers AM, et al. Differential inactivities of o'nyong-nyong and Chikungunya virus isolates in Anopheles gambiae and Aedes aegypti mosquitoes. Am J Trop Med Hyg 2005, 72:616-621.
15. Volk SM, Chen R, Tsetsarkin KA, Adams AP, Garcia TI, Sall AA, et al. Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates. J Virol 2010, 84:6497-6504.
16. Yadav P, Gokhale MD, Barde PV, Singh DK, Mishra AC, Maurya DT Experimental transmission of Chikungunya virus by Anopheles stephensi mosquitoes. Acta Virol 2003, 47:45-47.
17. Talarmin F, Staïkowsky F, Schoenlaub P, Risbourg A, Nicolas X, Zagnoli A, et al. Skin and mucosal manifestations of chikungunya virus infection in adults in Reunion Island. Med Trop (Mars) 2007, 67:167-173.
18. Robin S, Ramful D, Zettor J, Benhamou L, Jaffar-Bandjee MC, Rivière JP, et al. Severe bullous skin lesions associated with Chikungunya virus infection in small infants. Eur J Pediatr 2010, 169:67-72.
19. Schwartz O, Albert ML Biology and pathogenesis of chikungunya virus. Nat Rev Microbiol 2010, 8:491-500.
20. Dupuis-Maguiraga L, Noret M, Brun S, Le Grand R, Gras G, Roques P Chikungunya disease: infection-associated markers from the acute to the chronic phase of arbovirus-induced arthralgia. PLoS Negl Trop Dis 2012, 6(3):e1446.
21. Morrison JG Chikungunya fever. Int J Dermatol 1979, 18:628-629.
22. Bodenmann P, Genton B Chikungunya: an epidemic in real time. Lancet 2006, 368:258.
23. Mourya DT, Mishra AC Chikungunya fever. Lancet 2006, 368:186-187.
24. Yazdani R, Kaushik VV Chikungunya fever. Rheumatology (Oxford) 2007, 46:1214-1215.
25. Lemant J, Boisson V, Winer A, Thibault L, André H, Tixier F, et al. Serious acute chikungunya virus infection requiring intensive care during the Reunion Island outbreak in 2005-2006. Crit Care Med 2008, 36(9):2536-2541.
26. Sissoko D, Malvy D, Ezzedine K, Renault P, Moscetti F, Ledrans M, et al. Post-epidemic chikungunya disease on Reunion Island: course of rheumatic manifestations and associated factors over a 15-month period. PLoS Negl Trop Dis 2009, 3:e389.
27. Manimunda SP, Vijayachari P, Uppoor R, Sugunan AP, Singh SS, Rai SK, et al. Clinical progression of chikungunya fever during acute and chronic arthritic stages and the changes in joint morphology as revealed by imaging. Trans R Soc Trop Med Hyg 2010, 104:392-399.
28. Borgherini G, Poubeau P, Jossaume A, Gouix A, Cotte L, Michault A, et al. Persistent arthralgia associated with Chikungunya virus: a study of 88 adult patients on Reunion Island. Clin Infect Dis 2008, 47:469-475.
29. Simon F, Parola P, Grandadam M, Fourcade S, Oliver M, Brouqui P, et al. Chikungunya infection: an emerging rheumatism among travelers returned from Indian Ocean islands. Report of 47 cases. Medicine (Baltimore) 2007, 86:123-137.
30. Mizuno Y, Kato Y, Takeshita N, Ujiie M, Kobayashi T, Kanagawa S, et al. Clinical and radiological features of imported chikungunya fever in Japan: a study of six cases at the National Center for Global Health and Medicine. J Infect Chemother 2011, 17(3):419-423.
31. Chhabra M, Mittal V, Bhattacharya D, Rana UVS, Lal S Chikungunya fever: A re-emerging viral infection. Indian J Med Microbiol 2008, 26(1):5-12.
32. Chikungunya Fever Fact Sheet - CDC Division of Vector Borne Infectious Diseases.[Online] [Accessed on 2006]. http://www.cdc.gov/ncidod/chikungunya/chickfact.htm.
33. Simon F, Javelle E, Oliver M, Leparc-Goffart I, Marimoutou C Chikungunya virus infection. Curr Infect Dis Rep 2011, 13:218-228.
34. Panning M, Hess M, Fischer W, Grywna K, Pfeffer M, Drosten C Performance of the RealStar Chikungunya virus real-time reverse transcription-PCR kit. J Clin Microbiol 2009, 47:3014-3016.
35. Parola P, de Lamballerie X, Jourdan X, Rovery C, Vaillant V, Minodier P, et al. Novel chikungunya virus variant in travelers returning from Indian Ocean islands. Emerg Infect Dis 2006, 12:1493-1499.
36. Niedrig M, Zeller H, Schuffenecker I, Drosten C, Emmerich P, Rumer L, et al. International diagnostic accuracy study for the serological detection of chikungunya virus infection. Clin Microbiol Infect 2009, 15:880-884.
37. Oliver M, Grandadam M, Marimoutou C, Rogier C, Botelho-Nevers E, Tolou H, et al. Persisting mixed cryoglobulinemia in Chikungunya infection. PLoS Negl Trop Dis 2009, 3:e374.
38. Jaffar-Bandjee MC, Das T, Hoarau JJ, Krejbich Trotot P, Denizot M, Ribera A, et al. Chikungunya virus takes centre stage in virally induced arthritis: possible cellular and molecular mechanisms to pathogenesis. Microbes Infect 2009, 11:1206-1218.
39. Carletti F, Bordi L, Chiappini R, Ippolito G, Sciarrone MR, Capobianchi MR, et al. Rapid detection and quantification of Chikungunya virus by a one-step reverse transcription polymerase chain reaction real-time assay. Am J Trop Med Hyg 2007, 77(3):521-524.
40. Chiam CW, Chan YF, Loong SK, Yong SS, Hooi PS, Sam IC Real-time polymerase chain reaction for diagnosis and quantitation of negative strand of chikungunya virus. Diagn Microbiol Infect Dis 2013, 77:133-137.
41. Agarwal A, Singh AK, Sharma S, Soni M, Thakur AK, Gopalan N, et al. Application of real-time RT-PCR in vector surveillance and assessment of replication kinetics of an emerging novel ECSA genotype of Chikungunya virus in Aedes aegypti. J Virol Methods 2013, 193:419-425.
42. Chen H, Takei F, Koay ES, Nakatani K, Chu JJ A novel DANP-coupled hairpin RT-PCR for rapid detection of Chikungunya virus. J Mol Diagn 2013, 15:227-233.
43. Lumbsden WHR An epidemic of virus disease in southern province of Tanganyika territory, in 1952-53; II General description and epidemiology. Trans R Soc Trop Med Hyg 1955, 49(1):33-55.
44. Ross RW The Newala epidemic III; the virus: isolation, pathogenic properties and relationship to the epidemic. J Hyg 1956, 54:177-191.
45. Lo Presti A, Ciccozzi M, Cella E, Lai A, Simonetti FR, Galli M, et al. Origin, evolution, and phylogeography of recent epidemic CHIKV strains. Infect Genet Evol 2012, 12(2):392-398.
46. Jupp PG, McIntosh BM Chikungunya disease. The arboviruses: epidemiology and ecology 1988, 137-157. CRC Press, Boca Raton (Florida). T.P. Monath (Ed.).
47. Lanciotti RS, Ludwig ML, Rwaguma EB, Lutwama JJ, Kram TM, Karabatsos N, et al. Emergence of epidemic O'nyong-nyong fever in Uganda after a 35-year absence: genetic characterization of the virus. Virology 1998, 252:258-268.
48. Williams MC, Woodall JP, Corbet PS, Gillett JD O'nyong-nyong fever: an epidemic virus disease in East Africa and virus isolations from Anopheles mosquitoes. Trans R Soc Trop Med Hyg 1965, 59:300-306.
49. Halstead SB, Scanlon JE, Umpaivit P, Udomsakdi S Dengue and Chikungunya virus infection in man in Thailand, 1962-1964, epidemiological study in Bangkok metropolitan area. Am J Trop Med Hyg 1969, 18:997-1021.
50. Padbidri VS, Gnaneswar TT Epidemiological investigations of chikungunya epidemic at Barsi, Maharashtra state, India. J Hyg Epidemiol Microbiol Immunol 1979, 23(4):445-451.
51. Pastorino B, Muyembe-Tamfum JJ, Bessaud M, Tock F, Tolou H, Durand JP, et al. Epidemic resurgence of Chikungunya virus in Democratic Republic of the Congo: identification of a new central African strain. J Med Virol 2004, 74:277-282.
52. WHO-Disease outbreak news 2006. Chikungunya and dengue in the southwest Indian Ocean, 17 March 2006.[Online]. Geneva [Accessed on May 01, 2006]. http://www.who.int/csr/don/2006_03_17/print.html.
53. Powers AM, Logue CH Changing patterns of chikungunya virus: re-emergence of a zoonotic arbovirus. J Gen Virol 2007, 88:2363-2377.
54. Mathew T, Tiruvengadam KV Further studies on the isolate of Chikungunya from the Indian repatriates of Burma. Indian J Med Res 1973, 61(4):517-520.
55. Laras K, Sukri NC, Larasati RP, Bangs MJ, Kosim R, Djauzi, et al. Tracking the re-emergence of epidemic chikungunya virus in Indonesia. Trans R Soc Trop Med Hyg 2005, 99:128-141.
56. Lam SK, Chua KB, Hooi PS Chikungunya infection: emerging disease in Malasiya. Southeast Asian J Trop Med Pub Hlth 2001, 32:447-451.
57. Shah KV, Gibbs CJ, Banerjee G Virological investigation of the epidemic of haemorrhagic fever in Calcutta: isolation of three strains of Chikungunya virus. Indian J Med Res 1964, 52:676-683.
58. Jadhav M, Namboodripad M, Carman RH, Carey DE, Myers RM Chikungunya disease in infants and children in Vellore: a report of clinical and haematological features of virologically proved cases. Indian J Med Res 1965, 53:764-776.
59. Thiruvengadam KV, Kalyanasundaram V, Rajgopal J Clinical and pathological studies on Chikungunya fever in Madras City. Indian J Med Res 1965, 53:729-744.
60. Lahariya C, Pradhan SK Emergence of chikungunya virus in Indian subcontinent after 32 years: A review. J Vector Borne Dis 2006, 43:151-160.
61. Pavri KM Presence of chikungunya antibodies in human sera collected from Calcutta and Jamshedpur before 1963. Indian J Med Res 1964, 52:698-702.
62. Sarkar JK, Chatterjee SN, Chakravarty SK, Mitra AC The causative agent of Calcutta haemorrhagic fever: chikungunya or dengue. Bull Calcutta Sch Trop Med 1965, 13:53-54.
63. Burke DS, Nisalak A, Nimmannitya S Disappearance of Chikungunya virus from Bangkok. Trans R Soc Trop Med Hyg 1985, 79:419-420.
64. Chastel C Chikungunya virus: its recent spread to the southern Indian Ocean and Reunion Island (2005-2006). Bull Acad Natl Med 2005, 189:1827-1835.
65. Paganin F, Borgherini G, Staikowsky F, Arvin-Berod C, Poubeau P Chikungunya on Reunion Island: chronicle of an epidemic foretold. Presse Med 2006, 35:641-646.
66. Pialoux G, Gaüzère BA, Jauréguiberry S, Strobel M Chikungunya, an epidemic arbovirosis. Lancet Infect Dis 2007, 7:319-327.
67. Rezza G, Nicoletti L, Angelini R, Romi R, Finarelli AC, Panning M, CHIKV study group, et al. Infection with chikungunya virus in Italy: an outbreak in a temperate region. Lancet 2007, 370:1840-1846.
68. Kumar NP, Joseph R, Kamaraj T, Jambulingam P A226V mutation in virus during the 2007 chikungunya outbreak in Kerala, India. J Gen Virol 2008, 89:1945-1948.
69. Moro ML, Gagliotti C, Silvi G, Angelini R, Sambri V, Rezza G, Chikungunya Study Group, et al. Chikungunya virus in North-Eastern Italy: a seroprevalence survey. Am J Trop Med Hyg 2010, 82:508-511.
70. Centers for Disease Control and Prevention (CDC) Chikungunya fever diagnosed among international travelers-United States, 2005-2006. MMWR Morb Mortal Wkly Rep 2006, 55:1040-1042.
71. Powers AM, Brault AC, Tesh RB, Weaver SC Re-emergence of Chikungunya and O'nyong-nyong viruses: evidence for distinct geographical lineages and istant evolutionary relationships. J Gen Virol 2000, 81:471-479.
72. Duong V, Andries AC, Ngan C, Sok T, Richner B, Asgari-Jirhandeh N, et al. Reemergence of Chikungunya virus in Cambodia. Emerg Infect Dis 2012, 18(12):2066-2069.
73. Arankalle VA, Shrivastava S, Cherian S, Gunjikar RS, Walimbe AM, Jadhav SM, et al. Genetic divergence of Chikungunya viruses in India (1963-2006) with special reference to the 2005-2006 explosive epidemic. J Gen Virol 2007, 88:1967-1976.
74. Brisse S, Iteman I, Schuffenecker I Chikungunya outbreaks. N Engl J Med 2007, 356:2650-2652.
75. Charrel RN, de Lamballerie X, Raoult D Chikungunya outbreaks the globalization of vectorborne diseases. N Engl J Med 2007, 356:769-771.
76. Tsetsarkin KA, Vanlandingham DL, McGee CE, Higgs S A single mutation in chikungunya virus affects vector specificity and epidemic potential. PLoS Pathog 2007, 3:e201.
77. Cherian SS, Walimbe AM, Jadhav SM, Gandhe SS, Hundekar SL, Mishra AC, et al. Evolutionary rates and timescale comparison of Chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005-07 outbreak in the Indian subcontinent. Infect Genet Evol 2009, 9:16-23.
78. Yergolkar PN, Tandale BV, Arankalle VA, Sathe PS, Sudeep AB, Gandhe SS, et al. Chikungunya outbreaks caused by African genotype. Indian Emerg Infect Dis 2006, 12:1580-1583.
79. Chevillon C, Briant L, Renaud F, Devaux C The chikungunya threat: an ecological and evolutionary perspective. Trends Microbiol 2008, 16:80-88.
80. Ng LC, Hapuarachchi HC Tracing the path of chikungunya virus-evolution and adaptation. Infect Genet Evol 2010, 10:876-885.
81. Delatte H, Bagny L, Brengue C, Bouetard A, Paupy C, Fontenille D The invaders: phylogeography of dengue and chikungunya viruses Aedes vectors, on the South West islands of the Indian Ocean. Infect Genet Evol 2011, 11:1769-1781.
82. Carey DE Chikungunya and dengue: a case of mistaken identity?. J Hist Med Allied Sci 1971, 26(3):243-262.