Metabolic and genetic diversity of mesophilic and thermophilic bacteria isolated from composted municipal sludge on poly-ε-caprolactones

Current Microbiology

Volumn 49, Issue 6, 2004, Pages 407-414

  Tiago, Igor ^a   Teixeira, Isabel ^b   Silva, Sílvia ^b   Chung, Paula ^a   Veríssimo, António ^a   Manaia, Célia M ^b  

^a UNIVERSITY OF COIMBRA   (Portugal)

^b UNIVERSIDADE CATÓLICA PORTUGUESA   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; DNA; ENZYME; POLYCAPROLACTONE; POLYMER; CAPROLACTONE; HEXANOIC ACID DERIVATIVE; LACTONE;

ACTINOBACTERIA; ARTICLE; BACILLUS; BURKHOLDERIA; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONAS; SLUDGE; STAPHYLOCOCCUS; TEMPERATURE MEASUREMENT; THERMOPHILIC BACTERIUM; CARBOHYDRATE METABOLISM; CLASSIFICATION; GENETICS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; GROWTH, DEVELOPMENT AND AGING; HEAT; METABOLISM; MICROBIOLOGY; PHENOTYPE; RANDOM AMPLIFIED POLYMORPHIC DNA; SEWAGE;

ACINETOBACTER; BURKHOLDERIA; PSEUDOMONAS; STAPHYLOCOCCUS;

CARBOHYDRATE METABOLISM; GENOTYPE; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; HEAT; HEXANOIC ACIDS; LACTONES; PHENOTYPE; PHYLOGENY; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SEWAGE; VARIATION (GENETICS); WASTE DISPOSAL, FLUID;

EID: 14044280078     PISSN: 03438651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00284-004-4353-0     Document Type: Article

References (33)

1. T Beffa M Blanc P-F Lyon G Vogt M Marchiani JL Fischer 1996 Isolation of Thermus strains from hot composts (60°C to 80°C) Appl Environ Microbiol 62 1723 1727
2. EL Carr P Kämpfer BKC Patel V Gürtler RJ Seviour 2003 Seven novel species of Acinetobacter isolated from activated sludge Int J Syst Evol Microbiol 53 953 963
3. De Clerck E, Rodríguez-Díaz M, Vanhoutte T, Heyrman J, Logan NA, Vos De P (2004) Anoxybacillus contaminans sp. nov. and Bacillus gelatini sp. nov., isolated from contaminated gelatin batches. Int J Syst Bacteriol (in press)
4. RN Doetsch 1981 Determinative methods of light microscopy P Gerhardt Manual of methods of general bacteriology American Society for Microbiology Washington, DC 21 23
5. J Felsenstein 1993 PHYLIP (phylogenetic inference package), version 3.5.1 Department of Genetics, University of Washington Seattle
6. SH Gordon SH Imam RV Greene 1996 Starch-based plastics (measurement of biodegradability) JC Salamone Polymeric materials encyclopedia, vol 10 CRC Press Boca Raton, FL 7885 7891
7. TA Hall 1999 BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT Nucleic Acids Symp Ser 41 95 98
8. KE Jaeger A Steinbuchel D Jendrossek 1995 Substrate specificities of bacterial polyhydroxyalkanoate depolymerases and lipases: Bacterial lipases hydrolyze poly(omega-hydroxyalkanoates) Appl Envir Microbiol 61 3113 3118
9. TH Jukes CR Cantor 1969 Evolution of protein molecules HN Munro Mammalian protein metabolism Academic Press New York 21 132
10. I Kleeberg C Hetz RM Kroppenstedt R-J Müller W-D Deckwer 1998 Biodegradation of aliphatic-aromatic copolyesters by Thermomonospora fusca and other thermophilic compost isolates Appl Environ Microbiol 64 1731 1735
11. S Kumar K Tamura IB Jakobsen M Nei 2001 MEGA2: Molecular evolutionary genetics analysis software Bioinformatics 17 1244 1245
12. TM LaPara CH Nakatsu L Pantea JE Alleman 2000 Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater Appl Environ Microbiol 66 3951 3959
13. BL Maidak JR Cole TG Lilburn CT Parker Jr PR Saxman R Farris 2001 The RDP-II (Ribosomal Database Project) Nucleic Acids Res 29 173 174
14. CM Manaia ERB Moore 2002 Pseudomonas thermotolerans sp. nov., a thermotolerant species of Pseudomonas Int J Syst Evol Microbiol 52 2203 2209
15. CM Manaia OC Nunes B Nogales 2003 Caenibacterium thermophilum gen. nov., sp. nov., isolated from a thermophilic aerobic digester of municipal sludge Int J Syst Evol Microbiol 53 1375 1382
16. CM Manaia B Nogales OC Nunes 2003 Tepidiphilus margaritifer gen. nov., sp. nov., isolated from a thermophilic aerobic digester Int J Syst Evol Microbiol 53 1405 1410
17. L Mergaert J Swings 1996 Biodiversity of microorganisms that degrade bacterial and synthetic polyesters J Ind Microbiol 17 463 469
18. R Müller G Antranikian S Maloney R Sharp 1998 Thermophilic degradation of environmental pollutants Adv Biochem Eng Biotechnol 61 155 169
19. S Peters S Koschinsky F Shwieger CC Tebbe 2000 Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes Appl Environ Microbiol 66 930 936
20. C Polprasert 1996 Organic waste recycling: Technology and management 2 Wiley Chichester
21. C Ponti B Sonnleitner A Fiechter 1995 Aerobic thermophilic treatment of sewage sludge at pilot plant scale. 2. Technical solutions and process design J Biotechnol 38 185 192
22. H Pranamuda Y Tokiwa H Tanaka 1995 Microbial degradation of an aliphatic polyester with a high melting point, poly(tetramethylene succinate) Appl Environ Microbiol 61 1828 1832
23. FA Rainey N Ward-Rainey RM Kroppenstedt E Stackebrand 1996 The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: Proposal of Nocardiopsaceae fam nov. Int J Syst Bacteriol 46 1088- 1092
24. P Santos I Pinhal FA Rainey N Empadinhas J Costa B Fields 2003 Gamma-Proteobacteria Aquicella lusitana gen. nov., sp. nov., and Aquicella siphonis sp. nov. infect protozoa and require activated charcoal for growth in laboratory media Appl Environ Microbiol 69 6533 6540
25. F Shooner RD Tyagi 1995 Microbial ecology of simultaneous thermophilic microbial leaching and digestion of sewage sludge Can J Microbiol 41 1071 1080
26. RM Smibert NR Krieg 1981 General characterization P Gerhardt Manual of methods for general bacteriology American Society for Microbiology Washington, DC 409 443
27. J Snaidr R Amann I Huber W Ludwig KH Schleifer 1997 Phylogenetic analysis and in situ identification of bacteria in activated sludge Appl Environ Microbiol 63 2884 2896
28. PF Strom 1985 Identification of thermophilic bacteria in solid-waste composting Appl Environ Microbiol 50 906 913
29. T Suyama Y Tokiwa 1997 Enzymatic degradation of an aliphatic polycarbonate, poly(tetramethylene carbonate) Enzyme Microbial Technol 20 122 126
30. T Suyama Y Tokiwa P Ouichanpagdee T Kanagawa Y Kamagata 1998 Phylogenetic affiliation of soil bacteria that degrade aliphatic polyesters available commercially as biodegradable plastics Appl Environ Microbiol 64 5008 5011
31. JD Thompson JT Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 24 4876 4882
32. J van Heerden MM Ehlers TE Cloete 2001 Biolog for the determination of microbial diversity in activated sludge systems Water Sci Technol 43 83 90
33. M Wiedmann-al-Ahmad HV Tichy G Schon 1994 Characterization of Acinetobacter type strains and isolates obtained from wastewater treatment plants by PCR fingerprinting Appl Environ Microbiol 60 4066 4071