메뉴 건너뛰기




Volumn 80, Issue 24, 2014, Pages 7659-7666

A hidden pitfall in the preparation of agar media undermines microorganism cultivability

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL ANALYSIS; MICROORGANISMS; PLATES (STRUCTURAL COMPONENTS); POLYSACCHARIDES;

EID: 84917709090     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02741-14     Document Type: Article
Times cited : (177)

References (48)
  • 1
    • 0021779934 scopus 로고
    • Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
    • Staley JT, Konopka A. 1985. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu. Rev. Microbiol. 39:321-346. http://dx.doi.org/10.1146/annurev.mi.39.100185.001541.
    • (1985) Annu. Rev. Microbiol. , vol.39 , pp. 321-346
    • Staley, J.T.1    Konopka, A.2
  • 2
    • 84866332775 scopus 로고    scopus 로고
    • Growing unculturable bacteria
    • Stewart EJ. 2012. Growing unculturable bacteria. J. Bacteriol. 194:4151-4160. http://dx.doi.org/10.1128/JB.00345-12.
    • (2012) J. Bacteriol. , vol.194 , pp. 4151-4160
    • Stewart, E.J.1
  • 5
    • 0032540905 scopus 로고    scopus 로고
    • A sequencing method based on real-time pyrophosphate
    • Ronaghi M, Uhlén M, Nyrén P. 1998. A sequencing method based on real-time pyrophosphate. Science 281:363-365. http://dx.doi.org/10.1126/science.281.5375.363.
    • (1998) Science , vol.281 , pp. 363-365
    • Ronaghi, M.1    Uhlén, M.2    Nyrén, P.3
  • 9
    • 0037052320 scopus 로고    scopus 로고
    • Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment
    • Kaeberlein T, Lewis K, Epstein SS. 2002. Isolating "uncultivable" microorganisms in pure culture in a simulated natural environment. Science 296:1127-1129. http://dx.doi.org/10.1126/science.1070633.
    • (2002) Science , vol.296 , pp. 1127-1129
    • Kaeberlein, T.1    Lewis, K.2    Epstein, S.S.3
  • 10
    • 50249237865 scopus 로고    scopus 로고
    • Cultivating previously uncultured soil bacteria using a soil substrate membrane system
    • Ferrari BC, Winsley T, Gillings M, Binnerup S. 2008. Cultivating previously uncultured soil bacteria using a soil substrate membrane system. Nat. Protoc. 3:1261-1269. http://dx.doi.org/10.1038/nprot.2008.102.
    • (2008) Nat. Protoc. , vol.3 , pp. 1261-1269
    • Ferrari, B.C.1    Winsley, T.2    Gillings, M.3    Binnerup, S.4
  • 12
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon SA, Giovannoni SJ. 2002. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:3878-3885. http://dx.doi.org/10.1128/AEM.68.8.3878-3885.2002.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 13
    • 0036250036 scopus 로고    scopus 로고
    • Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia
    • Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M. 2002. Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia. Appl. Environ. Microbiol. 68:2391-2396. http://dx.doi.org/10.1128/AEM.68.5.2391-2396.2002.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 2391-2396
    • Janssen, P.H.1    Yates, P.S.2    Grinton, B.E.3    Taylor, P.M.4    Sait, M.5
  • 16
    • 0018713684 scopus 로고
    • Catalase activity during the recovery of heat-stressed Staphylococcus aureus MF-31
    • Andrews GP, Martin SE. 1979. Catalase activity during the recovery of heat-stressed Staphylococcus aureus MF-31. Appl. Environ. Microbiol. 38:390-394.
    • (1979) Appl. Environ. Microbiol. , vol.38 , pp. 390-394
    • Andrews, G.P.1    Martin, S.E.2
  • 17
    • 0023554040 scopus 로고
    • Action of hypochlorous acid on the antioxidant protective enzymes superoxide dismutase, catalase and glutathione peroxidase
    • Aruoma OI, Halliwell B. 1987. Action of hypochlorous acid on the antioxidant protective enzymes superoxide dismutase, catalase and glutathione peroxidase. Biochem. J. 248:973-976.
    • (1987) Biochem. J. , vol.248 , pp. 973-976
    • Aruoma, O.I.1    Halliwell, B.2
  • 18
    • 0033811333 scopus 로고    scopus 로고
    • Recovery of hydrogen peroxide-sensitive culturable cells of Vibrio vulnificus gives the appearance of resuscitation from a viable but nonculturable state
    • Bogosian G, Aardema ND, Bourneuf EV, Morris PJL, O'Neil JP. 2000. Recovery of hydrogen peroxide-sensitive culturable cells of Vibrio vulnificus gives the appearance of resuscitation from a viable but nonculturable state. J. Bacteriol. 182:5070-5075. http://dx.doi.org/10.1128/JB.182.18.5070-5075.2000.
    • (2000) J. Bacteriol. , vol.182 , pp. 5070-5075
    • Bogosian, G.1    Aardema, N.D.2    Bourneuf, E.V.3    Morris, P.J.L.4    O'Neil, J.P.5
  • 19
    • 0025095812 scopus 로고
    • Improved membrane filtration method incorporating catalase and sodium pyruvate for detection of chlorine stressed coliform bacteria Appl
    • Calabrese JP, Bissonnette GK. 1990. Improved membrane filtration method incorporating catalase and sodium pyruvate for detection of chlorine stressed coliform bacteria Appl. Environ. Microbiol. 56:3558-3564.
    • (1990) Environ. Microbiol. , vol.56 , pp. 3558-3564
    • Calabrese, J.P.1    Bissonnette, G.K.2
  • 22
    • 77951659466 scopus 로고    scopus 로고
    • Improving the culturability of freshwater bacteria using FW70, a low-nutrient solid medium amended with sodium pyruvate
    • Imazaki I, Kobori Y. 2010. Improving the culturability of freshwater bacteria using FW70, a low-nutrient solid medium amended with sodium pyruvate. Can. J. Microbiol. 56:333-341. http://dx.doi.org/10.1139/W10-019.
    • (2010) Can. J. Microbiol. , vol.56 , pp. 333-341
    • Imazaki, I.1    Kobori, Y.2
  • 23
    • 0040336368 scopus 로고
    • A bacteriotoxic substance in autoclaved culture media containing glucose and phosphate
    • Finkelstein RA, Lankford CE. 1957. A bacteriotoxic substance in autoclaved culture media containing glucose and phosphate. Appl. Microbiol. 5:74-79.
    • (1957) Appl. Microbiol. , vol.5 , pp. 74-79
    • Finkelstein, R.A.1    Lankford, C.E.2
  • 24
    • 84908004989 scopus 로고
    • Stimulation of growth initiation by heat degradation products of glucose
    • Ramsey HH, Lankford CE. 1956. Stimulation of growth initiation by heat degradation products of glucose. J. Bacteriol. 72:511-518.
    • (1956) J. Bacteriol. , vol.72 , pp. 511-518
    • Ramsey, H.H.1    Lankford, C.E.2
  • 25
    • 0000604255 scopus 로고
    • Inhibition of bacterial growth by Maillard reaction products
    • Einarsson H, Snygg BG, Eriksson C. 1983. Inhibition of bacterial growth by Maillard reaction products. J. Agric. Food Chem. 31:1043-1047. http://dx.doi.org/10.1021/jf00119a031.
    • (1983) J. Agric. Food Chem. , vol.31 , pp. 1043-1047
    • Einarsson, H.1    Snygg, B.G.2    Eriksson, C.3
  • 26
    • 84864411424 scopus 로고    scopus 로고
    • Trace amounts of furan-2-carboxylic acids determine the quality of solid agar plates for bacterial culture
    • Hara S, Isoda R, Tahvanainen T, Hashidoko Y. 2012. Trace amounts of furan-2-carboxylic acids determine the quality of solid agar plates for bacterial culture. PLoS One 7:e41142. http://dx.doi.org/10.1371/journal.pone.0041142.
    • (2012) PLoS One , vol.7
    • Hara, S.1    Isoda, R.2    Tahvanainen, T.3    Hashidoko, Y.4
  • 27
    • 0042812120 scopus 로고    scopus 로고
    • Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov
    • Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K. 2003. Gemmatimonas aurantiaca gen. nov., sp. nov., a Gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov. Int. J. Syst. Evol. Microbiol. 53:1155-1163. http://dx.doi.org/10.1099/ijs.0.02520-0.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1155-1163
    • Zhang, H.1    Sekiguchi, Y.2    Hanada, S.3    Hugenholtz, P.4    Kim, H.5    Kamagata, Y.6    Nakamura, K.7
  • 28
    • 67649967231 scopus 로고    scopus 로고
    • Effect of gelling agent on colony formation in solid cultivation of microbial community in lake sediment
    • Tamaki H, Hanada S, Sekiguchi Y, Tanaka Y, Kamagata Y. 2009. Effect of gelling agent on colony formation in solid cultivation of microbial community in lake sediment. Environ. Microbiol. 11:1827-1834. http://dx.doi.org/10.1111/j.1462-2920.2009.01907.x.
    • (2009) Environ. Microbiol. , vol.11 , pp. 1827-1834
    • Tamaki, H.1    Hanada, S.2    Sekiguchi, Y.3    Tanaka, Y.4    Kamagata, Y.5
  • 29
    • 0025293777 scopus 로고
    • Hydrogen peroxide production during experimental protein glycation
    • Jiang ZY, Woollard ACS, WolffSP. 1990. Hydrogen peroxide production during experimental protein glycation. FEBS Lett. 268:69-71. http://dx.doi.org/10.1016/0014-5793(90)80974-N.
    • (1990) FEBS Lett. , vol.268 , pp. 69-71
    • Jiang, Z.Y.1    Woollard, A.C.S.2    Wolff, S.P.3
  • 31
    • 0017918129 scopus 로고
    • Inductively coupled plasma-atomic emission spectrometry: analysis of biological materials and soils for major, trace, and ultra-trace elements
    • Dahlquist RL, Knoll JW. 1978. Inductively coupled plasma-atomic emission spectrometry: analysis of biological materials and soils for major, trace, and ultra-trace elements. Appl. Spectrosc. 32:1-30. http://dx.doi.org/10.1366/000370278774331828.
    • (1978) Appl. Spectrosc. , vol.32 , pp. 1-30
    • Dahlquist, R.L.1    Knoll, J.W.2
  • 32
    • 0000615869 scopus 로고
    • Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies
    • Fuhrman JA, Comeau DE, Hagström Å, Chan AM. 1988. Extraction from natural planktonic microorganisms of DNA suitable for molecular biological studies. Appl. Environ. Microbiol. 54:1426-1429.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 1426-1429
    • Fuhrman, J.A.1    Comeau, D.E.2    Hagström, Å3    Chan, A.M.4
  • 33
    • 0033057111 scopus 로고    scopus 로고
    • Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints
    • Heuer H, Hartung K, Wieland G, Kramer I, Smalla K. 1999. Polynucleotide probes that target a hypervariable region of 16S rRNA genes to identify bacterial isolates corresponding to bands of community fingerprints. Appl. Environ. Microbiol. 65:1045-1049.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1045-1049
    • Heuer, H.1    Hartung, K.2    Wieland, G.3    Kramer, I.4    Smalla, K.5
  • 34
    • 84856186358 scopus 로고    scopus 로고
    • DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences
    • Wright ES, Yilmaz LS, Noguera DR. 2012. DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences. Appl. Environ. Microbiol. 78:717-725. http://dx.doi.org/10.1128/AEM.06516-11.
    • (2012) Appl. Environ. Microbiol. , vol.78 , pp. 717-725
    • Wright, E.S.1    Yilmaz, L.S.2    Noguera, D.R.3
  • 35
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. 2007. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73:5261-5267. http://dx.doi.org/10.1128/AEM.00062-07.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 37
    • 77956304094 scopus 로고    scopus 로고
    • Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions
    • Reeder J, Knight R. 2010. Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions. Nat. Methods 7:668-669. http://dx.doi.org/10.1038/nmeth0910-668b.
    • (2010) Nat. Methods , vol.7 , pp. 668-669
    • Reeder, J.1    Knight, R.2
  • 38
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar RC. 2010. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460-2461. http://dx.doi.org/10.1093/bioinformatics/btq461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 43
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R. 2005. UniFrac: a new phylogenetic method for comparing microbial communities. Appl. Environ. Microbiol. 71:8228-8235. http://dx.doi.org/10.1128/AEM.71.12.8228-8235.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 44
    • 0017081993 scopus 로고
    • Patchiness in the distribution of planktonic heterotrophic bacteria in lakes
    • Palmer FE, Methot RD, Staley JT. 1976. Patchiness in the distribution of planktonic heterotrophic bacteria in lakes. Appl. Environ. Microbiol. 31:1003-1005.
    • (1976) Appl. Environ. Microbiol. , vol.31 , pp. 1003-1005
    • Palmer, F.E.1    Methot, R.D.2    Staley, J.T.3
  • 46
    • 17444372781 scopus 로고    scopus 로고
    • Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques
    • Tamaki H, Sekiguchi Y, Hanada S, Nakamura K, Nomura N, Matsumura M, Kamagata Y. 2005. Comparative analysis of bacterial diversity in freshwater sediment of a shallow eutrophic lake by molecular and improved cultivation-based techniques. Appl. Environ. Microbiol. 71:2162-2169. http://dx.doi.org/10.1128/AEM.71.4.2162-2169.2005.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 2162-2169
    • Tamaki, H.1    Sekiguchi, Y.2    Hanada, S.3    Nakamura, K.4    Nomura, N.5    Matsumura, M.6    Kamagata, Y.7
  • 48
    • 34247364679 scopus 로고    scopus 로고
    • Recovery of Flavobacterium psychrophilum viable cells using a charcoal-based solid medium
    • Alvarez B, Guijarro JA. 2007. Recovery of Flavobacterium psychrophilum viable cells using a charcoal-based solid medium. Lett. Appl. Microbiol. 44:569-572. http://dx.doi.org/10.1111/j.1472-765X.2007.02126.x.
    • (2007) Lett. Appl. Microbiol. , vol.44 , pp. 569-572
    • Alvarez, B.1    Guijarro, J.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.