Mageeibacillus indolicus gen. nov., sp. nov.: A novel bacterium isolated from the female genital tract

Anaerobe

Volumn 32, Issue , 2015, Pages 37-42

  Austin, Michele N ^a   Rabe, Lorna K ^a   Srinivasan, Sujatha ^b   Fredricks, David N ^b   Wiesenfeld, Harold C ^a,c   Hillier, Sharon L ^a,c  

^a UNIVERSITY OF PITTSBURGH   (United States)

^b Fred Hutchinson Cancer Research Center   (United States)

^c UNIVERSITY OF PITTSBURGH SCHOOL OF MEDICINE   (United States)

Author keywords

Bacterial vaginosis associated bacterium 3; Genital tract; Mageeibacillus indolicus gen. nov., sp. nov.; Taxonomy

Indexed keywords

CATALASE; CEFOXITIN; CLINDAMYCIN; COLISTIN; INDOLE; METRONIDAZOLE; OXIDOREDUCTASE; RNA 16S; UREASE; VANCOMYCIN; BACTERIAL DNA;

ANAEROBIC BACTERIUM; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL CELL WALL; BACTERIUM DETECTION; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CELL STRUCTURE; DNA BASE COMPOSITION; FAMILIA; FATTY ACID ANALYSIS; FEMALE; FEMALE GENITAL SYSTEM; GENE CLUSTER; GENE SEQUENCE; GENOTYPE PHENOTYPE CORRELATION; GENUS; GRAM POSITIVE BACTERIUM; HUMAN; LIPID COMPOSITION; MAGEEIBACILLUS INDOLICUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; RUMINOCOCCACEAE; SACCHAROFERMENTANS ACETIGENES; SEQUENCE ANALYSIS; CLASSIFICATION; DRUG EFFECTS; FIRMICUTES; GENETICS; GRAM POSITIVE INFECTION; GYNECOLOGIC DISEASE; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; VAGINITIS;

BACTERIA (MICROORGANISMS); CLOSTRIDIALES; CLOSTRIDIUM; POSIBACTERIA;

DNA, BACTERIAL; FEMALE; FIRMICUTES; GENITAL DISEASES, FEMALE; GENITALIA, FEMALE; GRAM-POSITIVE BACTERIAL INFECTIONS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; VAGINOSIS, BACTERIAL;

EID: 84916613668     PISSN: 10759964     EISSN: 10958274     Source Type: Journal    
DOI: 10.1016/j.anaerobe.2014.12.003     Document Type: Article

References (40)

1. Cohen C.R., Lingappa J.R., Baeten J.M., Ngayo M.O., Spiegel C.A., Hong T., et al. Bacterial vaginosis associated with increased risk of female-to-male HIV-1 transmission: a prospective cohort analysis among African couples. PLoS Med. 2012, 9(6):e1001251. 10.1371/journal.pmed.1001251.
2. Atashili J., Poole C., Ndumbe P.M., Adimora A.A., Smith J.S. Bacterial vaginosis and HIV acquisition: a meta-analysis of published studies. AIDS 2008, 22(12):1493-1501. 10.1097/QAD.0b013e3283021a37.
3. Cherpes T.L., Meyn L.A., Krohn M.A., Hillier S.L. Risk factors for infection with herpes simplex virus type 2. Sex. Transm. Dis. 2003, 30(5):405-410.
4. Bradshaw C.S., Morton A.N., Hocking J., Garland S.M., Morris M.B., Moss L.M., et al. High recurrence rates of bacterial vaginosis over the course of 12 months after oral metronidazole therapy. J.Infect. Dis. 2006, 193:1478-1486.
5. Fredricks D.N., Fiedler T.L., Marrazzo J.M. Molecular identification of bacteria associated with bacterial vaginosis. N.Engl. J. Med. 2005, 353:1899-1911. 10.1056/nejMoa043802.
6. Fredricks D.N., Fiedler T.L., Thomas K.K., Oakley B.B., Marazzo J.M. Targeted PCR for detection of vaginal bacteria associated with bacterial vaginosis. J.Clin. Microbiol. 2007, 45(10):3270-3276. 10.1128/jcm.01272-07.
7. Fredricks D.N., Fiedler T.L., Thomas K.K., Mitchell C.M., Marazzo J.M. Changes in vaginal bacterial concentrations with intravaginal metronidazole therapy for bacterial vaginosis as assessed by quantitative PCR. J.Clin. Microbiol. 2009, 47(3):721-726. 10.1128/jcm.01384-08.
8. Zhou X., Brown C.J., Abdo Z., Davis C.C., Hansmann M.A., Joyce P., et al. Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women. Int. Soc. Microb. Ecol. 2007, 1(2):121-133. 10.1038/ismej.2007.12.
9. Halebian S., Harris B., Finegold S.M., Rolfe R.D. Rapid method that aids in distinguishing Gram positive from Gram negative anaerobic bacteria. J.Clin. Microbiol. 1981, 13(3):444-448.
10. Summanen P., Baron E., Citron D.M., Strong C.A., Wexler H.M., Finegold S.M. Wadsworth Anaerobic Bacteriology Manual 1993, Veterans Administration Wadsworth Medical Center, and Departments of Medicine, and Microbiology and Immunology, UCLA School of Medicine, Belmont, CA. fifth ed.
11. Kasana R.C., Salwan R., Dhar H., Dutt S., Gulati A. Arapid and easy method for the detection of microbial cellulases on agar plates using Gram's iodine. Curr. Microbiol. 2008, 57:503-507. 10.1007/s00284-008-9276-8.
12. Johnson E.A., Summanen P., Finegold S.M. Clostridium. Manual of Clinical Microbiology 2007, 889-910. ASM Press, Washington D.C. ninth ed. P.R. Murray (Ed.).
13. Clinical Laboratory Standards Institute Methods for Antimicrobial Susceptibility Testing of Anaerobic Bacteria; Approved Standard 2001, CLSI document M11-A5, Clinical Laboratory Standards Institute, Wayne PA. fifth ed.
14. Sasser M. Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids 1990, (technical note no. 101), Microbial ID Inc, Newark, DE. http://www.microbialid.com/pages/publications_fa.html.
15. Tamura K., Dudley J., Nei M., Kumar S. Mega4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24(8):1596-1599. 10.1093/molbev/msm092.
16. Antonio M.A., Hawes S.E., Hillier S.L. The identification of vaginal Lactobacillus species and the demographic and microbiologic characteristics of women colonized by these species. J.Infect. Dis. 1999, 180:1950-1956. 10.1086/315109.
17. Frank J.A., Reich C.I., Sharma S., Weisbaum J.S., Wilson B.A., Olsen G.J. Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl. Environ. Microbiol. 2008, 4:2461-2470. 10.1128/AEM.02272-07.
18. Löffler F.E., Sun Q., Li J., Tiedje J.M. 16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Appl. Environ. Microbiol. 2008, 66:1369-1374.
19. Loy A., Maixner F., Wagner M., Horn M. probeBase - an online resource for rRNA targeted oligonucleotide probes: new features 2007. Nucleic Acids Res. 2007, 35(Database issue):D800-D804. 10.1093/nar/gk1856.
20. Chun J., Lee L.H., Jung Y., Kim M., Kim B.K., Lim Y.W. EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 2007, 57(10):2259-2261. 10.1099/ijs.0.64915.0.
21. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. Mega6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 2013, 30(12):2725-2729. 10.1093/molbev/mst197.
22. Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4(4):406-425.
23. Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, 21-132. Academic Press, New York. N.H. Munro (Ed.).
24. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
25. Chen S., Niu L., Zhang Y. Saccharofermentans acetigenes gen. nov., sp. nov., an anaerobic bacterium isolated from sludge treating brewery wastewater. Int. J. Syst. Evol. Microbiol. 2010, 60:2735-2738. 10.1099/ijs.0.017590-0.
26. Falsen E., Collins M.D., Welinder-Olsson C., Song Y., Finegold S.M., Lawson P.A. Fastidiosipila sanguinis gen. nov., sp. nov., a new Gram positive, coccus-shaped organism from human blood. Int. J. Syst. Evol. Microbiol. 2005, 55:853-858. 10.1099/ijs0.63327-0.
27. E.R.B. Moore, Culture Collection University of Goteborg, 5/17/2006. (Web. accessed 29.10.14.). http://www.ccug.se/default.cfm?page=search_record.cfm%26;ccugno=47711.
28. Shiratori H., Sasaya K., Ohiwa H., Ikeno H., Ayame S., Kataoka N., et al. Clostridium clariflavum sp. nov. and Clostridium caenicola sp. nov., moderately thermophilic, cellulose-/cellobiose-digesting bacteria isolated from methanogenic sludge. Int. J. Syst. Evol. Microbiol. 2009, 59:1764-1770. 10.1099/ijs0.003483-0.
29. Nishiyama T., Ueki A., Kaku N., Ueki K. Clostridium sufflavum sp. nov., isolated from a methanogenic reactor treating cattle waste. Int. J. Syst. Evol. Microbiol. 2009, 59:981-986. 10.1099/ijs0.001719-0.
30. Carlier J.P., Bedora-Faure M., K'ouas G., Alauzet C., Mory F. Proposal to unify Clostridium orbiscindens Winter etal. 1991 and Eubacterium plautii (Seguin 1928) Hofstad and Aasjord 1982, with description of Flavonifractor plautii gen. nov., comb. nov., and reassignment of Bacteroides capillosus to Pseudoflavonifractor capillosus gen. nov., comb. nov. Int. J. Syst. Evol. Microbiol. 2010, 60:585-590. 10.1099/ijs.0.016725-0.
31. Ezaki T. Genus I. Ruminococcus Sijpesteijn 1948, 152AL (Effective publication: Hungate 1957, 307AL). Bergey's Manual of Systematic Bacteriology 2009, vol. 3:1016-1017. Springer, New York. second ed.
32. Ifkovits R.W., Ragheb H.S. Cellular fatty acid composition and identification of rumen bacteria. Appl. Microbiol. 1968, 16(9):1406-1413.
33. Centers for Disease Control Sexually transmitted diseases treatment guidelines. Morb. Mortal. Wkly. Rep. 2010, 59:64-66.
34. Grice E.A., Kong H.H., Conlan S., Deming C.B., Davis J., Young M.A., et al. Topographical and temporal diversity of the skin microbiome. Science 2009, 324:1190-1192. 10.1123/science.1171700.
35. Collins M.D., Lawson P.A., Willems A., Cordoba J.J., Fernandez-Garayzabal J., Garcia P., et al. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int. J. Syst. Bacteriol. 1994, 44:812-826. 10.1099/00207713-44-4-812.
36. Rainey F.A. Family VIII: Ruminococcaceae fam. nov. Bergey's Manual of Systematic Bacteriology 2009, vol. 3:1016-1018. Springer, New York. second ed.
37. Fethers K., Twin J., Fairley C.K., Fowkes F.J.I., Garland S.M., Fehler G., et al. Bacterial vaginosis (BV) candidate bacteria: Associations with BV and behavioural practices in sexually-experienced and inexperienced women. PLoS One 2012, 7(2):e30633. 10.1371/journal.pone.0030633.
38. Marrazzo J.M., Fiedler T.L., Srinivasan S., Thomas K.K., Liu C., Ko D., et al. Extravaginal reservoirs of vaginal bacteria as risk factors for incident bacterial vaginosis. J.Infect. Dis. 2012, 205:1580-1588. 10.1093/infdis/jis242.
39. Foxman B., Wen A., Srinivasan U., Goldberg D., Marrs C.F., Owen J., et al. Mycoplasma, bacterial vaginosis-associated bacteria BVAB3, race, and risk of preterm birth in a high-risk cohort. Am. J. Obstet. Gynecol. 2014, 210(226):e1-7. 10.1016/j.ajog.2013.10.003.
40. Mitchell C., Balkus J.E., Fredricks D., Liu C., McKernan-Mullin J., Frenkel L.M., et al. Interaction between lactobacilli, bacterial vaginosis-associated bacteria, and HIV type 1 RNA and DNA genital shedding in U.S. and Kenyan women. AIDS Res. Hum. Retrovir. 2013, 29(1):13-19. 10.1089/aid.2012.0187.