Clostridium sufflavum sp. nov., isolated from a methanogenic reactor treating cattle waste

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 5, 2009, Pages 981-986

  Nishiyama, Tomomi ^a   Ueki, Atsuko ^a   Kaku, Nobuo ^a   Ueki, Katsuji ^a  

^a YAMAGATA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ALCOHOL; CARBON DIOXIDE; CELLOBIOSE; CELLULOSE; CYTOSINE; DIAMINO ACID; DIAMINOPIMELIC ACID; FRUCTOSE; GENOMIC DNA; GLUCOSE; GUANINE; HYDROGEN; OLIGOSACCHARIDE; RNA 16S; UNCLASSIFIED DRUG; XYLAN; XYLOOLIGOSACCHARIDE; XYLOSE; FATTY ACID; METHANE;

AGRICULTURAL WASTE; ARTICLE; BACTERIAL FLAGELLUM; BACTERIAL GENE; BACTERIAL SPORE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CATTLE; CELL MOTILITY; CLOSTRIDIUM; CLOSTRIDIUM HUNGATEI; CLOSTRIDIUM PAPYROSOLVENS; CLOSTRIDIUM SUFFLAVUM; CLOSTRIDIUM TERMITIDIS; CONTROLLED STUDY; DNA BASE COMPOSITION; GENE SEQUENCE; HEAT TOLERANCE; METHANOGENIC BACTERIUM; MICROBIAL MORPHOLOGY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; ANAEROBIC GROWTH; ANIMAL; ANIMAL HUSBANDRY; BACTERIUM IDENTIFICATION; BIOREACTOR; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; JAPAN; METABOLISM; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; RICE; RNA GENE; SPECIES DIFFERENCE; WASTE DISPOSAL;

BACTERIA (MICROORGANISMS); BOS; CLOSTRIDIUM; CLOSTRIDIUM HUNGATEI; CLOSTRIDIUM PAPYROSOLVENS; CLOSTRIDIUM TERMITIDIS; NEGIBACTERIA;

ANAEROBIOSIS; ANIMAL HUSBANDRY; ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BIOREACTORS; CATTLE; CLOSTRIDIUM; FATTY ACIDS; GENES, RRNA; JAPAN; METHANE; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; REFUSE DISPOSAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67649774954     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.001719-0     Document Type: Article

References (30)

1. Akasaka, H., Izawa, T., Ueki, K. & Ueki, A. (2003a). Phylogeny of numerically abundant culturable anaerobic bacteria associated with degradation of rice plant residue in Japanese paddy field soil. FEMS Microbiol Ecol 43, 149-161.
2. Akasaka, H., Ueki, A., Hanada, S., Kamagata, Y. & Ueki, K. (2003b). Propionicimonas paludicola gen. nov., sp. nov., a novel facultatively anaerobic, Gram-positive, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil. Int J Syst Evol Microbiol 53, 1991-1998.
3. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
4. Blenden, D. C. & Goldberg, H. S. (1965). Silver impregnation stain for Leptospira and flagella. J Bacteriol 89, 899-900.
5. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., FernandezGarayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E. (1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
6. Hethener, P., Brauman, A. & Garcia, J. L. (1992). Clostridium termitidis sp. nov., a cellulolytic bacterium from the gut of the woodfeeding termite, Nasutitermes lujae. Syst Appl Microbiol 15, 52-58.
7. Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
8. Hungate, R. E. (1966). The Rumen and Its Microbes. New York: Academic Press.
9. Kaku, N., Ueki, A., Fujii, H. & Ueki, K. (2000). Methanogenic activities on rice roots and plant residue and their contributions to methanogenesis in wetland rice field soil. Soil Biol Biochem 32, 2001-2010.
10. Kato, S., Haruta, S., Cui, Z. J., Ishii, M., Yokota, A. & Igarashi, Y. (2004). Clostridium straminisolvens sp. nov., a moderately thermophilic, aerotolerant and cellulolytic bacterium isolated from a cellulose-degrading bacterial community. Int J Syst Evol Microbiol 54, 2043-2047.
11. Komagata, K. & Suzuki, K. (1987). Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161-207.
12. Kopečný, J. & Hodrová, B. (1997). The effect of yellow affinity substance on cellulases of Ruminococcus flavefaciens. Lett Appl Microbiol 25, 191-196.
13. Ljungdahl, L. G., Pettersson, B., Eriksson, K. E. & Wiegel, J. (1983). A yellow affinity substance involved in the cellulolytic system of Clostridium thermocellum. Curr Microbiol 9, 195-200.
14. Madden, R. H., Bryder, M. J. & Poole, N. J. (1982). Isolation and characterization of an anaerobic, cellulolytic bacterium, Clostridium papyrosolvens sp. nov. Int J Syst Bacteriol 32, 87-91.
15. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxyl acids. J Clin Microbiol 16, 584-586.
16. Miyagawa, E., Azuma, R. & Suto, E. (1979). Cellular fatty acid composition in Gram-negative obligately anaerobic rods. J Gen Appl Microbiol 25, 41-51.
17. Monserrate, E., Leschine, S. B. & Canale-Parola, E. (2001). Clostridium hungatei sp. nov., a mesophilic, N2-fixing cellulolytic bacterium isolated from soil. Int J Syst Evol Microbiol 51, 123-132.
18. Moore, L. V. H., Bourne, D. M. & Moore, W. E. C. (1994). Comparative distribution and taxonomic value of cellular fatty acids in thirty-three genera of anaerobic Gram-negative bacilli. Int J Syst Bacteriol 44, 338-347.
19. Petitdemange, E., Caillet, F., Giallo, J. & Gaudin, C. (1984). Clostridium cellulolyticum sp. nov., a cellulolytic, mesophilic species from decayed grass. Int J Syst Bacteriol 34, 155-159.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
22. Sukhumavasi, J., Ohmiya, K., Shimizu, S. & Ueno, K. (1988). Clostridium josui sp. nov., a cellulolytic, moderate thermophilic species from Thai compost. Int J Syst Bacteriol 38, 179-182.
23. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
24. Ueki, A. & Suto, T. (1979). Cellular fatty acid composition of sulfatereducing bacteria. J Gen Appl Microbiol 25, 185-196.
25. Ueki, A., Matsuda, K. & Ohtsuki, C. (1986). Sulfate reduction in the anaerobic digestion of animal waste. J Gen Appl Microbiol 32, 111-123.
26. Ueki, A., Akasaka, H., Suzuki, D. & Ueki, K. (2006a). Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gramnegative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. Int J Syst Evol Microbiol 56, 39-44.
27. Ueki, A., Akasaka, H., Suzuki, D., Hattori, S. & Ueki, K. (2006b). Xylanibacter oryzae gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, xylanolytic bacterium isolated from rice-plant residue in flooded rice-field soil in Japan. Int J Syst Evol Microbiol 56, 2215-2221.
28. Ueki, A., Akasaka, H., Suzuki, D., Satoh, A. & Ueki, K. (2007). Prevotella paludivivens sp. nov., a novel strictly anaerobic, Gramnegative, hemicellulose-decomposing bacterium isolated from plant residue and rice roots in irrigated rice-field soil. Int J Syst Evol Microbiol 57, 1803-1809.
29. Wallace, W. H. & Gates, J. E. (1986). Identification of Eubacteria isolated from leaf cavities of four species of the N-fixing Azolla fern as Arthrobacter Conn and Dimmick. Appl Environ Microbiol 52, 425-429.
30. Willems, A. & Collins, M. D. (1995). Phylogenetic analysis of Ruminococcus flavefaciens, the type species of the genus Ruminococcus, does not support the reclassification of Streptococcus hansenii and Peptostreptococcus productus as ruminococci. Int J Syst Bacteriol 45, 572-575.