Discovery and characterization of a novel extremely acidic bacterial N-glycanase with combined advantages of PNGase F and A

Bioscience Reports

Volumn 34, Issue 6, 2014, Pages 673-684

  Wang, Ting ^a   Cai, Zhi P ^a   Gu, Xiao Q ^a   Ma, Hong Y ^a   Du, Ya M ^a   Huang, Kun ^a   Voglmeir, Josef ^a   Liu, Li ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

Carbohydrate processing; Core fucosylation; Glycoprotein structure; N linked glycosylation; PNGase; Terriglobus

Indexed keywords

ALPHA 1,3 FUCOSYLATED OLIGOSACCHARIDE; GLYCAN; GLYCOPEPTIDASE; GLYCOPEPTIDE; GLYCOPROTEIN; MANNOSE; PEPTIDE N4 (N ACETYL BETA GLUCOSAMINYL)ASPARAGINE AMIDASE A; PEPTIDE N4 (N ACETYL BETA GLUCOSAMINYL)ASPARAGINE AMIDASE F; RECOMBINANT ENZYME; UNCLASSIFIED DRUG; ACID; BACTERIAL PROTEIN; POLYSACCHARIDE; RECOMBINANT PROTEIN;

ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME PURIFICATION; ENZYME SPECIFICITY; ENZYME STRUCTURE; ESCHERICHIA COLI; GENE EXPRESSION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SOIL MICROFLORA; TERRIGLOBUS ROSEUS; ACIDOBACTERIA; AMINO ACID SEQUENCE; CHEMISTRY; ENZYMOLOGY; GENETICS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; METABOLISM; MOLECULAR GENETICS; PH; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROCEDURES;

BACTERIA (MICROORGANISMS);

ACIDOBACTERIA; ACIDS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; CLONING, MOLECULAR; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; GLYCOPEPTIDES; GLYCOPROTEINS; HYDROGEN-ION CONCENTRATION; MANNOSE; MOLECULAR SEQUENCE DATA; PEPTIDE-N4-(N-ACETYL-BETA-GLUCOSAMINYL) ASPARAGINE AMIDASE; POLYSACCHARIDES; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY;

EID: 84915808226     PISSN: 01448463     EISSN: 15734935     Source Type: Journal    
DOI: 10.1042/BSR20140148     Document Type: Article

References (33)

1. Schiel, J. E., Au, J., He, H. J. and Phinney, K. W. (2012) LC-MS/MS biopharmaceutical glycoanalysis: identification of desirable reference material characteristics. Anal. Bioanal. Chem. 403, 2279-2289
2. Wang, T. and Voglmeir, J. (2014) PNGases as valuable tools in glycoprotein analysis. Protein Pept. Lett. 21, 976-985
3. Barsomian, G. D., Johnson, T. L., Borowski, M., Denman, J., Ollington, J. F., Hirani, S., McNeilly, D. S. and Rasmussen, J. R. (1990) Cloning and expression of peptide-N4-(N-acetyl-beta-D -glucosaminyl)asparagine amidase F in Escherichia coli. J. Biol. Chem. 265, 6967-6972
4. Lemp, D., Haselbeck, A. and Klebl, F. (1990) Molecular cloning and heterologous expression of N-glycosidase F from Flavobacterium meningosepticum. J. Biol. Chem. 265, 15606-15610
5. Takahashi, N. (1977) Demonstration of a new amidase acting on glycopeptides. Biochem. Biophys. Res. Commun. 76, 1194-1201
6. Staudacher, E., Altmann, F., Wilson, I. B. and Marz, L. (1999) Fucose in N-glycans: from plant to man. Biochim. Biophys. Acta 1473, 216-236
7. Wilson, I. B., Zeleny, R., Kolarich, D., Staudacher, E., Stroop, C. J., Kamerling, J. P. and Altmann, F. (2001) Analysis of Asn-linked glycans from vegetable foodstuffs: widespread occurrence of Lewis a, core alpha1,3-linked fucose and xylose substitutions. Glycobiology 11, 261-274
8. Tretter, V., Altmann, F. and Marz, L. (1991) Peptide-N4-(N-acetyl-beta-glucosaminyl) asparagine amidase F cannot release glycans with fucose attached alpha 1-3 to the asparagine-linked N-acetylglucosamine residue. Eur. J. Biochem. 199, 647-652
9. Altmann, F., Schweiszer, S. and Weber, C. (1995) Kinetic comparison of peptide: N-glycosidases F and A reveals several differences in substrate specificity. Glycoconjugate J. 12, 84-93
10. Plummer, T. H., Phelan, A. W. and Tarentino, A. L. (1987) Detection and quantification of peptide-N4-(N-acetyl-β-glucosaminyl) asparagine amidases. Eur. J. Biochem. 163, 167-173
11. Tarentino, A. L. and Plummer, T. (1982) Oligosaccharide accessibility to peptide: N-glycosidase as promoted by protein-unfolding reagents. J. Biol. Chem. 257, 10776-10780
12. Altmann, F., Paschinger, K., Dalik, T. and Vorauer, K. (1998) Characterisation of peptide-N4-(N-acetyl-beta-glucosaminyl) asparagine amidase A and its N-glycans. Eur. J. Biochem. 252, 118-123
13. Kevin, C., Thomas, A., Agata, N., Stuart, M. H., Maria, P., Howard, R. M., Mike, A. L. and Anne, D. (2012) Mapping the N-glycome of human von Willebrand factor. Biochem. J. 447, 217-228
14. Song, W., Henquet, M. G., Mentink, R. A., van Dijk, A. J., Cordewener, J. H., Bosch, D., America, A. H. and van der Krol, A. R. (2011) N-glycoproteomics in plants: perspectives and challenges. J. Proteomics 74, 1463-1474
15. Ftouhi-Paquin, N., Hauer, C. R., Stack, R. F., Tarentino, A. L. and Plummer, T. H. (1997) Molecular cloning, primary structure, and properties of a new glycoamidase from the fungus Aspergillus tubigensis. J. Biol. Chem. 272, 22960-22965
16. Hossain, M. A., Nakano, R., Nakamura, K. and Kimura, Y. (2010) Molecular identification and characterization of an acidic peptide: N-glycanase from tomato (Lycopersicum esculentum) fruits. J. Biochem. (Tokyo). 147, 157-165
17. Kyrpides, N. C. (2009) Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat. Biotechnol. 27, 627-632
18. Benson, D. A., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. and Wheeler, D. L. (2008) GenBank. Nucleic Acids Res. 36, D25-D30
19. Mahuku, G. S. (2004) A simple extraction method suitable for PCR-based analysis of plant, fungal, and bacterial DNA. Plant Mol. Biol. Rep. 22, 71-81
20. Ceroni, A., Maass, K., Geyer, H., Geyer, R., Dell, A. and Haslam, S. M. (2008) GlycoWorkbench: a tool for the computer-assisted annotation of mass spectra of glycans. J. Proteome Res. 7, 1650-1659
21. Ahn, J., Bones, J., Yu, Y. Q., Rudd, P. M. and Gilar, M. (2010) Separation of 2-aminobenzamide labeled glycans using hydrophilic interaction chromatography columns packed with 1.7 μm sorbent. J. Chromatogr. B, Anal. Technol. Biomed. Life Sci. 878, 403-408
22. van Leeuwen, S. S., Schoemaker, R. J., Timmer, C. J., Kamerling, J. P. and Dijkhuizen, L. (2012) Use of Wisteria floribunda agglutinin affinity chromatography in the structural analysis of the bovine lactoferrin N-linked glycosylation. Biochim. Biophys. Acta 1820, 1444-1455
23. Yang, B. Y., Gray, J. S. and Montgomery, R. (1996) The glycans of horseradish peroxidase. Carbohydr. Res. 287, 203-212
24. Petersen, T. N., Brunak, S., von Heijne, G. and Nielsen, H. (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785-786
25. Eichorst, S. A., Breznak, J. A. and Schmidt, T. M. (2007) Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl. Environ. Microbiol. 73, 2708-2717
26. Lhernould, S., Karamanos, Y., Lerouge, P. and Morvan, H. (1995) Characterization of the peptide-N4-(N-acetylglucosaminyl) asparagine amidase (PNGase Se) from Silene alba cells. Glycoconjugate J. 12, 94-98
27. Sheldon, P., Keen, J. and Bowles, D. (1998) Purification and characterization of N-glycanase, a concanavalin A binding protein from jackbean (Canavalia ensiformis). Biochem. J. 330, 13-20
28. Chang, T., Kuo, M. C., Khoo, K. H., Inoue, S. and Inoue, Y. (2000) Developmentally regulated expression of a peptide: N-glycanase during germination of rice seeds (Oryza sativa) and its purification and characterization. J. Biol. Chem. 275, 129-134
29. Suzuki, T., Seko, A., Kitajima, K., Inoue, Y. and Inoue, S. (1994) Purification and enzymatic properties of peptide: N-glycanase from C3H mouse-derived L-929 fibroblast cells. Possible widespread occurrence of post-translational remodification of proteins by N-deglycosylation. J. Biol. Chem. 269, 17611-17618
30. Takahashi, N. and Nishibe, H. (1978) Some characteristics of a new glycopeptidase acting on aspartylglycosylamine linkages. J. Biochem. (Tokyo) 84, 1467-1473
31. Tarentino, A. L., Gomez, C. M. and Plummer Jr, T. H. (1985) Deglycosylation of asparagine-linked glycans by peptide: N-glycosidase F. Biochemistry 24, 4665-4671
32. Hua, S., Nwosu, C. C., Strum, J. S., Seipert, R. R., An, H. J., Zivkovic, A. M., German, J. B. and Lebrilla, C. B. (2012) Site-specific protein glycosylation analysis with glycan isomer differentiation. Anal. Bioanal. Chem. 403, 1291-1302
33. Wuhrer, M., Balog, C. I., Koeleman, C. A., Deelder, A. M. and Hokke, C. H. (2005) New features of site-specific horseradish peroxidase (HRP) glycosylation uncovered by nano-LC-MS with repeated ion-isolation/fragmentation cycles. Biochim. Biophys. Acta 1723, 229-239