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F1000Research
Volumn 3, Issue , 2014, Pages
shinyMethyl: Interactive quality control of Illumina 450k DNA methylation arrays in R
Author keywords

[No Author keywords available]
Indexed keywords

ARTICLE; BIOCONDUCTOR; COMPUTER PROGRAM; CONDUCTOR; DATA ANALYSIS SOFTWARE; DNA METHYLATION; EPIGENETICS; GENE DOSAGE; GENETIC ASSOCIATION; HEAD AND NECK CARCINOMA; ILLUMINATION; PHENOTYPE; PRINCIPAL COMPONENT ANALYSIS; QUALITY CONTROL; SQUAMOUS CELL CARCINOMA; WORKFLOW;
EID: 84915750107     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.4680.2     Document Type: Article
Times cited : (85)
References (10)
  • 1
    • 84914811758 scopus 로고    scopus 로고
    • shiny: Web Application Framework for R
    • R Studio and Inc, Reference Source
    • R Studio and Inc. shiny: Web Application Framework for R. R package version 0.10.0.2014. Reference Source
    • (2014)
  • 2
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • 6185846
    • Feinberg AP Vogelstein B: Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature. 1983;301(5895):89-92. 6185846 10.1038/301089a0
    • (1983) Nature , vol.301 , Issue.5895 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 3
    • 80053304450 scopus 로고    scopus 로고
    • High density DNA methylation array with single CpG site resolution
    • 21839163
    • Bibikova M Barnes B Tsan C: High density DNA methylation array with single CpG site resolution. Genomics. 2011;98(4):288-95. 21839163 10.1016/j.ygeno.2011.07.007
    • (2011) Genomics , vol.98 , Issue.4 , pp. 288-295
    • Bibikova, M.1    Barnes, B.2    Tsan, C.3
  • 4
    • 84897548625 scopus 로고    scopus 로고
    • Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA Methylation microarrays
    • 24478339, 4016708
    • Aryee MJ Jaffe AE Corrada-Bravo H: Minfi: A flexible and comprehensive Bioconductor package for the analysis of Infinium DNA Methylation microarrays. Bioinformatics. 2014;30(10):1363-1369. 24478339 10.1093/bioinformatics/btu049 4016708
    • (2014) Bioinformatics , vol.30 , Issue.10 , pp. 1363-1369
    • Aryee, M.J.1    Jaffe, A.E.2    Corrada-Bravo, H.3
  • 5
    • 84904722410 scopus 로고    scopus 로고
    • illuminaio: An open source IDAT parsing tool for Illumina microarrays
    • 24701342, 3968891
    • Smith ML Baggerly KA Bengtsson H: illuminaio: An open source IDAT parsing tool for Illumina microarrays. F1000Res. 2013;2:264. 24701342 10.12688/f1000research.2-264.v1 3968891
    • (2013) F1000Res , vol.2 , pp. 264
    • Smith, M.L.1    Baggerly, K.A.2    Bengtsson, H.3
  • 6
    • 77956873627 scopus 로고    scopus 로고
    • Tackling the widespread and critical impact of batch effects in high-throughput data
    • 20838408, 3880143
    • Leek JT Scharpf RB Bravo HC: Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet 2010;11(10):733-739. 20838408 10.1038/nrg2825 3880143
    • (2010) Nat Rev Genet , vol.11 , Issue.10 , pp. 733-739
    • Leek, J.T.1    Scharpf, R.B.2    Bravo, H.C.3
  • 7
    • 84915807172 scopus 로고    scopus 로고
    • Functional normalization of 450k methylation array data improves replication in large cancer studies
    • Fortin JP Labbe A Lemire M: Functional normalization of 450k methylation array data improves replication in large cancer studies. bioRxiv. 2014. 10.1101/002956
    • (2014) bioRxiv
    • Fortin, J.P.1    Labbe, A.2    Lemire, M.3
  • 8
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: open software development for computational biology and bioinformatics
    • 15461798, 545600
    • Gentleman RC Carey VJ Bates DM: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004;5(10):R80. 15461798 10.1186/gb-2004-5-10-r80 545600
    • (2004) Genome Biol , vol.5 , Issue.10 , pp. R80
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 9
    • 0020699979 scopus 로고
    • Hypomethylation distinguishes genes of some human cancers from their normal counterparts
    • 6185846
    • Feinberg AP Vogelstein B: Hypomethylation distinguishes genes of some human cancers from their normal counterparts. Nature. 1983;301(5895):89-92. 6185846 10.1038/301089a0
    • (1983) Nature , vol.301 , Issue.5895 , pp. 89-92
    • Feinberg, A.P.1    Vogelstein, B.2
  • 10
    • 84915807171 scopus 로고    scopus 로고
    • F1000Research/shinyMhethyl
    • Data Source
    • Fortin JP Hansen KD: F1000Research/shinyMhethyl. ZENODO. 2014. Data Source
    • (2014) ZENODO
    • Fortin, J.P.1    Hansen, K.D.2

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.