-
1
-
-
85034766967
-
affyio: Tools for parsing Affymetrix data files
-
Reference Source, R package version 1.30.0.
-
Bolstad BM: affyio: Tools for parsing Affymetrix data files. R package version 1.30.0. Reference Source
-
-
-
Bolstad, B.M.1
-
2
-
-
84914821228
-
affxparser: Affymetrix File Parsing SDK
-
Reference Source, R package version 1.34.0
-
Bengtsson H Bullard J Hansen KD: affxparser: Affymetrix File Parsing SDK, R package version 1.34.0.2013. Reference Source
-
(2013)
-
-
Bengtsson, H.1
Bullard, J.2
Hansen, K.D.3
-
3
-
-
34548561818
-
beadarray: R classes and methods for Illumina bead-based data
-
17586828
-
Dunning MJ Smith ML Ritchie ME: beadarray: R classes and methods for Illumina bead-based data. Bioinformatics. 2007;23(16):2183-2184. 17586828 10.1093/bioinformatics/btm311
-
(2007)
Bioinformatics
, vol.23
, Issue.16
, pp. 2183-2184
-
-
Dunning, M.J.1
Smith, M.L.2
Ritchie, M.E.3
-
4
-
-
46249088370
-
lumi: a pipeline for processing Illumina microarray
-
18467348
-
Du P Kibbe WA Lin SM: lumi: a pipeline for processing Illumina microarray. Bioinformatics. 2008;24(13):1547-1548. 18467348 10.1093/bioinformatics/btn224
-
(2008)
Bioinformatics
, vol.24
, Issue.13
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
5
-
-
33644872577
-
Limma: linear models for microarray data
-
Bioinformatics and Computational Biology Solutions Using R and Bioconductor, Reference Source, R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber, editors
-
Smyth GK: Limma: linear models for microarray data. In R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, and W. Huber, editors, Bioinformatics and Computational Biology Solutions Using R and Bioconductor,2005;397-420. Springer, New York. Reference Source
-
(2005)
, pp. 397-420
-
-
Smyth, G.K.1
-
6
-
-
33646361583
-
GenePattern 2.0
-
16642009
-
Reich M Liefeld T Gould J: GenePattern 2.0. Nat Genet. 2006;38(5):500-501. 16642009 10.1038/ng0506-500
-
(2006)
Nat Genet
, vol.38
, Issue.5
, pp. 500-501
-
-
Reich, M.1
Liefeld, T.2
Gould, J.3
-
7
-
-
84876538609
-
Low-level processing of Illumina Infinium DNA Methylation BeadArrays
-
Jr, 23476028, 3627582
-
Triche TJ Jr Weisenberger DJ Van Den Berg D: Low-level processing of Illumina Infinium DNA Methylation BeadArrays. Nucleic Acids Res. 2013;41(7):e90. 23476028 10.1093/nar/gkt090 3627582
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.7
, pp. e90
-
-
Triche, T.J.1
Weisenberger, D.J.2
Van Den Berg, D.3
-
8
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
15461798, 545600
-
Gentleman RC Carey VJ Bates DM: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004;5(10):R80. 15461798 10.1186/gb-2004-5-10-r80 545600
-
(2004)
Genome Biol
, vol.5
, Issue.10
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
-
9
-
-
84863304598
-
R: A Language and Environment for Statistical Computing
-
R Foundation for Statistical Computing, Vienna, Austria, Reference Source
-
R Core Team. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria,2013. Reference Source
-
(2013)
-
-
-
10
-
-
77956873627
-
Tackling the widespread and critical impact of batch effects in high-throughput data
-
20838408
-
Leek JT Scharpf RB Bravo HC: Tackling the widespread and critical impact of batch effects in high-throughput data. Nat Rev Genet. 2010;11(10):733-739. 20838408 10.1038/nrg2825
-
(2010)
Nat Rev Genet
, vol.11
, Issue.10
, pp. 733-739
-
-
Leek, J.T.1
Scharpf, R.B.2
Bravo, H.C.3
-
12
-
-
84872536416
-
minfi: Analyze Illumina's 450k methylation arrays
-
Reference Source, R package version 1.8.3.
-
Hansen KD Aryee M: minfi: Analyze Illumina's 450k methylation arrays,2013. R package version 1.8.3. Reference Source
-
(2013)
-
-
Hansen, K.D.1
Aryee, M.2
-
13
-
-
84914821480
-
methylumi: Handle Illumina methylation data
-
Reference Source, R package version 2.8.0
-
Davis S Du P Bilke S: methylumi: Handle Illumina methylation data, R package version 2.8.0.2013. Reference Source
-
(2013)
-
-
Davis, S.1
Du, P.2
Bilke, S.3
-
14
-
-
70349874808
-
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
-
19661241, 2752620
-
Ritchie ME Carvalho BS Hetrick KN: R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. Bioinformatics. 2009;25(19):2621-2623. 19661241 10.1093/bioinformatics/btp470 2752620
-
(2009)
Bioinformatics
, vol.25
, Issue.19
, pp. 2621-2623
-
-
Ritchie, M.E.1
Carvalho, B.S.2
Hetrick, K.N.3
-
15
-
-
79961240137
-
Using the R Package crlmm for Genotyping and Copy Number Estimation
-
22523482, 3329223
-
Scharpf RB Irizarry RA Ritchie ME: Using the R Package crlmm for Genotyping and Copy Number Estimation. J Stat Softw. 2011;40(12):1-32. 22523482 3329223
-
(2011)
J Stat Softw
, vol.40
, Issue.12
, pp. 1-32
-
-
Scharpf, R.B.1
Irizarry, R.A.2
Ritchie, M.E.3
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