Phylogenetic relationships of Mesoamerican spider monkeys (Ateles geoffroyi): Molecular evidence suggests the need for a revised taxonomy

Molecular Phylogenetics and Evolution

Volumn 82, Issue PB, 2015, Pages 484-494

  Morales Jimenez, Alba Lucia ^a,b   Cortés Ortiz, Liliana ^c   Di Fiore, Anthony ^a,d  

^a NEW YORK UNIVERSITY   (United States)

^b Fundación Biodiversa Colombia FBC   (Colombia)

^c UNIVERSITY OF MICHIGAN   (United States)

^d UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

D loop; Divergence time; Mesoamerica; Mitochondrial DNA; Phylogenetic analysis; Primates

Indexed keywords

ATELES GEOFFROYI; ATELES PANISCUS; ATELES SP.; PRIMATES;

MITOCHONDRIAL DNA;

ANIMAL; ATELINAE; BAYES THEOREM; BIOLOGICAL MODEL; CENTRAL AMERICA; CHROMOSOME MAP; CLASSIFICATION; DNA SEQUENCE; EVOLUTION; GENETICS; GEOGRAPHY; MEXICO; PHYLOGENY; STATISTICAL MODEL;

ANIMALS; ATELINAE; BAYES THEOREM; BIOLOGICAL EVOLUTION; CENTRAL AMERICA; CHROMOSOME MAPPING; DNA, MITOCHONDRIAL; GEOGRAPHY; LIKELIHOOD FUNCTIONS; MEXICO; MODELS, GENETIC; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 84914811199     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2014.08.025     Document Type: Article

References (45)

1. Agapow P.M. Species demarcation and diversity. Phylogeny and Conservation 2005, 57-75. Cambridge University Press, Cambridge. A. Purvis, J.L. Gittleman, T. Brooks (Eds.).
2. Ahumada J.A. Behavior and social structure of free ranging spider monkeys (Ateles belzebuth) in La Macarena. Field Studies of New World Monkeys, La Macarena, Colombia 1989, 2:7-31.
3. Avise J.C. Phylogeography: The History and Formation of Species 2000, Harvard University Press, Cambridge, MA, pp. 447.
4. Avise J.C. Molecular Markers, Natural History, and Evolution 2004, Sinauer Associates, Inc., Publishers, Sunderland, Massachusets, pp. 684.
5. Bell K.C., Hafner D.J., Leitner P., Matocq M.D. Phylogeography of the ground squirrel subgenus Xerospermophilus and assembly of the Mojave Desert biota. J. Biogeogr. 2010, 37:363-378.
6. Bruna E.M., Fisher R.N., Case T.J. Morphological and genetic evolution appear decoupled in Pacific skinks (Squamata: Scincidae: Emoia). Proc. Biol. Sci. 1996, 263:681-688.
7. Charruau P., Fernandes C., Orozco-ter Wengel P., Peters J., Hunter L., Ziaie H., Jourabchian A., Jowkar H., Schaller G., Ostrowski S., et al. Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. Mol. Ecol. 2011, 20:706-724.
8. Collins A.C., Dubach J.M. Phylogenetic relationships of spider monkeys (Ateles) based on mitochondrial DNA variation. Int. J. Primatol. 2000, 21:381-420.
9. Collins A.C., Dubach J.M. Nuclear DNA variation in spider monkeys (Ateles). Mol. Phylogenet. Evol. 2001, 19:67-75.
10. Cortés-Ortiz L., Bermingham E., Rico C., Rodríguez-Luna E., Sampaio I., Ruiz-García M. Molecular systematics and biogeography of the Neotropical monkey genus, Alouatta. Mol. Phylogenet. Evol. 2003, 26:64-81.
11. Cracraft J. Species concepts and speciation analysis. Curr. Ornithol. 1983, 1:159-187.
12. Craul M., Zimmermann E., Rasoloharijaona S., Randrianambinina B., Radespiel U. Unexpected species diversity of Malagasy primates (Lepilemur spp.) in the same biogeographical zone: a morphological and molecular approach with the description of two new species. BMC Evol. Biol. 2007, 7:83-95.
13. Cuarón, A.D., Morales, A., Shedden, A., Rodriguez-Luna, E., de Grammont, P.C., Cortés-Ortiz, L., 2008. Ateles geoffroyi. IUCN 2013. IUCN Red List of Threatened Species. Version 2013.2. (03.01.14). http://www.iucnredlist.org.
14. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
15. Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
16. Estrada A., Garber P.A., Pavelka M.S.M., Luecke L. New Perspectives in the Study of Mesoamerican Primates: Distribution, Ecology, and Conservation 2006, Springer. xvi, New York, pp. 600.
17. Ford S.M. The biogeographic history of Mesoamerican primates. New Perspectives in the Study of Mesoamerican Primates: Distribution, Ecology, and Conservation 2006, 81-114. Springer, New York. A. Estrada, P.A. Garber, M.S.M. Pavelka, L. Luecke (Eds.).
18. Froehlich J.W., Supriatna J., Froehlich P.H. Morphometric analyses of Ateles - systematic and biogeographic implications. Am. J. Primatol. 1991, 25:1-22.
19. Groves C.P. Primate Taxonomy 2001, Smithsonian Institution Press. viii, Washington, DC, pp. 350.
20. Groves C. The what, why and how of primate taxonomy. Int. J. Primatol. 2004, 25:1105-1126.
21. Jacobs S.C., Larson A., Cheverud J.M. Phylogenetic relationships and orthogenetic evolution of coat color among tamarins (genus Saguinus). Syst. Biol. 1995, 44:515-532.
22. Kellogg R., Goldman E.A. Review of the spider monkeys. Proc. US Natl. Museum 1944, 96:1-45.
23. Konstant W., Mittermeier R.A., Nash S.D. Spider monkeys in captivity and in the wild. Primate Conservation 1985, 5:82-109.
24. Lanfear R., Calcott B., Ho S.Y.W., Guindon S. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Mol. Biol. Evol. 2012, 29:1695-1701.
25. Li M., Liu Z.J., Gou J.X., Ren B.P., Pan R.L., Su Y.J., Funk S.A., Wei F.W. Phylogeography and population structure of the golden monkeys (Rhinopithecus roxellana): inferred from mitochondrial DNA sequences. Am. J. Primatol. 2007, 69:1195-1209.
26. Matauschek C., Roos C., Heymann E.W. Mitochondrial phylogeny of tamarins (Saguinus, Hoffmannsegg 1807) with taxonomic and biogeographic implications for the S. nigricollis species group. Am. J. Phys. Anthropol. 2011, 144:564-574.
27. Meyer D., Rinaldi I.D., Ramlee H., Perwitasari-Farajallah D., Hodges J.K., Roos C. Mitochondrial phylogeny of leaf monkeys (genus Presbytis, Eschscholtz, 1821) with implications for taxonomy and conservation. Mol. Phylogenet. Evol. 2011, 59:311-319.
28. Miller, M.A., Pfeiffer, W., Schwartz, T., 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. In: Proceedings of the Gateway Computing Environments Workshop (GCE). New Orleans, LA.
29. Morales-Jimenez A.J., Disotell T.R., Di Fiore A. Revisiting the phylogenetic relationships, biogeography, and taxonomy of spider monkeys (genus Ateles) in light of new molecular data. Mol. Phylogenet. Evol. 2015, 82(PB):467-483.
30. Napier P.H. Catalogue of Primates in the British Museum (Natural History): Families Callitrichidae and Cebidae 1976, Part I: British Museum (Natural History), London, pp. 121.
31. Nelson G.J. Phylogenetic relationship and classification. Syst. Zool. 1972, 21:227-231.
32. Nunez J.J., Wood N.K., Rabanal F.E., Fontanella F.M., Sites J.W. Amphibian phylogeography in the Antipodes: Refugia and postglacial colonization explain mitochondrial haplotype distribution in the Patagonian frog Eupsophus calcaratus (Cycloramphidae). Mol. Phylogenet. Evol. 2011, 58:343-352.
33. Nylander J.A.A. MrModeltest v2. Program Distributed by the Author 2004, Evolutionary Biology Centre, Uppsala University.
34. Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
35. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
36. Rylands A.B., Groves C.P., Mittermeier R.A., Cortes-Ortiz L., Hines J.J.H. Taxonomy and distributions of Mesoamerican primates. New Perspectives in the Study of Mesoamerican Primates: Distribution, Ecology, and Conservation 2006, 29-79. Springer, New York. A. Strada, P.A. Garber, M.S.M. Pavelka, L. Luecke (Eds.).
37. Silva-Lopez G., Motta-Gill J., Sanchez Hernandez A.I. Taxonomic notes on Ateles geoffroyi. Neotropical Primates 1996, 4:41-44.
38. Sinclair E.A., Perez-Losada M., Crandal K.A. Molecular phylogenetics for conservation biology. Phylogeny and Conservation 2005, 19-56. Cambridge University Press, Cambridge. A. Purvis, J.L. Gittleman, T. Brooks (Eds.).
39. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
40. Symington M.M. Demography, ranging patterns, and activity budgets of black spider monkeys (Ateles paniscus chamek) in the Manu-National Park, Peru. Am. J. Primatol. 1988, 15:45-67.
41. Symington M.M. Fission-fusion social organization in Ateles and Pan. Int. J. Primatol. 1990, 11:47-61.
42. Thinh V.N., Rawson B., Hallam C., Kenyon M., Nadler T., Walter L., Roos C. Phylogeny and distribution of crested gibbons (genus Nomascus) based on mitochondrial cytochrome b gene sequence data. Am. J. Primatol. 2010, 72:1047-1054.
43. Wildman D.E., Goodman M. Humankind's place in a phylogenetic classification of living primates. Evolutionary Theory and Processes: Modern Horizons, Papers in Honour of Eviatar Nevo 2004, 293-311. Kluwer, Netherlands. S. Wasser (Ed.).
44. Wright S. Isolation by distance. Genetics 1943, 28:114-138.
45. Zhang D.-X., Hewitt G.M. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 1996, 11:247-251.