Phylogeography and population structure of the golden monkeys (Rhinopithecus roxellana): Inferred from mitochondrial DNA sequences

American Journal of Primatology

Volumn 69, Issue 11, 2007, Pages 1195-1209

  Li, Ming ^a   Liu, Zhijin ^a,b   Gou, Jinxun ^a   Ren, Baoping ^a   Pan, Ruliang ^c   Su, Yanjie ^d   Funk, Stephan M ^e,f   Wei, Fuwen ^a  

^a INSTITUTE OF ZOOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c UNIVERSITY OF THE WITWATERSRAND   (South Africa)

^d PEKING UNIVERSITY   (China)

^e Nature Heritage Ltd   (United Kingdom)

^f DURRELL WILDLIFE CONSERVATION TRUST   (United Kingdom)

Author keywords

Conservation; Management unit; Mitochondrial DNA; Phylogeography; Population structure; Rhinopithecus roxellana

Indexed keywords

MITOCHONDRIAL DNA;

CLADISTICS; ENDANGERED SPECIES; GENETIC DIFFERENTIATION; MITOCHONDRIAL DNA; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION DECLINE; POPULATION STRUCTURE; PRIMATE; SPATIAL DISTRIBUTION;

ANIMAL; ARTICLE; CHEMISTRY; CHINA; COLOBINAE; COMPLEMENTARITY DETERMINING REGION; EVOLUTION; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; PHYLOGENY; POPULATION DENSITY;

ANIMALS; CHINA; COLOBINAE; COMPLEMENTARITY DETERMINING REGIONS; DNA, MITOCHONDRIAL; EVOLUTION; HAPLOTYPES; PHYLOGENY; POPULATION DENSITY; VARIATION (GENETICS);

ASIA; CHINA; EURASIA; FAR EAST; GANSU; HUBEI; QINLING MOUNTAINS; SHENNONGJIA; SICHUAN; SOUTHEAST ASIA; VIET NAM;

PRIMATES; PYGATHRIX ROXELLANA;

EID: 35648970108     PISSN: 02752565     EISSN: 10982345     Source Type: Journal    
DOI: 10.1002/ajp.20425     Document Type: Article

References (46)

1. Avise JC. 1998. The history and preview of phylogeography: a personal reflection. Mol Ecol 7:371-379.
2. Bradley BJ, Doran-Sheehy DM, Lukas D, Boesch C, Vigilant L. 2004. Dispersed male networks in western gorillas. Current Biology 6:510-513.
3. Clement M, Posada D, Crandall K. 2000. TCS: a computer program to estimate gene genealogies. Mol Ecol 10:1657-1660.
4. Crandall KA, Templeton AR. 1993. Empirical texts of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134:959-969.
5. Excoffier L, Smouse PE, Quattro JM. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:476-494.
6. Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147:915-925.
7. Gu YM, Hu C. 1991. A fossil cranium of Rhinopithecus found in Xinan, Henan Province. Vertebr Palasiatica 29:55-58.
8. Gu YM, Jablonski NG. 1989. A reassessment of Megamacaca lantianensis of Gongwangling, Shaanxi Province. Acta Anthropol Sin 8:343-346.
9. Han DG. 1982. Mammalian fossils from Tashin country, Guangxi. Vertebr Palasiatica 2:58-63.
10. Hayaishi S, Kawamoto Y. 2006. Low genetic diversity and biased distribution of mitochondrial DNA haplotypes in the Japanese macaque (Macaca fuscata yakui) on Yakushima Island. Primates 153:158-164.
11. Hewitt GM. 1996. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol J Linn Soc 58:247-276.
12. Hewitt GM. 1999. Post-glacial recolonization of European biota. Biol J Linn Soc 68:87-112.
13. Hewitt GM. 2004. Genetic consequences of climatic oscillations in the Quaternary. Phi Trans Bio Sci 359:183-195.
14. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
15. Jablonski NG, Pan YR. 1988. The evolution and palaeobiotive-geography of monkeys in China. In: Whyte P, Aigner J, Jablonski NG, Taylor G, Walker D, editors. The Palaeoenvironment of east Asia from the Mid-Tertiary, Vol. II. Hong Kong: Centre of Asian Studies. p 849-867.
16. Jablonski NG. 1998a. The evolution of the doucs and snub-nosed monkeys and the question of the phyletic unity of the odd-nosed colobines. In: Jablonski NG, editor. The natural of the doucs and snub-nosed monkeys. Singapore: World Scientific Publishing. p 13-52.
17. Jablonski NG. 1998b. The response of catarrhine primates to Pleistocene environmental fluctuations in East Asia. Primates 39:29-37.
18. Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX, Wilson AC. 1989. Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci USA 86:6196-6200.
19. Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Temple, AZ, USA: Arizona State University.
20. Li BG, Pan RL, Oxnard CE. 2002. Extinction of snub-nosed monkeys in China during the past 400 years. Int J Primatol 23:1227-1244.
21. Li HP, Meng SJ, Men ZM, Fu YX, Zhang YP. 2003. Genetic diversity and population history of golden monkeys (Rhinopithecus roxellana). Genetics 164:269-275.
22. Li M, Liang B, Tamate HB, Feng ZJ. 2001. Molecular phylogeny of Sichuan snub-nosed monkey (Rhinopithecus roxellae) with cytochrome b sequences. Primates 42:153-160.
23. Li M, Wei FW, Huang CM, Pan RL, deRuiter J. 2004. Phylogeny of snub-nosed monkeys inferred from mitochondrial DNA, cytochrome B and 12S rRNA sequences. Int J Primatol 25:861-873.
24. Long YC, Kirkpatrick C, Zhong T, Xiao L. 1994. Report on the distribution, population, and ecology of the Yunnan snub-nosed monkey. Primates 35:241-250.
25. Long YC, Kirkpatrick C, Zhong T, Xiao L. 1996. Status and conservation strategy of the Yunnan snub-nosed monkey. Chin Biodiversity 4:145-152.
26. Marmi J, Bertranpetit J, Terradas J, Takenaka O, Domingo-Roura X. 2004. Radiation and phylogeography in the Japanese macaque, Macaca fuscata. Mol Phly Evol 30:676-685.
27. Modolo L, Salzburger W, Martin RD. 2005. Phylogeography of Barbary macaques (Macaca sylvanus) and the origin of the Gibraltar colony. Proc Natl Acad Sci USA 102:7392-7397.
28. Moritz C. 1994. Applications of mitochondrial DNA analysis in conservation: a critical review. Mol Ecol 3:401-411.
29. Nei M. 1986. Molecular evolutionary genetics. New York: Columbia University Press.
30. Pan YR. 1995. Fossil primates discovered in China. In: Xia W, Zhang Y, editors. Primate research and conservation. Beijing: China Forestry Publishing House. p 99-105.
31. Pan RL, Oxnard CE, Groves C. 2004. Relationships between the fossil Colobine Mesopithecus pentelicus and extant Cercopithecoids, based on Dental Metrics. Am J Primatol 62:287-299.
32. Posada D, Crandall KA. 1998. MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818.
33. Quan GQ, Xie JY. 2002. Research on the golden monkey. Beijing: Science and Education Publishing House.
34. Rogers AR, Harpending H. 1992. Population growth makes waves in the distribution of pair-wise genetic differences. Mol Biol Evol 9:552-569
35. Ren RM, Su YJ, Yan KH, Li JJ, Zhou Y, Zhu ZQ, Zhang ZG, Hu YF. 1998. Preliminary survey of the social organization of Rhinopithecus roxellana in Shennongjia National Natural Reserve, Hubei, China. In: Jablonski NG, editor. The natural history of the doucs and snub-nosed monkeys. Singapore: World Scientific Publishing. p 269-277.
36. Rowe N. 1996. The pictorial guide to the living primates. East Hampton (New York): Pogonias Press.
37. Rozas J, Rozas R. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
38. Schneider S, Kueffer JM, Roessli D, Excoffier L. 2000. Arlequin 2.000: a software for population genetics data analysis. Geneva, Switzerland: Genetics and Biometry Laboratory, University of Geneva.
39. Swofford DL. 2000. PAUP*. Phylogenese analysis using parsimony (* and other methods). Version 4. Sunderland, MA: Sinauer Associates.
40. Tajima F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
41. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Proc Natl Acad Sci USA 25:4876-4882.
42. Vigilant L, Pennington R, Harpending H, Kocher TD, Wilson AC. 1991. Mitochondrial DNA sequences in single hairs from southern African populations. Proc Natl Acad Sci USA 86:9350-9354.
43. Walsh PS, Metzger DA, Higuchi R. 1991. Chelex-100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506-513.
44. Wang YX, Jiang XL, Li DW. 1998. Classification and distribution of the extant subspecies of golden snub-nosed monkey (Rhinopithecus roxellana). In: Jablonski NG, editor. The natural history of the doucs and snub-nosed monkeys. Singapore: World Scientific Publishing. p 53-64.
45. Winney BJ, Hammond RL, Macasero W, Flores B, Boug A, Biquand V. 2004. Crossing the Red Sea: phylogeography of the hamadryas baboon, Papio hamadryas hamadryas. Mol Ecol 13:2819-2827.
46. Zhou MZ. 1964. The change of Quaternary animal fauna in China. Chin J Zool 9:274-278.