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Volumn 30, Issue 47, 2014, Pages 14360-14367

Molecular beacon modified sensor chips for oligonucleotide detection with optical readout

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENCE; FLUORESCENCE MICROSCOPY; FLUORESCENCE SPECTROSCOPY; GOLD; MOLECULES; OLIGONUCLEOTIDES;

EID: 84913557883     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la504105x     Document Type: Article
Times cited : (15)

References (40)
  • 1
    • 0029829687 scopus 로고    scopus 로고
    • A fiber-optic DNA biosensor microarray for the analysis of gene expression
    • Ferguson, J. A.; Boles, T. C.; Adams, C. P.; Walt, D. R. A fiber-optic DNA biosensor microarray for the analysis of gene expression. Nat. Biotechnol. 1996, 14, 1681-1684.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 1681-1684
    • Ferguson, J.A.1    Boles, T.C.2    Adams, C.P.3    Walt, D.R.4
  • 2
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart, D. J.; Winzeler, E. A. Genomics, gene expression and DNA arrays. Nature 2000, 405, 827-836.
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 3
    • 70849108991 scopus 로고    scopus 로고
    • Drivers of biodiagnostic development
    • Giljohann, D. A.; Mirkin, C. A. Drivers of biodiagnostic development. Nature 2009, 462, 461-464.
    • (2009) Nature , vol.462 , pp. 461-464
    • Giljohann, D.A.1    Mirkin, C.A.2
  • 5
    • 5044225199 scopus 로고    scopus 로고
    • Encoded evidence: DNA in forensic analysis
    • Jobling, M. A.; Gill, P. Encoded evidence: DNA in forensic analysis. Nat. Rev. Genet. 2004, 5, 739-751.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 739-751
    • Jobling, M.A.1    Gill, P.2
  • 6
    • 0031963203 scopus 로고    scopus 로고
    • DNA chips: State-of-the art
    • Ramsay, G. DNA chips: State-of-the art. Nat. Biotechnol. 1998, 16, 40-44.
    • (1998) Nat. Biotechnol. , vol.16 , pp. 40-44
    • Ramsay, G.1
  • 7
    • 0035654137 scopus 로고    scopus 로고
    • Accessing genetic variation: Genotyping single nucleotide polymorphisms
    • Syvänen, A.-C. Accessing genetic variation: Genotyping single nucleotide polymorphisms. Nat. Rev. Genet. 2001, 2, 930-942.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 930-942
    • Syvänen, A.-C.1
  • 8
    • 33748163981 scopus 로고    scopus 로고
    • A microRNA detection system based on padlock probes and rolling circle amplification
    • Jonstrup, S. P.; Koch, J.; Kjems, J. A microRNA detection system based on padlock probes and rolling circle amplification. RNA 2006, 12, 1747-1752.
    • (2006) RNA , vol.12 , pp. 1747-1752
    • Jonstrup, S.P.1    Koch, J.2    Kjems, J.3
  • 9
    • 84857972182 scopus 로고    scopus 로고
    • Novel techniques and targets in cardiovascular microRNA research
    • Dangwal, S.; Bang, C.; Thum, T. Novel techniques and targets in cardiovascular microRNA research. Cardiovasc. Res. 2012, 93, 545-554.
    • (2012) Cardiovasc. Res. , vol.93 , pp. 545-554
    • Dangwal, S.1    Bang, C.2    Thum, T.3
  • 10
    • 0036605103 scopus 로고    scopus 로고
    • Stem-loop oligonucleotides: A robust tool for molecular biology and biotechnology
    • Broude, N. E. Stem-loop oligonucleotides: A robust tool for molecular biology and biotechnology. Trends Biotechnol. 2002, 20, 249-256.
    • (2002) Trends Biotechnol. , vol.20 , pp. 249-256
    • Broude, N.E.1
  • 11
    • 0035075442 scopus 로고    scopus 로고
    • Single-mismatch detection using gold-quenched fluorescent oligonucleotides
    • Dubertret, B.; Calame, M.; Libchaber, A. J. Single-mismatch detection using gold-quenched fluorescent oligonucleotides. Nat. Biotechnol. 2001, 19, 365-370.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 365-370
    • Dubertret, B.1    Calame, M.2    Libchaber, A.J.3
  • 12
    • 0029670262 scopus 로고    scopus 로고
    • Molecular beacons: Probes that fluoresce upon hybridization
    • Tyagi, S.; Kramer, F. R. Molecular beacons: Probes that fluoresce upon hybridization. Nat. Biotechnol. 1996, 14, 303-308.
    • (1996) Nat. Biotechnol. , vol.14 , pp. 303-308
    • Tyagi, S.1    Kramer, F.R.2
  • 13
    • 0043234727 scopus 로고    scopus 로고
    • Photoinduced electron transfer between fluorescent dyes and guanosine residues in DNA-hairpins
    • Heinlein, T.; Knemeyer, J.-P.; Piestert, O.; Sauer, M. Photoinduced electron transfer between fluorescent dyes and guanosine residues in DNA-hairpins. J. Phys. Chem. B 2003, 107, 7957-7964.
    • (2003) J. Phys. Chem. B , vol.107 , pp. 7957-7964
    • Heinlein, T.1    Knemeyer, J.-P.2    Piestert, O.3    Sauer, M.4
  • 14
    • 0030476302 scopus 로고    scopus 로고
    • Thermodynamic comparison of the salt dependence of natural RNA hairpins and RNA hairpins with non-nucleotide spacers
    • Williams, D. J.; Hall, K. B. Thermodynamic comparison of the salt dependence of natural RNA hairpins and RNA hairpins with non-nucleotide spacers. Biochemistry 1996, 35, 14665-14670.
    • (1996) Biochemistry , vol.35 , pp. 14665-14670
    • Williams, D.J.1    Hall, K.B.2
  • 15
    • 0035865925 scopus 로고    scopus 로고
    • Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: Comparison of hairpin versus linear capture probes
    • Riccelli, P.; Merante, F.; Leung, K.; Bortolin, S.; Zastawny, R.; Janeczko, R.; Benight, A. S. Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: Comparison of hairpin versus linear capture probes. Nucleic Acids Res. 2001, 29, 996-1004.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 996-1004
    • Riccelli, P.1    Merante, F.2    Leung, K.3    Bortolin, S.4    Zastawny, R.5    Janeczko, R.6    Benight, A.S.7
  • 16
    • 0033988142 scopus 로고    scopus 로고
    • Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays
    • Steemers, F. J.; Ferguson, J. A.; Walt, D. R. Screening unlabeled DNA targets with randomly ordered fiber-optic gene arrays. Nat. Biotechnol. 2000, 18, 91-94.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 91-94
    • Steemers, F.J.1    Ferguson, J.A.2    Walt, D.R.3
  • 17
    • 0032754283 scopus 로고    scopus 로고
    • A fiber-optic evanescent wave DNA biosensor based on novel molecular beacons
    • Liu, X.; Tan, W. A fiber-optic evanescent wave DNA biosensor based on novel molecular beacons. Anal. Chem. 1999, 71, 5054-5059.
    • (1999) Anal. Chem. , vol.71 , pp. 5054-5059
    • Liu, X.1    Tan, W.2
  • 19
    • 0033620449 scopus 로고    scopus 로고
    • Designing a novel molecular beacon for surface-immobilized DNA hybridization studies
    • Fang, X.; Liu, X.; Schuster, S.; Tan, W. Designing a novel molecular beacon for surface-immobilized DNA hybridization studies. J. Am. Chem. Soc. 1999, 121, 2921-2922.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 2921-2922
    • Fang, X.1    Liu, X.2    Schuster, S.3    Tan, W.4
  • 20
    • 0041599812 scopus 로고    scopus 로고
    • Hybridization-based unquenching of DNA hairpins on Au surfaces: Prototypical "molecular beacon" biosensors
    • Du, H.; Disney, M. D.; Miller, B. L.; Krauss, T. D. Hybridization-based unquenching of DNA hairpins on Au surfaces: prototypical "molecular beacon" biosensors. J. Am. Chem. Soc. 2003, 125, 4012-4013.
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 4012-4013
    • Du, H.1    Disney, M.D.2    Miller, B.L.3    Krauss, T.D.4
  • 22
    • 19744364009 scopus 로고    scopus 로고
    • Sensitivity and specificity of metal surface-immobilized "molecular beacon" biosensors
    • Du, H.; Strohsahl, C. M.; Camera, J.; Miller, B. L.; Krauss, T. D. Sensitivity and specificity of metal surface-immobilized "molecular beacon" biosensors. J. Am. Chem. Soc. 2005, 127, 7932-7940.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 7932-7940
    • Du, H.1    Strohsahl, C.M.2    Camera, J.3    Miller, B.L.4    Krauss, T.D.5
  • 23
    • 0042424859 scopus 로고    scopus 로고
    • Electrochemical interrogation of conformational changes as a reagentless method for the sequence-specific detection of DNA
    • Fan, C.; Plaxco, K. W.; Heeger, A. J. Electrochemical interrogation of conformational changes as a reagentless method for the sequence-specific detection of DNA. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9134-9137.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 9134-9137
    • Fan, C.1    Plaxco, K.W.2    Heeger, A.J.3
  • 24
    • 70350334146 scopus 로고    scopus 로고
    • An electrochemical sensor for single nucleotide polymorphism detection in serum based on a triple-stem DNA probe
    • Xiao, Y.; Lou, X.; Uzawa, T.; Plakos, K. J.; Plaxco, K. W.; Soh, H. T. An electrochemical sensor for single nucleotide polymorphism detection in serum based on a triple-stem DNA probe. J. Am. Chem. Soc. 2009, 131, 15311-15316.
    • (2009) J. Am. Chem. Soc. , vol.131 , pp. 15311-15316
    • Xiao, Y.1    Lou, X.2    Uzawa, T.3    Plakos, K.J.4    Plaxco, K.W.5    Soh, H.T.6
  • 25
    • 84866522007 scopus 로고    scopus 로고
    • Bioelectrochemical switches for the quantitative detection of antibodies directly in whole blood
    • Vallee-Belisle, A.; Ricci, F.; Uzawa, T.; Xia, F.; Plaxco, K. W. Bioelectrochemical switches for the quantitative detection of antibodies directly in whole blood. J. Am. Chem. Soc. 2012, 134, 15197-15200.
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 15197-15200
    • Vallee-Belisle, A.1    Ricci, F.2    Uzawa, T.3    Xia, F.4    Plaxco, K.W.5
  • 26
    • 1642482288 scopus 로고    scopus 로고
    • Surface-attached molecular beacons light the way for DNA sequencing
    • Paleček, E. Surface-attached molecular beacons light the way for DNA sequencing. Trends Biotechnol. 2004, 22, 53-58.
    • (2004) Trends Biotechnol. , vol.22 , pp. 53-58
    • Paleček, E.1
  • 27
    • 33747615511 scopus 로고    scopus 로고
    • Sequence-specific, electronic detection of oligonucleotides in blood, soil, and foodstuffs with the reagentless, reusable E-DNA sensor
    • Lubin, A. A.; Lai, R. Y.; Baker, B. R.; Heeger, A. J.; Plaxco, K. W. Sequence-specific, electronic detection of oligonucleotides in blood, soil, and foodstuffs with the reagentless, reusable E-DNA sensor. Anal. Chem. 2006, 78, 5671-5677.
    • (2006) Anal. Chem. , vol.78 , pp. 5671-5677
    • Lubin, A.A.1    Lai, R.Y.2    Baker, B.R.3    Heeger, A.J.4    Plaxco, K.W.5
  • 28
    • 34848919521 scopus 로고    scopus 로고
    • Label-free electrochemical detection of DNA in blood serum via target-induced resolution of an electrode-bound DNA pseudoknot
    • Xiao, Y.; Qu, X.; Plaxco, K. W.; Heeger, A. J. Label-free electrochemical detection of DNA in blood serum via target-induced resolution of an electrode-bound DNA pseudoknot. J. Am. Chem. Soc. 2007, 129, 11896-11897.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 11896-11897
    • Xiao, Y.1    Qu, X.2    Plaxco, K.W.3    Heeger, A.J.4
  • 29
    • 84891803144 scopus 로고    scopus 로고
    • A reusable sensor for the label-free detection of specific oligonucleotides by surface plasmon fluorescence spectroscopy
    • Nöll, G.; Su, Q.; Heidel, B.; Yu, Y. A reusable sensor for the label-free detection of specific oligonucleotides by surface plasmon fluorescence spectroscopy. Adv. Healthcare Mater. 2014, 3, 42-6.
    • (2014) Adv. Healthcare Mater. , vol.3 , pp. 42-46
    • Nöll, G.1    Su, Q.2    Heidel, B.3    Yu, Y.4
  • 30
    • 0017858702 scopus 로고
    • Ellipsometry as a tool to study the adsorption behavior of synthetic and biopolymers at the air-water interface
    • De Feijter, J.; Benjamins, d. J.; Veer, F. Ellipsometry as a tool to study the adsorption behavior of synthetic and biopolymers at the air-water interface. Biopolymers 1978, 17, 1759-1772.
    • (1978) Biopolymers , vol.17 , pp. 1759-1772
    • De Feijter, J.1    Benjamins, D.J.2    Veer, F.3
  • 31
    • 4644274073 scopus 로고    scopus 로고
    • Determination of the refractive index increment (dn/dc) of molecule and macromolecule solutions by surface plasmon resonance
    • Tumolo, T.; Angnes, L.; Baptista, M. S. Determination of the refractive index increment (dn/dc) of molecule and macromolecule solutions by surface plasmon resonance. Anal. Biochem. 2004, 333, 273-279.
    • (2004) Anal. Biochem. , vol.333 , pp. 273-279
    • Tumolo, T.1    Angnes, L.2    Baptista, M.S.3
  • 32
    • 57049085180 scopus 로고    scopus 로고
    • Manipulating the salt and thermal stability of DNA multilayer films via oligonucleotide length
    • Lee, L.; Johnston, A. P.; Caruso, F. Manipulating the salt and thermal stability of DNA multilayer films via oligonucleotide length. Biomacromolecules 2008, 9, 3070-3078.
    • (2008) Biomacromolecules , vol.9 , pp. 3070-3078
    • Lee, L.1    Johnston, A.P.2    Caruso, F.3
  • 35
    • 31544456398 scopus 로고    scopus 로고
    • Dynamics of electron transport by elastic bending of short DNA duplexes. Experimental study and quantitative modeling of the cyclic voltammetric behavior of 3′-ferrocenyl DNA end-grafted on gold
    • Anne, A.; Demaille, C. Dynamics of electron transport by elastic bending of short DNA duplexes. Experimental study and quantitative modeling of the cyclic voltammetric behavior of 3′-ferrocenyl DNA end-grafted on gold. J. Am. Chem. Soc. 2006, 128, 542-557.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 542-557
    • Anne, A.1    Demaille, C.2
  • 36
    • 48249134715 scopus 로고    scopus 로고
    • Electron transport by molecular motion of redox-dna strands: Unexpectedly slow rotational dynamics of 20-mer ds-DNA chains end-grafted onto surfaces via c6 linkers
    • Anne, A.; Demaille, C. Electron transport by molecular motion of redox-dna strands: unexpectedly slow rotational dynamics of 20-mer ds-DNA chains end-grafted onto surfaces via c6 linkers. J. Am. Chem. Soc. 2008, 130, 9812-9823.
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 9812-9823
    • Anne, A.1    Demaille, C.2
  • 39
    • 0346725084 scopus 로고    scopus 로고
    • Target discrimination by surface-immobilized molecular beacons designed to detect Francisella tularensis
    • Ramachandran, A.; Flinchbaugh, J.; Ayoubi, P.; Olah, G. A.; Malayer, J. R. Target discrimination by surface-immobilized molecular beacons designed to detect Francisella tularensis. Biosens. Bioelectron. 2004, 19, 727-736.
    • (2004) Biosens. Bioelectron. , vol.19 , pp. 727-736
    • Ramachandran, A.1    Flinchbaugh, J.2    Ayoubi, P.3    Olah, G.A.4    Malayer, J.R.5
  • 40
    • 80052316722 scopus 로고    scopus 로고
    • Isothermal discrimination of single-nucleotide polymorphisms via real-time kinetic desorption and label-free detection of DNA using silicon photonic microring resonator arrays
    • Qavi, A. J.; Mysz, T. M.; Bailey, R. C. Isothermal discrimination of single-nucleotide polymorphisms via real-time kinetic desorption and label-free detection of DNA using silicon photonic microring resonator arrays. Anal. Chem. 2011, 83, 6827-6833.
    • (2011) Anal. Chem. , vol.83 , pp. 6827-6833
    • Qavi, A.J.1    Mysz, T.M.2    Bailey, R.C.3


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