Comparison of metabolic network between muscle and intramuscular adipose tissues in Hanwoo beef cattle using a systems biology approach

International Journal of Genomics

Volumn 2014, Issue , 2014, Pages

  Lee, Hyun Jeong ^a   Park, Hye Sun ^b   Kim, Woonsu ^b   Yoon, Duhak ^c   Seo, Seongwon ^b  

^a National Institute of Animal Science   (South Korea)

^b Chungnam National University   (South Korea)

^c Kyungpook National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMOKINE; COLLAGEN; FIBRONECTIN; INTEGRIN; LAMININ; MESSENGER RNA; TRANSCRIPTOME;

ADIPOSE TISSUE; AEROBIC METABOLISM; ANIMAL TISSUE; ARTICLE; BEEF CATTLE; CARCASS; CELL ADHESION; CELL STRUCTURE; DOWN REGULATION; GENE EXPRESSION; GENOME; INTRAMUSCULAR ADIPOSE TISSUE; LONGISSIMUS DORSI; METABOLIC PARAMETERS; METABOLIC REGULATION; MUSCLE; MUSCLE TISSUE; NONHUMAN; QUALITY CONTROL; RNA SEQUENCE; SIGNAL TRANSDUCTION; SUBCUTANEOUS FAT; SYSTEMS BIOLOGY; UPREGULATION;

BOS;

EID: 84912144939     PISSN: 2314436X     EISSN: 23144378     Source Type: Journal    
DOI: 10.1155/2014/679437     Document Type: Article

References (25)

1. Jung K. K., Choi C. B., Development of technologies to improve competitiveness of Hanwoo. S. Report to the Ministry of Agriculture 2003 Ministry of Ariculture, Food and Rural Affairs Seoul, Korea 85 98
2. Joe A. W. B., Lin Y., Even Y., Vogl A. W., Rossi F. M. V., Depot-specific differences in adipogenic progenitor abundance and proliferative response to high-fat diet. Stem Cells 2009 27 10 2563 2570 10.1002/stem.190 2-s2.0-70350228797
3. Smith S. B., Kawachi H., Choi C. B., Choi C. W., Wu G., Sawyer J. E., Cellular regulation of bovine intramuscular adipose tissue development and composition. Journal of Animal Science 2009 87 14 E72 82 10.2527/jas.2008-1340 2-s2.0-65549108875
4. Trayhurn P., Drevon C. A., Eckel J., Secreted proteins from adipose tissue and skeletal muscle-adipokines, myokines and adipose/muscle cross-talk. Archives of Physiology and Biochemistry 2011 117 2 47 56 2-s2.0-79953684026 10.3109/13813455.2010.535835
5. Galic S., Oakhill J. S., Steinberg G. R., Adipose tissue as an endocrine organ. Molecular and Cellular Endocrinology 2010 316 2 129 139 2-s2.0-72449191699 10.1016/j.mce.2009.08.018
6. Havekes B., Sauerwein H. P., Adipocyte-myocyte crosstalk in skeletal muscle insulin resistance; is there a role for thyroid hormone? Current Opinion in Clinical Nutrition & Metabolic Care 2010 13 6 641 646 10.1097/MCO.0b013e32833e341d 2-s2.0-78149284666
7. Kovalik J.-P., Slentz D., Stevens R. D., Kraus W. E., Houmard J. A., Nicoll J. B., Lea-Currie Y. R., Everingham K., Kien C. L., Buehrer B. M., Muoio D. M., Metabolic remodeling of human skeletal myocytes by cocultured adipocytes depends on the lipolytic state of the system. Diabetes 2011 60 7 1882 1893 10.2337/db10-0427 2-s2.0-80052096458
8. Sell H., Dietze-Schroeder D., Eckel J., The adipocyte-myocyte axis in insulin resistance. Trends in Endocrinology and Metabolism 2006 17 10 416 422 10.1016/j.tem.2006.10.010 2-s2.0-33751161267
9. Mortazavi A., Williams B. A., McCue K., Schaeffer L., Wold B., Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 2008 5 7 621 628 10.1038/nmeth.1226 2-s2.0-46249106990
10. Baldwin R. L., Li R. W., Li C.-J., Thomson J. M., Bequette B. J., Characterization of the longissimus lumborum transcriptome response to adding propionate to the diet of growing angus beef steers. Physiological Genomics 2012 44 10 543 550 10.1152/physiolgenomics.00144.2011 2-s2.0-84862112662
11. He H., Liu X., Characterization of transcriptional complexity during longissimus muscle development in bovines using high-throughput sequencing. PLoS ONE 2013 8 6 e64356 10.1371/journal.pone.0064356 2-s2.0-84878755885
12. Sheng X., Ni H., Liu Y., Li J., Zhang L., Guo Y., RNA-seq analysis of bovine intramuscular, subcutaneous and perirenal adipose tissues. Molecular Biology Reports 2014 41 3 1631 1637 10.1007/s11033-013-3010-8
13. Lee H.-J., Jang M., Kim H., Kwak W., Park W., Hwang J. Y., Lee C.-K., Jang G. W., Park M. N., Kim H.-C., Jeong J. Y., Seo K. S., Cho S., Lee B.-Y., Comparative transcriptome analysis of adipose tissues reveals that ECM-receptor interaction is involved in the depot-specific adipogenesis in cattle. PLoS ONE 2013 8 6 e66267 10.1371/journal.pone.0066267 2-s2.0-84879276110
14. Flicek P., Ahmed I., Amode M. R., Barrell D., Beal K., Brent S., Carvalho-Silva D., Clapham P., Coates G., Fairley S., Fitzgerald S., Gil L., García-Girón C., Gordon L., Hourlier T., Hunt S., Juettemann T., Kähäri A. K., Keenan S., Komorowska M., Kulesha E., Longden I., Maurel T., McLaren W. M., Muffato M., Nag R., Overduin B., Pignatelli M., Pritchard B., Pritchard E., Riat H. S., Ritchie G. R. S., Ruffier M., Schuster M., Sheppard D., Sobral D., Taylor K., Thormann A., Trevanion S., White S., Wilder S. P., Aken B. L., Birney E., Cunningham F., Dunham I., Harrow J., Herrero J., Hubbard T. J. P., Johnson N., Kinsella R., Parker A., Spudich G., Yates A., Zadissa A., Searle S. M. J., Ensembl 2013. Nucleic Acids Research 2013 41 1 D48 D55 10.1093/nar/gks1236 2-s2.0-84875391572
15. Anders S., McCarthy D. J., Chen Y., Okoniewski M., Smyth G. K., Huber W., Robinson M. D., Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nature Protocols 2013 8 9 1765 1786 10.1038/nprot.2013.099 2-s2.0-84883364264
16. Dennis G. Jr., Sherman B. T., Hosack D. A., Yang J., Gao W., Lane H. C., Lempicki R. A., DAVID: database for annotation, visualization, and integrated discovery. Genome Biology 2003 4 5, article P3 10.1186/gb-2003-4-5-p3 2-s2.0-0038005018
17. Albrecht E., Teuscher F., Ender K., Wegner J., Growth- and breed-related changes of marbling characteristics in cattle. Journal of Animal Science 2006 84 5 1067 1075 2-s2.0-33748802809
18. Brethour J. R., Using serial ultrasound measures to generate models of marbling and backfat thickness changes in feedlot cattle. Journal of Animal Science 2000 78 8 2055 2061 2-s2.0-0034242618
19. Ferraz A. L. J., Ojeda A., López-Béjar M., Fernandes L. T., Castelló A., Folch J. M., Pérez-Enciso M., Transcriptome architecture across tissues in the pig. BMC Genomics 2008 9, article 173 10.1186/1471-2164-9-173 2-s2.0-42549083248
20. Zhang W., Morris Q. D., Chang R., Shai O., Bakowski M. A., Mitsakakis N., Mohammad N., Robinson M. D., Zirngibl R., Somogyi E., Laurin N., Eftekharpour E., Sat E., Grigull J., Pan Q., Peng W.-T., Krogan N., Greenblatt J., Fehlings M., Van Der Kooy D., Aubin J., Bruneau B. G., Rossant J., Blencowe B. J., Frey B. J., Hughes T. R., The functional landscape of mouse gene expression. Journal of Biology 2004 3 5, article 21 10.1186/jbiol16 2-s2.0-33947219859
21. Shyamsundar R., Kim Y. H., Higgins J. P., Montgomery K., Jorden M., Sethuraman A., van de Rijn M., Botstein D., Brown P. O., Pollack J. R., A DNA microarray survey of gene expression in normal human tissues. Genome Biology 2005 6 3, article R22 10.1186/gb-2005-6-3-r22 2-s2.0-26844498200
22. Buchalter S. E., Crain M. R., Kreisberg R., Regulation of lactate metabolism in vivo. Diabetes/Metabolism Reviews 1989 5 4 379 391 10.1002/dmr.5610050405 2-s2.0-0024405625
23. Mondon C. E., Jones I. R., Azhar S., Hollenbeck C. B., Reaven G. M., Lactate production and pyruvate dehydrogenase activity in fat and skeletal muscle from diabetic rats. Diabetes 1992 41 12 1547 1554 2-s2.0-0026499695 10.2337/diab.41.12.1547
24. Cui H.-X., Liu R.-R., Zhao G.-P., Zheng M.-Q., Chen J.-L., Wen J., Identification of differentially expressed genes and pathways for intramuscular fat deposition in pectoralis major tissues of fast-and slow-growing chickens. BMC Genomics 2012 13 1, article 213 10.1186/1471-2164-13-213 2-s2.0-84861540702
25. Teti A., Regulation of cellular functions by extracellular matrix. Journal of the American Society of Nephrology 1992 2 10 S83 S87 2-s2.0-0026847984