메뉴 건너뛰기




Volumn 28, Issue , 2014, Pages 524-529

Full genomic characterization of a novel genotype combination, G4P[14], of a human rotavirus strain from Barbados

Author keywords

Human; Porcine; P 14 ; Reassortment; Rotavirus

Indexed keywords

ARTICLE; BARBADOS; GENE SEQUENCE; GENETIC REASSORTMENT; GENOME ANALYSIS; GENOTYPE; HUMAN ROTAVIRUS; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS STRAIN; VIRUS TRANSMISSION; CLASSIFICATION; GENETICS; HUMAN; MOLECULAR GENETICS; ROTAVIRUS; ROTAVIRUS INFECTIONS; VIROLOGY;

EID: 84912141627     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.09.020     Document Type: Article
Times cited : (17)

References (51)
  • 1
    • 84859963822 scopus 로고    scopus 로고
    • Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs
    • Banyai K., Laszlo B., Duque J., Steele A.D., Nelson E.A., Gentsch J.R., Parashar U.D. Systematic review of regional and temporal trends in global rotavirus strain diversity in the pre rotavirus vaccine era: insights for understanding the impact of rotavirus vaccination programs. Vaccine 2012, 30(Suppl 1):A122-130.
    • (2012) Vaccine , vol.30 , pp. A122-130
    • Banyai, K.1    Laszlo, B.2    Duque, J.3    Steele, A.D.4    Nelson, E.A.5    Gentsch, J.R.6    Parashar, U.D.7
  • 2
    • 69749125952 scopus 로고    scopus 로고
    • Genetic heterogeneity in human G6P[14] rotavirus strains detected in Hungary suggests independent zoonotic origin
    • Banyai K., Martella V., Molnar P., Mihaly I., Van Ranst M., Matthijnssens J. Genetic heterogeneity in human G6P[14] rotavirus strains detected in Hungary suggests independent zoonotic origin. J. Infect. 2009, 59:213-215.
    • (2009) J. Infect. , vol.59 , pp. 213-215
    • Banyai, K.1    Martella, V.2    Molnar, P.3    Mihaly, I.4    Van Ranst, M.5    Matthijnssens, J.6
  • 4
    • 84861928360 scopus 로고    scopus 로고
    • Vaccine-derived NSP2 segment in rotaviruses from vaccinated children with gastroenteritis in Nicaragua
    • Bucardo F., Rippinger C.M., Svensson L., Patton J.T. Vaccine-derived NSP2 segment in rotaviruses from vaccinated children with gastroenteritis in Nicaragua. Infect. Genet. Evol. 2012, 12:1282-1294.
    • (2012) Infect. Genet. Evol. , vol.12 , pp. 1282-1294
    • Bucardo, F.1    Rippinger, C.M.2    Svensson, L.3    Patton, J.T.4
  • 5
    • 79951575211 scopus 로고    scopus 로고
    • Molecular characterization of unusual bovine group A rotavirus G8P[14] strains identified in western India: emergence of P[14] genotype
    • Chitambar S.D., Arora R., Kolpe A.B., Yadav M.M., Raut C.G. Molecular characterization of unusual bovine group A rotavirus G8P[14] strains identified in western India: emergence of P[14] genotype. Vet. Microbiol. 2011, 148:384-388.
    • (2011) Vet. Microbiol. , vol.148 , pp. 384-388
    • Chitambar, S.D.1    Arora, R.2    Kolpe, A.B.3    Yadav, M.M.4    Raut, C.G.5
  • 12
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 16
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses
    • Kluwer/Lippincott, Williams and Wilkins, Philadelphia, PA, D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.)
    • Estes M., Kapikian A. Rotaviruses. Fields Virology 2007, 1917-1974. Kluwer/Lippincott, Williams and Wilkins, Philadelphia, PA. fifth ed. D.M. Knipe, P.M. Howley, D.E. Griffin, R.A. Lamb, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
    • (2007) Fields Virology , pp. 1917-1974
    • Estes, M.1    Kapikian, A.2
  • 18
    • 34548106355 scopus 로고    scopus 로고
    • Evidence for bovine origin of VP4 and VP7 genes of human group A rotavirus G6P[14] and G10P[14] strains
    • Ghosh S., Varghese V., Samajdar S., Sinha M., Naik T.N., Kobayashi N. Evidence for bovine origin of VP4 and VP7 genes of human group A rotavirus G6P[14] and G10P[14] strains. J. Clin. Microbiol. 2007, 45:2751-2753.
    • (2007) J. Clin. Microbiol. , vol.45 , pp. 2751-2753
    • Ghosh, S.1    Varghese, V.2    Samajdar, S.3    Sinha, M.4    Naik, T.N.5    Kobayashi, N.6
  • 20
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6
  • 22
    • 12344259366 scopus 로고    scopus 로고
    • A porcine G9 rotavirus strain shares neutralization and VP7 phylogenetic sequence lineage 3 characteristics with contemporary human G9 rotavirus strains
    • Hoshino Y., Honma S., Jones R.W., Ross J., Santos N., Gentsch J.R., Kapikian A.Z., Hesse R.A. A porcine G9 rotavirus strain shares neutralization and VP7 phylogenetic sequence lineage 3 characteristics with contemporary human G9 rotavirus strains. Virology 2005, 332:177-188.
    • (2005) Virology , vol.332 , pp. 177-188
    • Hoshino, Y.1    Honma, S.2    Jones, R.W.3    Ross, J.4    Santos, N.5    Gentsch, J.R.6    Kapikian, A.Z.7    Hesse, R.A.8
  • 24
    • 0035088070 scopus 로고    scopus 로고
    • Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999
    • Iturriza-Gomara M., Isherwood B., Desselberger U., Gray J. Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J. Virol. 2001, 75:3696-3705.
    • (2001) J. Virol. , vol.75 , pp. 3696-3705
    • Iturriza-Gomara, M.1    Isherwood, B.2    Desselberger, U.3    Gray, J.4
  • 25
    • 0036147047 scopus 로고    scopus 로고
    • Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis
    • Jenkins G.M., Rambaut A., Pybus O.G., Holmes E.C. Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis. J. Mol. Evol. 2002, 54:156-165.
    • (2002) J. Mol. Evol. , vol.54 , pp. 156-165
    • Jenkins, G.M.1    Rambaut, A.2    Pybus, O.G.3    Holmes, E.C.4
  • 32
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens J., Heylen E., Zeller M., Rahman M., Lemey P., Van Ranst M. Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol. Biol. Evol. 2010, 27:2431-2436.
    • (2010) Mol. Biol. Evol. , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    Van Ranst, M.6
  • 34
  • 35
    • 80053484777 scopus 로고    scopus 로고
    • Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC
    • McDonald S.M., Davis K., McAllen J.K., Spiro D.J., Patton J.T. Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC. Infect. Genet. Evol. 2011, 11:1586-1594.
    • (2011) Infect. Genet. Evol. , vol.11 , pp. 1586-1594
    • McDonald, S.M.1    Davis, K.2    McAllen, J.K.3    Spiro, D.J.4    Patton, J.T.5
  • 36
    • 49849095453 scopus 로고    scopus 로고
    • Molecular characterization of VP4, VP6 and VP7 genes of a rare G8P[14] rotavirus strain detected in an infant with gastroenteritis in Italy
    • Medici M.C., Abelli L.A., Martinelli M., Dettori G., Chezzi C. Molecular characterization of VP4, VP6 and VP7 genes of a rare G8P[14] rotavirus strain detected in an infant with gastroenteritis in Italy. Virus Res. 2008, 137:163-167.
    • (2008) Virus Res. , vol.137 , pp. 163-167
    • Medici, M.C.1    Abelli, L.A.2    Martinelli, M.3    Dettori, G.4    Chezzi, C.5
  • 37
    • 79951952059 scopus 로고    scopus 로고
    • Genome sequence based molecular epidemiology of unusual US Rotavirus A G9 strains isolated from Omaha, USA between 1997 and 2000
    • Mijatovic-Rustempasic S., Banyai K., Esona M.D., Foytich K., Bowen M.D., Gentsch J.R. Genome sequence based molecular epidemiology of unusual US Rotavirus A G9 strains isolated from Omaha, USA between 1997 and 2000. Infect. Genet. Evol. 2011, 11:522-527.
    • (2011) Infect. Genet. Evol. , vol.11 , pp. 522-527
    • Mijatovic-Rustempasic, S.1    Banyai, K.2    Esona, M.D.3    Foytich, K.4    Bowen, M.D.5    Gentsch, J.R.6
  • 39
    • 79960890403 scopus 로고    scopus 로고
    • Full genomic analyses of human rotavirus G4P[4], G4P[6], G9P[19] and G10P[6] strains from North-eastern India: evidence for interspecies transmission and complex reassortment events
    • Mukherjee A., Ghosh S., Bagchi P., Dutta D., Chattopadhyay S., Kobayashi N., Chawla-Sarkar M. Full genomic analyses of human rotavirus G4P[4], G4P[6], G9P[19] and G10P[6] strains from North-eastern India: evidence for interspecies transmission and complex reassortment events. Clin. Microbiol Infect. 2011, 17:1343-1346.
    • (2011) Clin. Microbiol Infect. , vol.17 , pp. 1343-1346
    • Mukherjee, A.1    Ghosh, S.2    Bagchi, P.3    Dutta, D.4    Chattopadhyay, S.5    Kobayashi, N.6    Chawla-Sarkar, M.7
  • 41
    • 0030745708 scopus 로고    scopus 로고
    • Sequence of the VP7 gene of an atypical human rotavirus: evidence for genetic and antigenic drift
    • Palombo E.A., Bugg H.C., Masendycz P.J., Bishop R.F. Sequence of the VP7 gene of an atypical human rotavirus: evidence for genetic and antigenic drift. DNA Seq. 1997, 7:307-311.
    • (1997) DNA Seq. , vol.7 , pp. 307-311
    • Palombo, E.A.1    Bugg, H.C.2    Masendycz, P.J.3    Bishop, R.F.4
  • 46
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 48
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos N., Hoshino Y. Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev. Med. Virol. 2005, 15:29-56.
    • (2005) Rev. Med. Virol. , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 49
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 50
    • 84856217709 scopus 로고    scopus 로고
    • 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis
    • Network, W.H.-c.G.R.S.
    • Tate J.E., Burton A.H., Boschi-Pinto C., Steele A.D., Duque J., Parashar U.D. 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet. Infect. Dis 2012, 12:136-141. Network, W.H.-c.G.R.S.
    • (2012) Lancet. Infect. Dis , vol.12 , pp. 136-141
    • Tate, J.E.1    Burton, A.H.2    Boschi-Pinto, C.3    Steele, A.D.4    Duque, J.5    Parashar, U.D.6
  • 51
    • 53249109344 scopus 로고    scopus 로고
    • Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans
    • Tsugawa T., Hoshino Y. Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/feline rotaviruses to humans. Virology 2008, 380:344-353.
    • (2008) Virology , vol.380 , pp. 344-353
    • Tsugawa, T.1    Hoshino, Y.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.